View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_high_5 (Length: 632)
Name: NF11599_high_5
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_5 |
 | |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 13 - 617
Target Start/End: Original strand, 24318202 - 24318807
Alignment:
| Q |
13 |
cagacaaaagacaagcaaagagacaagaatctccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24318202 |
cagacaaaagacaagcaaagagacaagaatgtccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaat |
24318301 |
T |
|
| Q |
113 |
ggccgaacaaa-cccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgccgacctatctgaagaagaactcatatcactaaccagcgagtgt |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24318302 |
ggccgaacaaagcccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgtcgacctatctgaagaagaactcatatcactaaccagcgagtgt |
24318401 |
T |
|
| Q |
212 |
catcatatgtatgaggtatcggctgaagtcaggtttgatggtgaaggatgctttactttacccatcgagataaatggggatgatatcgaacaaggattgt |
311 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24318402 |
catcatacgtatgaggtattggctgaagtcaggtttgatggtgaaggatgctttactctacccatcgagataaatggggatgatatcgaacaaggattgt |
24318501 |
T |
|
| Q |
312 |
atgattcaggagcgaatgctaacctaatgagcttgaccaaggcaagggaattagggattaagaagatatcctcatatccttatacgatagggtatgctaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24318502 |
atgattcaggagcgaatgctaacctaatgagcttgaccaaggcaagggaattagggattaagaagatatcctcatatccttatacgatagggtatgctaa |
24318601 |
T |
|
| Q |
412 |
tggccacgaagaagaggcacttagtgtacttaagaattttccacttaacatcagggacatcgattactatttagacatagtgattgcagacactagagtc |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
24318602 |
tggccacgaagaagaggcacttagtgtacttaagaattttccacttaacatcagggacttcgattactatttagacatagtgattgcagacaccagagtc |
24318701 |
T |
|
| Q |
512 |
atatatgaattctctttaatccttggcatgaaattctttgcttaaggaggcctgctgcttgatggtgaacaaagggaaactaccataagaacgtcaaagt |
611 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
24318702 |
atatatgaattctctctaatccttggcatgaaattctttgcttaaggaggcctgctgcttgatggcgaacagagggaaactaccataagaacgtcaaagt |
24318801 |
T |
|
| Q |
612 |
tatatg |
617 |
Q |
| |
|
|||||| |
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|
| T |
24318802 |
tatatg |
24318807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 24188124 - 24188239
Alignment:
| Q |
45 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaa-cccatgctgcatcatgtttc |
143 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||| |
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|
| T |
24188124 |
ccgccagagttaaatgctttgcataaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttc |
24188223 |
T |
|
| Q |
144 |
ttcaagaactcttgaa |
159 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
24188224 |
ttcaagaactcttgaa |
24188239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 17430597 - 17430467
Alignment:
| Q |
73 |
ttctcaagca-gtacaaggtaatcaagcctattaaggaaatggccgaacaaac-ccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgccg |
170 |
Q |
| |
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|||||||||| ||||| ||||||| ||| || |||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||| | |||||| |
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|
| T |
17430597 |
ttctcaagcatgtacagagtaatcatgccgatcaaggaaatggccgatcaaagtccatgctgcatcaagtttcttcaagaactattgaagattaatgccg |
17430498 |
T |
|
| Q |
171 |
acctatctgaagaagaactcatatcactaac |
201 |
Q |
| |
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| ||||| || |||||||||||||||||||| |
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| T |
17430497 |
atctatccgaggaagaactcatatcactaac |
17430467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 8e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 134 - 542
Target Start/End: Complemental strand, 16228336 - 16227928
Alignment:
| Q |
134 |
atcatgtttcttcaagaactcttgaaaaaacatgccgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatatgtatgaggtatcgg |
233 |
Q |
| |
|
|||| |||||||||||||| ||||| | |||| || ||||||||||||||||||||||||||||| || || |||||| | ||||| | | || ||| |
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| T |
16228336 |
atcaagtttcttcaagaacaattgaagaccaatgctgatctatctgaagaagaactcatatcactaactagagaatgtcataacatgtacgggttaccgg |
16228237 |
T |
|
| Q |
234 |
ctgaagtcaggtttgatggtgaaggatgctttactttacccatcgagataaatggggatgatatcgaacaaggattgtatgattcaggagcgaatgctaa |
333 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||||| |||||||| ||||| || || |||||| |||||||||| ||||| |||||||||||| || |
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| T |
16228236 |
ctgaagtcagattcgatggtgaaagatgctttactctacccatccgcataaagggagaatatatcgggcaaggattgtgtgattaaggagcgaatgccaa |
16228137 |
T |
|
| Q |
334 |
cctaatgagcttgaccaaggcaagggaattagggattaagaagatatcctcatatccttatacgatagggtatgctaatggccacgaagaagaggcactt |
433 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || || |
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|
| T |
16228136 |
ccgaatgagcttgaccaaggcaagggagttaggaaatttgaagatatctccatatccttatacgatagggtatgctaatggccacgaggaagagacaatt |
16228037 |
T |
|
| Q |
434 |
agtgtacttaagaattttccacttaacatcagggacatcgattactatttagacatagtgattgcagacactagagtcatatatgaattctctttaatcc |
533 |
Q |
| |
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|| | || | |||||| || ||||||| |||| | ||||||||| ||||||||| |||| ||||| ||| ||| | |||||| ||| | ||||||| |
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| T |
16228036 |
agcatcctaataaattttacaattaacataaggggcctcgattactgtttagacatcgtgaatgcaggcaccagatggagatatgatttcccgttaatcc |
16227937 |
T |
|
| Q |
534 |
ttggcatga |
542 |
Q |
| |
|
| ||||||| |
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|
| T |
16227936 |
taggcatga |
16227928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 3398972 - 3399115
Alignment:
| Q |
125 |
ccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgccgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatatgtatg |
224 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| || | | |||| | |||||||| |||||| |||| ||||| | ||||| | |||||| | ||| | |
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|
| T |
3398972 |
ccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctagcgaatttcatcacacgtacg |
3399071 |
T |
|
| Q |
225 |
aggtatcggctgaagtcaggtttgatggtgaaggatgctttact |
268 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
3399072 |
aggtaccggctgtagtcaggtttgatggtgaaggttgctttact |
3399115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 224 - 509
Target Start/End: Complemental strand, 233142 - 232857
Alignment:
| Q |
224 |
gaggtatcggctgaagtcaggtttgatggtgaaggatgctttactttacccatcgagataaatggggatgatatcgaacaaggattgtatgattcaggag |
323 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| |||||||||||||||||||| || | ||||| || |||||| |||||||| | |||||| |||| |
|
|
| T |
233142 |
gaggtaccggccaaagtcaggttttatggtgaatgatgctttactttacccatcaaggttaatggagaatatatcgggcaaggattatgtgattctggag |
233043 |
T |
|
| Q |
324 |
cgaatgctaacctaatgagcttgaccaaggcaagggaattagggattaagaagatatcctcatatccttatacgatagggtatgctaatggccacgaaga |
423 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||||| || || | ||| |||||||| |||||||||||| | |||| |||||||||||| | ||||| |
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|
| T |
233042 |
caaactctaacctaatgagcttggccaaggcaagggagttgggaaataaaaagatatcatcatatccttatgcaatagagtatgctaatggaaaagaaga |
232943 |
T |
|
| Q |
424 |
agaggcacttagtgtacttaagaattttccacttaacatcagggacatcgattactatttagacatagtgattgcagacactagag |
509 |
Q |
| |
|
| | || || | ||||| |||||||| || ||||||| || | ||||||| | ||||||||| ||||||||| |||| |||| |
|
|
| T |
232942 |
aaaagctattggcatacttgagaattttgcaattaacattgagggcttcgattattgtttagacatcgtgattgcaaacaccagag |
232857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 415
Target Start/End: Original strand, 26827696 - 26827808
Alignment:
| Q |
303 |
aaggattgtatgattcaggagcgaatgctaacctaatgagcttgaccaaggcaagggaattagggattaagaagatatcctcatatccttatacgatagg |
402 |
Q |
| |
|
||||||| |||||||||| | | ||||||||||||||| ||||||||||||||||||| || || |||| | || |||||||||||||| ||||| |
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|
| T |
26827696 |
aaggattatatgattcagaaacaaatgctaacctaatgtgcttgaccaaggcaagggagttgggaattagatcggtagaatcatatccttatacaatagg |
26827795 |
T |
|
| Q |
403 |
gtatgctaatggc |
415 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
26827796 |
gtacgctaatggc |
26827808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 24537223 - 24537175
Alignment:
| Q |
45 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaa |
93 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
24537223 |
ccgccagagttcaatgttttgcatcaaattctcaagcagtacaaagtaa |
24537175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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