View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_high_9 (Length: 583)
Name: NF11599_high_9
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_9 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Original strand, 25215706 - 25216279
Alignment:
| Q |
17 |
aaagtaatatatagatatatgtcgtttgttgattccaactccatcgtgaaatcaacaatctcgtttcttcaatcacttctttgtatcaacgatacaacac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25215706 |
aaagtaatatatagatatatgtcgtttgttgattccaaatccatcgtgaaatcaacaatctcgtttcttcaatcacttctttgtatcaacgatacaacac |
25215805 |
T |
|
| Q |
117 |
tttgcttcagtgccgccgcataattgcttttcttttctatgtgagataatcacgatgaagaaacaaaagcataaccataaccctaaccctaaccctaacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
25215806 |
tttgcttcagtgccgccgcataattgcttttctgttctatgtgagataatcatgatgaagagacaaaggcataaccataaccctaaccctaaccctaacc |
25215905 |
T |
|
| Q |
217 |
aagacagacttagcgacttgtctgattgtcttctacttcacatactctcttttctagacaccaa-------------acatgcatattgtccccaagatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
25215906 |
aagacagacttagcgacttgtctgattgtcttctacttcacatactctcttttctagacaccaaacatgcagtccaaacatgcatattgtccccaagatg |
25216005 |
T |
|
| Q |
304 |
gaacaatctgtggaaacatctttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgttttgtct |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25216006 |
gaacaatctctggaaacatctttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgttttgtct |
25216105 |
T |
|
| Q |
404 |
cttcgcaatgacactaactcactgctagccctcgattttcaccgttcaggtacaatggaccctcgcttactcaaaagaattttgaaatatgctttctcac |
503 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25216106 |
cttcgcaatgacactacctcactgctagccctcgattttcaccgttcaggtacaatggaccctcgcttactcaaaagaattttgaaatatgctttctcac |
25216205 |
T |
|
| Q |
504 |
ataatgtccaacaattacaagttgatgtcaaatgttttaatccacaattttccccttccttcttttcatctcac |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
25216206 |
ataatgtccaacaattacaagttgatgtcaaatgtgttaatccacaattttccccttccttcttttcatgtcac |
25216279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Original strand, 25279858 - 25280431
Alignment:
| Q |
17 |
aaagtaatatatagatatatgtcgtttgttgattccaactccatcgtgaaatcaacaatctcgtttcttcaatcacttctttgtatcaacgatacaacac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25279858 |
aaagtaatatatagatatatgtcgtttgttgattccaaatccatcgtgaaatcaacaatctcgtttcttcaatcacttctttgtatcaacgatacaacac |
25279957 |
T |
|
| Q |
117 |
tttgcttcagtgccgccgcataattgcttttcttttctatgtgagataatcacgatgaagaaacaaaagcataaccataaccctaaccctaaccctaacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
25279958 |
tttgcttcagtgccgccgcataattgcttttctgttctatgtgagataatcatgatgaagagacaaaggcataaccataaccctaaccctaaccctaacc |
25280057 |
T |
|
| Q |
217 |
aagacagacttagcgacttgtctgattgtcttctacttcacatactctcttttctagacaccaa-------------acatgcatattgtccccaagatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
25280058 |
aagacagacttagcgacttgtctgattgtcttctacttcacatactctcttttctagacaccaaacatgcagtccaaacatgcatattgtccccaagatg |
25280157 |
T |
|
| Q |
304 |
gaacaatctgtggaaacatctttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgttttgtct |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25280158 |
gaacaatctctggaaacatctttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgttttgtct |
25280257 |
T |
|
| Q |
404 |
cttcgcaatgacactaactcactgctagccctcgattttcaccgttcaggtacaatggaccctcgcttactcaaaagaattttgaaatatgctttctcac |
503 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25280258 |
cttcgcaatgacactacctcactgctagccctcgattttcaccgttcaggtacaatggaccctcgcttactcaaaagaattttgaaatatgctttctcac |
25280357 |
T |
|
| Q |
504 |
ataatgtccaacaattacaagttgatgtcaaatgttttaatccacaattttccccttccttcttttcatctcac |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25280358 |
ataatgtccaacaattacaagttgatgtcaaatgtgttaatccacaattttccccttccttcttttcatgtcac |
25280431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 139 - 577
Target Start/End: Original strand, 25064137 - 25064589
Alignment:
| Q |
139 |
attgcttttcttttctatgtga-gataatcacgatgaagaaacaaaagcataaccataaccctaaccctaaccctaaccaagacagacttagcgacttgt |
237 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
25064137 |
attgcttttcttttctctgtgaagttaatcacaatgaagagacagatgcataaccacaaccctaaccctaaccctaacaaagacagagttagcaacttgc |
25064236 |
T |
|
| Q |
238 |
ctgattgtcttctacttcacatactctcttttctagacaccaa-------------acatgcatattgtccccaagatggaacaatctgtggaaacatct |
324 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25064237 |
ctgattgtgttctacttcacatactctcctttctagacaccaaacatgcagtccaaacatgcatattgtccccaagatggaacaatctttggaaacatct |
25064336 |
T |
|
| Q |
325 |
ttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgttttgtctcttcgcaatgacactaactca |
424 |
Q |
| |
|
||| ||| ||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||||| |||| |
|
|
| T |
25064337 |
ttcctccattaaactaagttccagacactttccaaaaaatctcaagggtttcaccaaatttgtgtctcacgttttctctcttcgcgatgacactacctca |
25064436 |
T |
|
| Q |
425 |
ctgctagccctcgattttcaccgttcaggtacaatggaccctcgcttactcaaaagaattttgaaatatgctttctcacataatgtccaacaattacaag |
524 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
25064437 |
ctgcttgccctcgattttcagcgtgagggtacaatggaccctcgcatactcaaaataattttgaaatatgctttcgcacataatgtccaacaattagaag |
25064536 |
T |
|
| Q |
525 |
ttgatgtcaaatgttttaatccacaattttccccttccttcttttcatctcac |
577 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
25064537 |
ttgatgtcaaatgttttaatccacaatttcccccttccttcttttcatgtcac |
25064589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 570
Target Start/End: Complemental strand, 7058834 - 7058565
Alignment:
| Q |
301 |
atggaacaatctgtggaaacatctttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgttttg |
400 |
Q |
| |
|
|||||| ||||| |||||| ||||| | ||||||||||| || || ||||||| || |||| ||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
7058834 |
atggaagaatctctggaaatatcttcccatccttaaattaacttttagacactttaagaagaatcccaagggtttcaccaaatttgtgtctcagatattg |
7058735 |
T |
|
| Q |
401 |
tctcttcgcaatgacactaactcactgctagccctcgattttcaccgttcaggtacaatggaccctcgcttactcaaaagaattttgaaatatgctttct |
500 |
Q |
| |
|
||||||||||||||| | | |||| | | || ||||||||| || |||| | |||| | || | ||||| |||||||||||||||||||||| | |
|
|
| T |
7058734 |
tctcttcgcaatgactcaacagcacttcacacacttgattttcactgtcggggtagactggagcttcacatactcgaaagaattttgaaatatgcttttt |
7058635 |
T |
|
| Q |
501 |
cacataatgtccaacaattacaagttgatgtcaaatgttttaatccacaattttccccttccttcttttc |
570 |
Q |
| |
|
||||||||||||| | |||| ||||||| || ||| || ||| |||||| ||| |||||||||||| |
|
|
| T |
7058634 |
cacataatgtccagcgattaggagttgatctctcttgtaatattccccaatttcccctttccttcttttc |
7058565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 7178009 - 7178054
Alignment:
| Q |
298 |
aagatggaacaatctgtggaaacatctttcatcccttaaattaagt |
343 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||| ||||||| |
|
|
| T |
7178009 |
aagatggaacaatctttggaaacgtctttcaacccttagattaagt |
7178054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 27701926 - 27701811
Alignment:
| Q |
297 |
caagatggaacaatctgtggaaacatctttcatcccttaaattaagttctatacactttccaaaaaatctcaagggttttaccaaatttgtttctcatgt |
396 |
Q |
| |
|
|||||||||||||||| ||||||| |||| || |||||| ||||| || ||||||| |||| ||||||| ||||||||||||| || |||| || |
|
|
| T |
27701926 |
caagatggaacaatctctggaaacgtcttccaacccttagattaaactcctcacacttt---aaaactctcaagagttttaccaaattcgtgtctcgggt |
27701830 |
T |
|
| Q |
397 |
tttgtctcttcgcaatgac |
415 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
27701829 |
tttgtctcttcgcgatgac |
27701811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 7222371 - 7222423
Alignment:
| Q |
471 |
tactcaaaagaattttgaaatatgctttctcacataatgtccaacaattacaa |
523 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| | ||||||| |
|
|
| T |
7222371 |
tactcaaaagaattttgaaacatgctttttcacataatgtccagcgattacaa |
7222423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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