View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_61 (Length: 239)
Name: NF11599_high_61
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 40506174 - 40506395
Alignment:
| Q |
3 |
gtgcattgatttattgagattcataccaatttgaatcctacaacctctgcacgatgatcatgcagattactttctaggaaggaaatcactgtattttgtc |
102 |
Q |
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| T |
40506174 |
gtgcattgatttatcgagattcataacaatttgaatcctacaacctctgcacgatgatcatgcagattactttctaggaaggaaatcactgtattttgtc |
40506273 |
T |
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| Q |
103 |
tcttgatcaatgattctatgaaatgtatctcacactatccttttacaaagtaagttataactgaatcaacaactaacttatgcaacaagctaaacaggct |
202 |
Q |
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| T |
40506274 |
tcttgatcaatgattctatgaaatgtatctcacattatccttttacaaagtaagttataactgaatcaacaactaacttatgcaacaagctaaataggct |
40506373 |
T |
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| Q |
203 |
catctaattaagtaggcagaag |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
40506374 |
catctaattaagtaggcagaag |
40506395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 22138665 - 22138884
Alignment:
| Q |
3 |
gtgcattgatttattgagattcataccaatttgaatcctacaacctctgcacgatgatcatgcagattactttctaggaaggaaatcactgtattttgtc |
102 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22138665 |
gtgcattgatttatcgagattcataacaatttgaatcctacaacctctgcacgatgatcatgcagattactttntaggaaggaaatcactgtattttgtc |
22138764 |
T |
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| Q |
103 |
tcttgatcaatgattctatgaaatgtatctcacactatccttttacaaagtaagttataactgaatcaacaactaacttatgcaacaagctaaacaggct |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22138765 |
tcttgatcaatgattctatgaaatgtatctcacattatccttttacaaagtaagttataactgaatcaacaactaacttatgcaacaagctaaataggct |
22138864 |
T |
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| Q |
203 |
catctaattaagtaggcaga |
222 |
Q |
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|||||||||||||||||||| |
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| T |
22138865 |
catctaattaagtaggcaga |
22138884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 50746400 - 50746363
Alignment:
| Q |
89 |
cactgtattttgtctcttgatcaatgattctatgaaat |
126 |
Q |
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|||| |||||| |||||||||||||||||||||||||| |
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| T |
50746400 |
cactctattttctctcttgatcaatgattctatgaaat |
50746363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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