View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_high_51 (Length: 251)

Name: NF11599_high_51
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_high_51
NF11599_high_51
[»] chr4 (7 HSPs)
chr4 (13-104)||(29847884-29847975)
chr4 (32-96)||(1745448-1745511)
chr4 (46-96)||(20650006-20650055)
chr4 (58-96)||(30257444-30257482)
chr4 (63-100)||(21121654-21121691)
chr4 (59-95)||(53813910-53813946)
chr4 (61-96)||(25100393-25100428)
[»] chr6 (3 HSPs)
chr6 (11-94)||(6257243-6257325)
chr6 (59-95)||(30892321-30892357)
chr6 (63-147)||(31303998-31304075)
[»] chr5 (2 HSPs)
chr5 (58-96)||(24099443-24099481)
chr5 (59-96)||(12566923-12566960)
[»] chr8 (2 HSPs)
chr8 (59-96)||(41940096-41940133)
chr8 (63-104)||(5950139-5950180)
[»] chr1 (4 HSPs)
chr1 (59-96)||(8326998-8327035)
chr1 (59-104)||(18628967-18629012)
chr1 (59-104)||(25023486-25023531)
chr1 (59-104)||(50959523-50959568)
[»] chr2 (5 HSPs)
chr2 (32-96)||(5136200-5136263)
chr2 (32-147)||(39711673-39711786)
chr2 (11-88)||(39228919-39228996)
chr2 (59-104)||(9848114-9848159)
chr2 (59-95)||(8216773-8216809)
[»] chr3 (1 HSPs)
chr3 (68-96)||(28180528-28180556)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 29847884 - 29847975
Alignment:
Q  13 gagaattgaagaggtcaatccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 104  Q
    |||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||| |||||||||||  ||| ||||||||||    
T  29847884 gagaatcgaagaggtcaatccaccaaacactacggtttcaaagcagacgcgtaaaaactcagatcgagggatgagtcaaatgcgccagtaac 29847975  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 1745511 - 1745448
Alignment:
Q  32 ccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    |||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||    
T  1745511 ccaccaaacacaacagtttccaag-agacgcgtaagaactcagattgagggatgagtccaatacg 1745448  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 20650055 - 20650006
Alignment:
Q  46 agtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    ||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  20650055 agtttcaaa-cagatgcgtaagaactcagattgagggatgagttcaatacg 20650006  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 30257482 - 30257444
Alignment:
Q  58 gacgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  30257482 gacgcgtaaaaactcagatcgagggatgagttcaatacg 30257444  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 21121691 - 21121654
Alignment:
Q  63 gtaaaaactcagattgagggatgagttcaatacgccag 100  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  21121691 gtaaaaactcaaattgagggatgagttcaatacgccag 21121654  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 53813910 - 53813946
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatac 95  Q
    |||||||||||||||||| ||||||||||||||||||    
T  53813910 acgcgtaaaaactcagatcgagggatgagttcaatac 53813946  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 25100428 - 25100393
Alignment:
Q  61 gcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    |||||||||||||||| |||||||||||||||||||    
T  25100428 gcgtaaaaactcagatcgagggatgagttcaatacg 25100393  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 6257325 - 6257243
Alignment:
Q  11 cagagaattgaagaggtcaatccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaata 94  Q
    |||||||||||| |  |||  |||||||| |||||||||||||| || |||||||| ||||||||| ||||||||||| |||||    
T  6257325 cagagaattgaaaaaatcataccaccaaacacaacagtttcaaa-caaacgcgtaagaactcagatcgagggatgagtccaata 6257243  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 30892321 - 30892357
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatac 95  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30892321 acgcgtaaaaactcagatcgagggatgagttcaatac 30892357  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 31304075 - 31303998
Alignment:
Q  63 gtaaaaactcagattgagggatgagttcaatacgccagtaacgtaactacagaccctttcggattaacggaaccagactctttcg 147  Q
    |||| ||||||||| ||||||||||||||||||| |||||||       ||||||||||||| ||||  |||||| |||||||||    
T  31304075 gtaagaactcagatcgagggatgagttcaatacgtcagtaac-------cagaccctttcgggttaatcgaaccaaactctttcg 31303998  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 24099481 - 24099443
Alignment:
Q  58 gacgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24099481 gacgcgtaaaaactcagatcgagggatgagttcaatacg 24099443  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 12566960 - 12566923
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12566960 acgcgtaaaaactcagatcgagggatgagttcaatacg 12566923  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 41940096 - 41940133
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    |||||||||||||||||| |||||||||||||||||||    
T  41940096 acgcgtaaaaactcagatcgagggatgagttcaatacg 41940133  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 5950139 - 5950180
Alignment:
Q  63 gtaaaaactcagattgagggatgagttcaatacgccagtaac 104  Q
    ||||||||||| || ||||||||||||||||||| |||||||    
T  5950139 gtaaaaactcaaatcgagggatgagttcaatacgtcagtaac 5950180  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 8326998 - 8327035
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8326998 acgcgtaaaaactcagatcgagggatgagttcaatacg 8327035  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 18628967 - 18629012
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 104  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||||    
T  18628967 acgcgtaagaactcagattgagggatgagtccaatacgtcagtaac 18629012  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 25023486 - 25023531
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 104  Q
    ||||||||||||||| |||||||||||| | ||||||| |||||||    
T  25023486 acgcgtaaaaactcaaattgagggatgaatccaatacgtcagtaac 25023531  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 50959523 - 50959568
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 104  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaac 50959568  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 5136263 - 5136200
Alignment:
Q  32 ccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacg 96  Q
    |||||||| ||||| ||||| || ||||||||||| ||||||||| ||||||||||| |||||||    
T  5136263 ccaccaaatacaacggtttccaa-cagacgcgtaagaactcagatcgagggatgagtccaatacg 5136200  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 39711673 - 39711786
Alignment:
Q  32 ccaccaaaaacaac-agtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacgccagtaacgtaactacagaccctttcgg-attaa 129  Q
    |||||||| ||||| ||||||||  |||| ||||||||||||| ||| ||  ||||||||||||||  ||||||  |   |||||||||||||| |||||    
T  39711673 ccaccaaacacaaccagtttcaat-cagatgcgtaaaaactcaaatttagtaatgagttcaatacgttagtaaccaa---acagaccctttcggtattaa 39711768  T
Q  130 cggaaccagactctttcg 147  Q
    ||||||||||| ||||||    
T  39711769 cggaaccagaccctttcg 39711786  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 39228996 - 39228919
Alignment:
Q  11 cagagaattgaagaggtcaatccaccaaaaacaa-cagtttcaaagcagacgcgtaaaaactcagattgagggatgagt 88  Q
    |||||| | ||||| ||||| |||||||| |||| |||||||| | ||||||||||| ||||||||| |||||||||||    
T  39228996 cagagattcgaagaagtcaaaccaccaaacacaagcagtttcaga-cagacgcgtaagaactcagatcgagggatgagt 39228919  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 9848159 - 9848114
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 104  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaac 9848114  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 8216773 - 8216809
Alignment:
Q  59 acgcgtaaaaactcagattgagggatgagttcaatac 95  Q
    ||||||||||||||||||  |||||||||||||||||    
T  8216773 acgcgtaaaaactcagatcaagggatgagttcaatac 8216809  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 28180528 - 28180556
Alignment:
Q  68 aactcagattgagggatgagttcaatacg 96  Q
    |||||||||||||||||||||||||||||    
T  28180528 aactcagattgagggatgagttcaatacg 28180556  T

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