View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_58 (Length: 239)
Name: NF11599_high_58
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_58 |
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| [»] scaffold2055 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 30227542 - 30227761
Alignment:
| Q |
1 |
cattaataaatcaaagaaaccactatgtcttagctttcaaaattattaatttatgaatgaaaataaagttttagatgagtggttaaa-tattaacgtgtc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30227542 |
cattaataaatcaaagaaaccactatgtcttagctttcaaaattattaatttatgaatgaaaataaagttttagatgagtggttaaaatattaacgtgtc |
30227641 |
T |
|
| Q |
100 |
acacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttgattagttcacgagta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227642 |
acacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttgattagttcacgagta |
30227741 |
T |
|
| Q |
200 |
ttccaaacaaactcaagagg |
219 |
Q |
| |
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|||||||||||||||||||| |
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| T |
30227742 |
ttccaaacaaactcaagagg |
30227761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 30030984 - 30031138
Alignment:
| Q |
69 |
ttttagatgagtggttaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaaga |
168 |
Q |
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|||||| ||||| ||||| ||||| |||||||||||||||| ||| |||| |||| |||||||||| |||||||||||| ||||||||||||||||| |
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| T |
30030984 |
ttttaggtgagttattaaagattaatgtgtcacacacctcaggccctcttagtctcatctccaaatccatgagcaaagctataagataaacactgaaaga |
30031083 |
T |
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| Q |
169 |
acgtctcttcctcttgattagttcacgagtattccaaacaaactcaagagggttg |
223 |
Q |
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| T |
30031084 |
atgtctcttcctcttgattagttcacgagaattccaaacaaactcaagagggttg |
30031138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 30047271 - 30047405
Alignment:
| Q |
85 |
aaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttg |
184 |
Q |
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||||||||| ||| ||||||||||| || ||||| |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
30047271 |
aaatattaatgtgggacacacctcaggtcctcttaatctcatctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttg |
30047370 |
T |
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| Q |
185 |
attagttcacgagtattccaaacaaactcaagagg |
219 |
Q |
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||||||||||| | ||||||||||||||||||||| |
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| T |
30047371 |
attagttcacgggaattccaaacaaactcaagagg |
30047405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 30061612 - 30061746
Alignment:
| Q |
85 |
aaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaagaacgtctcttcctcttg |
184 |
Q |
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||||||||| ||| ||||||||||| || ||||| |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
30061612 |
aaatattaatgtgggacacacctcaggtcctcttaatctcatctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttg |
30061711 |
T |
|
| Q |
185 |
attagttcacgagtattccaaacaaactcaagagg |
219 |
Q |
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||||||||||| | ||||||||||||||||||||| |
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| T |
30061712 |
attagttcacgggaattccaaacaaactcaagagg |
30061746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 30221848 - 30221699
Alignment:
| Q |
69 |
ttttagatgagtggttaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaaga |
168 |
Q |
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||||||||||||||||||||| | |||| ||| ||||||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||| |||||| |
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| T |
30221848 |
ttttagatgagtggttaaataat---gtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacctatgagataaacaccgaaaga |
30221752 |
T |
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| Q |
169 |
acgtctcttcctcttgattagttcacgagtattccaaacaaactcaagagggt |
221 |
Q |
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||||||||||| ||||||| | ||||| |||||||||||||||||||||| |
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| T |
30221751 |
gcgtctcttccttttgattaacttacgagctttccaaacaaactcaagagggt |
30221699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30047238 - 30047275
Alignment:
| Q |
28 |
tcttagctttcaaaattattaatttatgaatgaaaata |
65 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
30047238 |
tctttgctttcaaaattattaatttatgaatgaaaata |
30047275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30061579 - 30061616
Alignment:
| Q |
28 |
tcttagctttcaaaattattaatttatgaatgaaaata |
65 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
30061579 |
tctttgctttcaaaattattaatttatgaatgaaaata |
30061616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 969 - 1008
Alignment:
| Q |
28 |
tcttagctttcaaaattattaatttatgaatgaaaataaa |
67 |
Q |
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||||||||||||||||||||| ||||||||| |||||||| |
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| T |
969 |
tcttagctttcaaaattattagtttatgaataaaaataaa |
1008 |
T |
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