View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_high_59 (Length: 239)

Name: NF11599_high_59
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_high_59
NF11599_high_59
[»] chr8 (2 HSPs)
chr8 (1-223)||(11485261-11485483)
chr8 (41-198)||(44957352-44957509)
[»] chr3 (29 HSPs)
chr3 (1-221)||(10500799-10501019)
chr3 (40-159)||(11781645-11781764)
chr3 (34-165)||(10433701-10433832)
chr3 (40-159)||(10517772-10517891)
chr3 (34-189)||(10032260-10032415)
chr3 (43-165)||(10077550-10077672)
chr3 (43-189)||(10663783-10663929)
chr3 (40-193)||(8861539-8861692)
chr3 (40-193)||(11130689-11130842)
chr3 (40-193)||(11159680-11159833)
chr3 (43-165)||(9850020-9850142)
chr3 (43-189)||(10089047-10089193)
chr3 (43-189)||(10195930-10196076)
chr3 (43-189)||(11769491-11769637)
chr3 (40-210)||(13161216-13161386)
chr3 (40-210)||(13289901-13290071)
chr3 (40-185)||(11148517-11148662)
chr3 (43-210)||(10127164-10127331)
chr3 (45-188)||(10363466-10363609)
chr3 (43-210)||(13171267-13171434)
chr3 (43-210)||(13344325-13344492)
chr3 (43-165)||(9839142-9839264)
chr3 (34-178)||(10260966-10261110)
chr3 (43-210)||(10184478-10184645)
chr3 (43-221)||(13333129-13333307)
chr3 (40-193)||(10889559-10889712)
chr3 (43-134)||(10527670-10527761)
chr3 (43-165)||(10375511-10375633)
chr3 (55-210)||(10580837-10580992)
[»] chr4 (1 HSPs)
chr4 (31-193)||(17852577-17852739)
[»] chr2 (1 HSPs)
chr2 (43-189)||(26907154-26907300)
[»] scaffold0002 (3 HSPs)
scaffold0002 (43-210)||(135554-135721)
scaffold0002 (43-210)||(145605-145772)
scaffold0002 (43-159)||(153910-154026)
[»] chr1 (1 HSPs)
chr1 (40-159)||(826198-826317)
[»] chr6 (1 HSPs)
chr6 (1-110)||(31679357-31679466)
[»] chr7 (1 HSPs)
chr7 (42-165)||(29836921-29837044)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11485483 - 11485261
Alignment:
Q  1 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11485483 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 11485384  T
Q  101 gaataggaaatgcgcatgcaacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11485383 gaataggaaatgcgcatgcgacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccg 11485284  T
Q  201 atcccaatcaagataattgtcgt 223  Q
    |||||||||||||||||||||||    
T  11485283 atcccaatcaagataattgtcgt 11485261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 44957352 - 44957509
Alignment:
Q  41 caaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttc 140  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||| || | |||    
T  44957352 caaatgcatgctttgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaatcggaaatgtgtgtgcaacctctgcaacgttttgttc 44957451  T
Q  141 gcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaac 198  Q
     |||||||||||||| ||||||||| ||||| |||  ||  ||||||| |||||||||    
T  44957452 acgtgttgttatgatgaccttgctttcagttcctcggttggtcaagggtgttattaac 44957509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10501019 - 10500799
Alignment:
Q  1 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 100  Q
    ||||| |||||||||||||| |||| | | |||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  10501019 tctagctttgggtatttaccacgaacatagtcttcatcaccaaatgcatgcttcgagagtaaagtccaacaatcatcatcagatagaggttctaatttat 10500920  T
Q  101 gaataggaaatgcgcatgcaacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccg 200  Q
    |||||||||||| |||||| |||||||||||||| | ||||||||||||||| ||||| |||| | | |||||||  ||| |||||||||||||||||      
T  10500919 gaataggaaatgtgcatgcgacctctgcaactttttgttcgcgtgttgttattatcactttgcctcctgtttctctgttagtcaagggagttattaactc 10500820  T
Q  201 atcccaatcaagataattgtc 221  Q
    |||||| |||| |||| ||||    
T  10500819 atcccagtcaacataactgtc 10500799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 11781645 - 11781764
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |  ||| |||||||||||||| | ||    
T  11781645 ccaaatgcatgtttcgagagtaaagaccaacaatcttcatgagatagaggttctaatgcatgaataggaaatgtgtgtgccacctctgcaactttttgtt 11781744  T
Q  140 cgcgtgttgttatgatcacc 159  Q
     ||| |||||||| ||||||    
T  11781745 ggcgagttgttataatcacc 11781764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 10433701 - 10433832
Alignment:
Q  34 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactt 133  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||| |  ||| ||||| |||||||    
T  10433701 tcactgcccaatgcatgcttcgagagtaaagaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactt 10433800  T
Q  134 tctcttcgcgtgttgttatgatcaccttgctt 165  Q
    | | || ||| |||||||| |||||| |||||    
T  10433801 tttgttggcgcgttgttataatcaccatgctt 10433832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 10517891 - 10517772
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| |  ||| |||||||||||||| | ||    
T  10517891 ccaaatgcatgttttgagagtaaagaccaacaatcttcatgagatagaggttctaattcctgaataggaaatgtgtgtgccacctctgcaactttttgtt 10517792  T
Q  140 cgcgtgttgttatgatcacc 159  Q
     ||| |||||||| ||||||    
T  10517791 ggcgcgttgttataatcacc 10517772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 10032415 - 10032260
Alignment:
Q  34 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactt 133  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||  |||||| ||| || || ||| |||||||||| |||||| ||||| |||||||    
T  10032415 tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt 10032316  T
Q  134 tctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    |   || |||||||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10032315 ttcgttggcgtgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 10077672 - 10077550
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || |||||| |||||||||||||||  |||| |||||||||| |||| |||||||||| || ||| |||||||||||||| | || ||    
T  10077672 aatgcatgctttgaaagtaaataccaacaatcttcatttgataaaggttctaatatatgtataggaaatgtgcgtgccacctctgcaactttttgttggc 10077573  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    |||||||||| |||||| |||||    
T  10077572 gtgttgttataatcaccatgctt 10077550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 10663929 - 10663783
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| ||||||||||||||||  |||||| ||||||||||||| |||||||||| |  ||| ||||| |||||||| | |||||    
T  10663929 aatgcatgctttgaaagtaaggaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactttttgttcgc 10663830  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10663829 gcgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10663783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 8861692 - 8861539
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  8861692 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 8861593  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| | ||| ||| ||||| || | | |||||||||||| |||||||    
T  8861592 ggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggagtta 8861539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 11130689 - 11130842
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  11130689 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 11130788  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| | ||| ||| ||||| || | | |||||||||||| |||||||    
T  11130789 ggcgtgttgtgacgatgaccctgcttccattgtttccattaatcaaaggagtta 11130842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 11159680 - 11159833
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  11159680 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 11159779  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| | ||| ||| ||||| || | | |||||||||||| |||||||    
T  11159780 ggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggagtta 11159833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 9850142 - 9850020
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| | ||||||||||| || ||||||| |  ||| ||||| |||||||| | || ||    
T  9850142 aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgccacctcagcaactttttgttggc 9850043  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    |||||||||| |||||| |||||    
T  9850042 gtgttgttataatcaccatgctt 9850020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 10089193 - 10089047
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||| ||||||||||||||  || ||| ||||||||||||| |||||||||| |  ||| ||||| || ||||| |||| ||    
T  10089193 aatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggc 10089094  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10089093 gcgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10089047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 10196076 - 10195930
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||| ||||||||||||||  || ||| ||||||||||||| |||||||||| |  ||| ||||| || ||||| |||| ||    
T  10196076 aatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggc 10195977  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10195976 gcgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10195930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 11769637 - 11769491
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| ||| ||||| ||| |||||||||| |  ||| ||||| ||||||||   || ||    
T  11769637 aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttaattcatgtataggaaatgtgtgtgccacctcagcaacttttcgttggc 11769538  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    |||||||||| |||||| ||||| ||| || ||||||| | ||||||    
T  11769537 gtgttgttataatcaccatgcttccaggttttccattactgaaggga 11769491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 13161386 - 13161216
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | ||    
T  13161386 ccaaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgtt 13161287  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
     ||||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13161286 ggcgtgttgtgatgatcaccctacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 13161216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 13290071 - 13289901
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | ||    
T  13290071 ccaaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgtt 13289972  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
     ||||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13289971 ggcgtgttgtgatgatcaccctacttcctgttttgccgttaatcaatggagttactaactcatcccaatca 13289901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 11148517 - 11148662
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  11148517 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 11148616  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaa 185  Q
     ||||||||| | ||| ||| ||||| || | | ||||||||||||    
T  11148617 ggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaa 11148662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 10127331 - 10127164
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||||||||||||||||||||| |||||   || || || ||| |||||||||| || ||| ||||| |||||||| | || ||    
T  10127331 aatgcatgctttgatagtaaagaccaacaatcttcatctgatagtacttttagttcatgtataggaaatgtgcgtgccacctcagcaactttttgttggc 10127232  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    | |||||||| |||||| ||||| ||| || ||||||||| |||||| ||| || |  ||||||||||    
T  10127231 gcgttgttataatcaccatgcttccaggttttccattaatgaagggacttactagctcatcccaatca 10127164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 10363466 - 10363609
Alignment:
Q  45 tgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgcgt 144  Q
    ||||||||| |||||||||| ||||||||||||||  |||||| | ||||||||||| |||||||||| |  ||| ||||| || ||||| |||| |||     
T  10363466 tgcatgctttgagagtaaagtccaacaatcttcatttgatagaagatctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggcgc 10363565  T
Q  145 gttgttatgatcaccttgcttacagtttctccattaatcaaggg 188  Q
    |||||||| |||||| ||||| ||| || ||||| ||| |||||    
T  10363566 gttgttataatcaccatgcttccaggttttccatcaatgaaggg 10363609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 13171434 - 13171267
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  13171434 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 13171335  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13171334 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 13171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 13344492 - 13344325
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  13344492 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 13344393  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13344392 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 13344325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 9839264 - 9839142
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| | ||||||||||| || ||||||| |  ||| ||||| |||||||| | || ||    
T  9839264 aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgccacctcagcaactttttgttggc 9839165  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    | |||||||| |||||| |||||    
T  9839164 gcgttgttataatcaccatgctt 9839142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 10261110 - 10260966
Alignment:
Q  34 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactt 133  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||  |||||| ||| || || ||| |||||||||| |||||| ||||| |||||||    
T  10261110 tcactgcccaatgcatgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt 10261011  T
Q  134 tctcttcgcgtgttgttatgatcaccttgcttacagtttctccat 178  Q
    | | ||  || |||||||| |||||| ||||| ||| || |||||    
T  10261010 tttgttgccgcgttgttataatcaccatgcttccaggttttccat 10260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 10184645 - 10184478
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||| ||||||||||||||||  |||||| ||| || || ||| |||||||||| |  ||| ||||| || ||||| |||| ||    
T  10184645 aatgcatgctttgagagtaacgaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgtgtgccacctcagctactttttcttggc 10184546  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| |||||| ||| || |  ||||||||||    
T  10184545 gcgttgttataatcaccatgcttccaggttttccatcaatgaagggacttactagctcatcccaatca 10184478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 13333307 - 13333129
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  13333307 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 13333208  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatcaagataattgtc 221  Q
    ||||||| ||||||||| | ||| |  |||  || |||||||  ||||||| ||||  ||||||||||  |||||||||    
T  13333207 gtgttgtgatgatcaccctacttccttttttgccgttaatcagtggagttactaactcatcccaatcattataattgtc 13333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 10889712 - 10889559
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  ||||||||| ||||||||| | | |  |||||||||||||||||| |  |    
T  10889712 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttgtgaataggatacgtgtgtgcaacctctgcaactttttgct 10889613  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| ||||  ||| ||||| || | | |||||||||||| |||||||    
T  10889612 ggcgtgttgtgatgacgaccctgcttccactgtttccattaatcaaaggagtta 10889559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 10527761 - 10527670
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaacttt 134  Q
    ||||||||||| |||||||||||||||||||||||||  |||| | ||| || |||||| |||||||||| || ||| ||||| ||||||||    
T  10527761 aatgcatgctttgagagtaaagaccaacaatcttcatttgataaaagttttagtttatgtataggaaatgtgcgtgccacctcagcaacttt 10527670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 10375511 - 10375633
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| ||||||||||||||||| |||||||  |||||| ||| || || ||| |||||||||| |||||| ||||  ||||||||   || ||    
T  10375511 aatgcatgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgctaccttagcaacttttcgttggc 10375610  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    | |||||||| |||||| |||||    
T  10375611 gcgttgttataatcaccatgctt 10375633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 10580992 - 10580837
Alignment:
Q  55 gagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgcgtgttgttatga 154  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||| | || |||   |  ||| | || || |||||| | || ||| |||||||| |    
T  10580992 gagagtaaagaccaacaatcttcatttgatagaggttctaaattatgtacagcaaacatgtgtgccatctttgtaactttttgttggcgcgttgttataa 10580893  T
Q  155 tcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||| ||||| ||| || ||||||||| |||||| ||| || |  ||||||||||    
T  10580892 tcaccatgcttccaggttttccattaatgaagggacttactagctcatcccaatca 10580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 17852577 - 17852739
Alignment:
Q  31 tcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaa 130  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||||||| ||||    
T  17852577 tcttcacctccaaatgcatgctttgagagcaaagaccaacaatcttcatcggatataggttctaatttatgaattggaaatgtgcgtgcaacctccgcaa 17852676  T
Q  131 ctttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
    |||| | |  ||||||||||||||| ||||||||| ||| || ||| |||| |||||||||||    
T  17852677 ctttttttaggcgtgttgttatgatgaccttgcttccagcttttcccttaaacaagggagtta 17852739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 26907300 - 26907154
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||    ||| |||||||||||||| | || ||    
T  26907300 aatgcatgctttgagagtaaagaccaacaatcttcagttgatagaggttctaatttatgtataggaaatgtatgtgccacctctgcaactttttgttggc 26907201  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  26907200 gcgttgttataatcaccatgcttccaggttttccatgaatgaaggga 26907154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 135554 - 135721
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  135554 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 135653  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  135654 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 135721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 145605 - 145772
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  145605 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 145704  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  145705 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 145772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 153910 - 154026
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  153910 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 154009  T
Q  143 gtgttgttatgatcacc 159  Q
    ||||||| |||||||||    
T  154010 gtgttgtgatgatcacc 154026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 826317 - 826198
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||| ||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||||||| | |    |||||||||||||||| | || |    
T  826317 ccaaatgcatacttggagagtaaagaccaacaatgttcgtccgatagaggttccaatttatgaataggatacgtatgtgcaacctctgcaactctttcgt 826218  T
Q  140 cgcgtgttgttatgatcacc 159  Q
     ||||||||| |||||||||    
T  826217 agcgtgttgtgatgatcacc 826198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31679357 - 31679466
Alignment:
Q  1 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 100  Q
    |||||| ||||||||||||  | |  || ||||||||  |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  31679357 tctaggcttgggtatttacggccacaaagttcttcacttccaaatgcatgctttgagagtaaagaccagcaatcatcatctgatagaggttctaatttat 31679456  T
Q  101 gaataggaaa 110  Q
      ||||||||    
T  31679457 agataggaaa 31679466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 29837044 - 29836921
Alignment:
Q  42 aaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcg 141  Q
    |||||||  ||| |||||||||  |||| | ||||| || |||||| || |||||||||||||  ||||||| | | || ||||||||||| ||| |||     
T  29837044 aaatgcacactttgagagtaaatgccaagagtcttcgtccgatagatgtgctaatttatgaatgtgaaatgcacgtacagcctctgcaactctctgttca 29836945  T
Q  142 cgtgttgttatgatcaccttgctt 165  Q
    |||||||| ||||| |||||||||    
T  29836944 cgtgttgtaatgattaccttgctt 29836921  T

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