View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_low_1 (Length: 830)

Name: NF11599_low_1
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_low_1
NF11599_low_1
[»] chr2 (4 HSPs)
chr2 (18-522)||(1232985-1233496)
chr2 (527-784)||(1233529-1233770)
chr2 (727-783)||(35029861-35029917)
chr2 (727-783)||(34229074-34229130)
[»] chr3 (5 HSPs)
chr3 (727-784)||(40809592-40809649)
chr3 (727-784)||(40810284-40810341)
chr3 (727-783)||(35903702-35903758)
chr3 (727-784)||(8922897-8922954)
chr3 (727-784)||(41325835-41325892)
[»] chr4 (1 HSPs)
chr4 (728-783)||(44516799-44516854)
[»] chr8 (3 HSPs)
chr8 (727-776)||(8814483-8814532)
chr8 (721-778)||(17943018-17943075)
chr8 (727-784)||(42578722-42578779)
[»] chr6 (1 HSPs)
chr6 (738-778)||(34260140-34260180)


Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 1232985 - 1233496
Alignment:
Q  18 aatctccgcacacattagaacacgaggttaaaatctgtttaatgttaatatactggccaaatacattaccttatgaactaaccattggtttaagtgcact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  1232985 aatctccgcacacattagaacacgaggttaaaatctgtttaatgttaatatactgaccaaatacattatcttatgaactaaccattggtttaagtgcact 1233084  T
Q  118 gcttttaagctttcttgaaatgcattatatataaattaaactatataccatcattgacagtatgatgaatacattgtcctaatattcattgctagtaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1233085 gcttttaagctttcttgaaatgcattatatataaattaaactatataccatcattgacagtatgatgaatacattgtcctaatattcattgctagtaatt 1233184  T
Q  218 taccattaacatggacttccatatagggatgatagctcatattagaagcaacaaaagaaaattgccaatttgatccac------------tatatataaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||            ||||||||||    
T  1233185 taccattaacatggacttccatatagggatgatagctcatattagaagcagcaaaagaaaattgccaatttgatccactatatatatatatatatataaa 1233284  T
Q  306 cactaactcatgttgaattcagccttgtataattgctacctaaatatgatggtggaatggaaattatggatgaagccactctgcttttatgtatttggaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1233285 cactaactcatgttgaattcagccttgtataattgctacctaaatatgatggtggaatggaaattatggatgaagccactctgcttttatgtatttggaa 1233384  T
Q  406 tagacgaatagcatcaaatcaatgatagtgattagtgaaagtaactttgttcttctacgta--ctctctaattccattataggctttttactctctcttc 503  Q
    ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1233385 taggcgaatagcatcaaatcaatga-------tagtgaaagtaactttgttcttctacgtactctctctaattccattataggctttttactctctcttc 1233477  T
Q  504 caaaattagcaacttattc 522  Q
    |||||||||||||||||||    
T  1233478 caaaattagcaacttattc 1233496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 527 - 784
Target Start/End: Original strand, 1233529 - 1233770
Alignment:
Q  527 aagcatgatggtcttggtactgttgatgggtttggcaacccatggaattaagataaggaaaactaactctacctaaaggtggaaaataagagttcaattt 626  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||               ||||||||||| |||||||||||||||||||||    
T  1233529 aagcatgatggtcttggtactgttgatgggtttggca-cccatggaaccaag---------------tctacctaaagatggaaaataagagttcaattt 1233612  T
Q  627 gatatagttggtgaatacctttagtatttcaattacnnnnnnnnnggtacaatttacctatcacattttaatcccccctccaatttaccggtctattttt 726  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1233613 gatatagttggtgaatacctttagtatttcaattactttttttttggtacaatttacctatcacattttaatcccccctccaatttaccagtctattttt 1233712  T
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 784  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggc 1233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 727 - 783
Target Start/End: Complemental strand, 35029917 - 35029861
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 783  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  35029917 ctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 783
Target Start/End: Complemental strand, 34229130 - 34229074
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 783  Q
    ||||||||| | |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  34229130 ctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtgg 34229074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 784
Target Start/End: Original strand, 40809592 - 40809649
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 784  Q
    |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||||    
T  40809592 ctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggc 40809649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 784
Target Start/End: Complemental strand, 40810341 - 40810284
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 784  Q
    ||||||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  40810341 ctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggc 40810284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 783
Target Start/End: Original strand, 35903702 - 35903758
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 783  Q
    |||||||||||||  ||||||||||| ||||| |||| |||||||||||||| ||||    
T  35903702 ctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 784
Target Start/End: Original strand, 8922897 - 8922954
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 784  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  8922897 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 8922954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 784
Target Start/End: Original strand, 41325835 - 41325892
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 784  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  41325835 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 41325892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 728 - 783
Target Start/End: Original strand, 44516799 - 44516854
Alignment:
Q  728 tccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 783  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||    
T  44516799 tccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtgg 44516854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 776
Target Start/End: Complemental strand, 8814532 - 8814483
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtga 776  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  8814532 ctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 778
Target Start/End: Complemental strand, 17943075 - 17943018
Alignment:
Q  721 atttttctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgaca 778  Q
    ||||| ||||||||   ||| ||||||||||| ||||||||| |||||||||||||||    
T  17943075 attttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgaca 17943018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 784
Target Start/End: Original strand, 42578722 - 42578779
Alignment:
Q  727 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 784  Q
    ||||||||| |||| ||||||||||| ||||| ||||||| ||||| ||||| |||||    
T  42578722 ctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggc 42578779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 738 - 778
Target Start/End: Original strand, 34260140 - 34260180
Alignment:
Q  738 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 778  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34260140 tttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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