View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_63 (Length: 238)
Name: NF11599_high_63
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_63 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6119462 - 6119240
Alignment:
| Q |
1 |
cttacactaacagctcatacattagcaaaaatgtagatgtaaggatgaatagatataagattagcattcaaatatgtgatgaagatatctgtttggattt |
100 |
Q |
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| T |
6119462 |
cttacactaacagctcatacattagcaaaaatgtagatgtaaggatgaatagatataagattagcattcaaatatgtgatgaagatatctgtttggattt |
6119363 |
T |
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| Q |
101 |
agtttgttagtttgttagtataaggataagatggaatccgcagtttcttcacagatggtggtggtgattgttgaagattcttagtttccaggtaatgaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6119362 |
agtttgttagtttgttagtataaggataagatggaatccgcagtttcttcacaaatggtggtggtgattgttgaagattcttagtttccaggtaatgaaa |
6119263 |
T |
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| Q |
201 |
caatcaaccataagtgtcattaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6119262 |
caatcaaccataagtgtcattaa |
6119240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 6174122 - 6174230
Alignment:
| Q |
107 |
ttagtttgttagtataaggataagatggaatccgcagtttcttcacagatggtggtggtgattgttgaagattcttagtttccaggtaatgaaacaatca |
206 |
Q |
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|||||||||||||||||| ||||||||||||| | || |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6174122 |
ttagtttgttagtataagaataagatggaatctgtagattcttcactaatggtggcggtgattgttgaagattcttagtttcctggtaatgaaacaatca |
6174221 |
T |
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| Q |
207 |
accataagt |
215 |
Q |
| |
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||||||||| |
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| T |
6174222 |
accataagt |
6174230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 6136067 - 6136183
Alignment:
| Q |
107 |
ttagtttgttagtataaggataagatggaatccgcagtttcttcacagatggtggtggtgattgttgaagattcttagtttccaggtaatgaaacaatca |
206 |
Q |
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|||||||||||||||||| ||| |||||||| | || |||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
6136067 |
ttagtttgttagtataagaatatgatggaatttgtagattcttcactaatggtggtggtgattgttgaagatgcttagtttcctggtaatgatacaatca |
6136166 |
T |
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| Q |
207 |
accataagtgtcattaa |
223 |
Q |
| |
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||||||||| ||||||| |
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| T |
6136167 |
accataagtatcattaa |
6136183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6172992 - 6173079
Alignment:
| Q |
1 |
cttacactaacagctcatacattagcaaaaatgtagatgtaaggatgaatagatataagattagcattcaaatatgtgatgaagatat |
88 |
Q |
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|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
6172992 |
cttacactaacagctcatacgttagtaaagatgtagatgtaaggatgaatagatataagattagcattcaaatttccgatgaagatat |
6173079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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