View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_low_12 (Length: 478)

Name: NF11599_low_12
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_low_12
NF11599_low_12
[»] chr2 (39 HSPs)
chr2 (246-459)||(11938716-11938930)
chr2 (289-424)||(36450891-36451027)
chr2 (255-420)||(36449776-36449943)
chr2 (255-420)||(7898689-7898856)
chr2 (46-157)||(11938515-11938627)
chr2 (276-424)||(18299367-18299517)
chr2 (257-421)||(18904364-18904530)
chr2 (303-421)||(23869519-23869638)
chr2 (290-420)||(38840464-38840596)
chr2 (332-426)||(18868916-18869011)
chr2 (289-415)||(22848194-22848322)
chr2 (291-415)||(13570529-13570655)
chr2 (290-423)||(7899853-7899988)
chr2 (290-396)||(11258782-11258889)
chr2 (289-415)||(13030295-13030420)
chr2 (289-423)||(18905958-18906093)
chr2 (290-423)||(38839237-38839372)
chr2 (255-415)||(18300660-18300820)
chr2 (255-398)||(24475245-24475390)
chr2 (279-415)||(28617926-28618062)
chr2 (344-415)||(1033214-1033284)
chr2 (289-420)||(18797244-18797378)
chr2 (290-415)||(41878095-41878224)
chr2 (342-419)||(13567971-13568049)
chr2 (342-423)||(16446149-16446231)
chr2 (279-421)||(41879173-41879316)
chr2 (256-415)||(11257625-11257786)
chr2 (294-426)||(22587929-22588062)
chr2 (342-415)||(802615-802688)
chr2 (290-426)||(26545492-26545630)
chr2 (46-83)||(18905188-18905225)
chr2 (362-415)||(21837299-21837351)
chr2 (265-381)||(27553711-27553827)
chr2 (337-398)||(32739644-32739705)
chr2 (279-398)||(22587522-22587640)
chr2 (336-412)||(24476862-24476937)
chr2 (337-415)||(1034488-1034567)
chr2 (107-138)||(18905139-18905170)
chr2 (290-415)||(26544152-26544278)
[»] chr5 (38 HSPs)
chr5 (290-423)||(28538671-28538806)
chr5 (290-427)||(36486459-36486598)
chr5 (290-419)||(28539791-28539921)
chr5 (290-415)||(36485303-36485430)
chr5 (289-415)||(19752915-19753042)
chr5 (291-422)||(25523065-25523198)
chr5 (265-415)||(22940568-22940720)
chr5 (255-420)||(16650790-16650958)
chr5 (282-422)||(20216726-20216868)
chr5 (289-420)||(18486872-18487005)
chr5 (289-405)||(19754100-19754217)
chr5 (255-419)||(24332912-24333078)
chr5 (255-416)||(42195136-42195298)
chr5 (289-378)||(25524068-25524158)
chr5 (276-426)||(5778793-5778945)
chr5 (290-420)||(40255643-40255775)
chr5 (282-415)||(1796057-1796192)
chr5 (282-415)||(20214199-20214333)
chr5 (327-415)||(25056389-25056479)
chr5 (303-422)||(5777897-5778016)
chr5 (327-398)||(7311611-7311683)
chr5 (293-395)||(18154518-18154619)
chr5 (289-415)||(18485141-18485276)
chr5 (338-420)||(5730439-5730523)
chr5 (317-424)||(1016862-1016970)
chr5 (255-420)||(25055410-25055578)
chr5 (290-420)||(33160258-33160389)
chr5 (290-410)||(1015492-1015614)
chr5 (342-396)||(2686425-2686479)
chr5 (298-415)||(21835044-21835162)
chr5 (336-398)||(33158119-33158181)
chr5 (342-420)||(25524151-25524231)
chr5 (256-366)||(16650045-16650157)
chr5 (290-387)||(1797268-1797366)
chr5 (345-398)||(34893686-34893739)
chr5 (343-415)||(2186774-2186846)
chr5 (259-299)||(2188889-2188929)
chr5 (343-415)||(5962597-5962668)
[»] chr1 (43 HSPs)
chr1 (290-428)||(45149941-45150081)
chr1 (256-423)||(24422795-24422965)
chr1 (289-420)||(43058784-43058916)
chr1 (289-420)||(50680330-50680462)
chr1 (290-419)||(24426046-24426177)
chr1 (290-415)||(39699738-39699864)
chr1 (256-415)||(52274971-52275133)
chr1 (276-424)||(41364823-41364972)
chr1 (256-420)||(14999283-14999445)
chr1 (342-421)||(23980490-23980570)
chr1 (255-422)||(35595127-35595298)
chr1 (256-420)||(52276099-52276266)
chr1 (290-415)||(39698566-39698692)
chr1 (265-423)||(11437144-11437305)
chr1 (279-415)||(45157170-45157306)
chr1 (276-415)||(51684369-51684510)
chr1 (289-415)||(36613874-36614002)
chr1 (289-415)||(35594220-35594346)
chr1 (289-419)||(37526848-37526979)
chr1 (255-419)||(39153052-39153218)
chr1 (293-424)||(51685739-51685872)
chr1 (276-423)||(52828027-52828176)
chr1 (290-405)||(14999926-15000042)
chr1 (290-420)||(7983048-7983179)
chr1 (342-420)||(7674526-7674603)
chr1 (265-415)||(11436045-11436198)
chr1 (289-424)||(43059976-43060113)
chr1 (317-395)||(7675457-7675536)
chr1 (290-384)||(44411937-44412032)
chr1 (290-415)||(45148584-45148710)
chr1 (288-420)||(35066971-35067105)
chr1 (290-419)||(43378684-43378814)
chr1 (279-422)||(39151927-39152071)
chr1 (293-415)||(36612856-36612979)
chr1 (290-415)||(52827350-52827477)
chr1 (311-415)||(33088609-33088715)
chr1 (337-395)||(44404466-44404524)
chr1 (303-415)||(41366115-41366228)
chr1 (263-323)||(2940362-2940422)
chr1 (350-415)||(39222505-39222572)
chr1 (290-381)||(46525772-46525862)
chr1 (276-426)||(30249447-30249599)
chr1 (419-459)||(33064871-33064911)
[»] chr8 (42 HSPs)
chr8 (290-415)||(11287779-11287906)
chr8 (290-426)||(24122875-24123012)
chr8 (290-415)||(12353332-12353457)
chr8 (279-420)||(5513980-5514122)
chr8 (290-423)||(18978015-18978149)
chr8 (290-415)||(18979091-18979218)
chr8 (276-420)||(11282006-11282152)
chr8 (290-423)||(18970906-18971040)
chr8 (289-414)||(45112875-45113000)
chr8 (277-417)||(29968296-29968436)
chr8 (289-415)||(10006347-10006475)
chr8 (289-415)||(22221334-22221462)
chr8 (289-415)||(22227676-22227804)
chr8 (289-420)||(10007733-10007866)
chr8 (342-421)||(5514294-5514373)
chr8 (255-415)||(22220391-22220554)
chr8 (289-413)||(1824048-1824174)
chr8 (289-413)||(1858493-1858619)
chr8 (290-415)||(8388467-8388592)
chr8 (265-415)||(30335642-30335795)
chr8 (265-415)||(30336446-30336599)
chr8 (290-395)||(24123869-24123975)
chr8 (290-424)||(12351915-12352051)
chr8 (327-398)||(24488688-24488759)
chr8 (302-423)||(42982640-42982763)
chr8 (290-415)||(43661268-43661395)
chr8 (279-419)||(40471107-40471248)
chr8 (265-415)||(11283155-11283307)
chr8 (280-423)||(30568882-30569025)
chr8 (342-415)||(32207349-32207421)
chr8 (419-459)||(17279180-17279220)
chr8 (420-459)||(17275638-17275677)
chr8 (361-415)||(24483146-24483201)
chr8 (246-405)||(1823566-1823728)
chr8 (246-405)||(1858011-1858173)
chr8 (276-420)||(8389646-8389792)
chr8 (372-420)||(11288914-11288963)
chr8 (327-415)||(24359812-24359900)
chr8 (363-415)||(36249555-36249608)
chr8 (363-422)||(11456634-11456694)
chr8 (280-359)||(34625161-34625241)
chr8 (370-413)||(45114568-45114612)
[»] chr3 (49 HSPs)
chr3 (290-420)||(7268798-7268929)
chr3 (289-415)||(54539758-54539886)
chr3 (290-415)||(54540761-54540888)
chr3 (290-423)||(7267639-7267773)
chr3 (256-415)||(8456481-8456642)
chr3 (282-425)||(29931219-29931364)
chr3 (282-425)||(29980373-29980518)
chr3 (291-395)||(55191967-55192072)
chr3 (289-424)||(12700169-12700304)
chr3 (280-423)||(5029644-5029788)
chr3 (265-422)||(7758398-7758558)
chr3 (290-420)||(22776783-22776915)
chr3 (290-415)||(29932670-29932796)
chr3 (290-415)||(29981824-29981950)
chr3 (276-420)||(47610537-47610683)
chr3 (282-386)||(55191544-55191647)
chr3 (279-420)||(19984847-19984989)
chr3 (318-414)||(24516464-24516562)
chr3 (276-421)||(51470412-51470558)
chr3 (290-426)||(54986978-54987114)
chr3 (255-429)||(51038725-51038902)
chr3 (276-415)||(51469975-51470116)
chr3 (327-421)||(534496-534592)
chr3 (290-428)||(49216237-49216377)
chr3 (350-421)||(11671373-11671444)
chr3 (288-426)||(53614811-53614950)
chr3 (337-415)||(12703519-12703597)
chr3 (291-424)||(34019117-34019250)
chr3 (290-415)||(51037539-51037665)
chr3 (276-415)||(46721177-46721318)
chr3 (362-422)||(47615592-47615653)
chr3 (265-415)||(46719944-46720096)
chr3 (290-424)||(47609691-47609827)
chr3 (289-415)||(47614188-47614316)
chr3 (290-415)||(52840575-52840702)
chr3 (327-415)||(535790-535880)
chr3 (290-395)||(4271464-4271570)
chr3 (342-419)||(52104480-52104554)
chr3 (290-395)||(6249633-6249738)
chr3 (290-413)||(23769862-23769986)
chr3 (290-415)||(40426749-40426877)
chr3 (290-381)||(10584012-10584102)
chr3 (255-420)||(19986006-19986175)
chr3 (368-411)||(22775783-22775826)
chr3 (337-415)||(53901407-53901484)
chr3 (352-420)||(5001198-5001267)
chr3 (289-424)||(8875900-8876037)
chr3 (290-424)||(23770378-23770514)
chr3 (368-420)||(28262191-28262243)
[»] chr4 (44 HSPs)
chr4 (290-424)||(19750546-19750681)
chr4 (290-424)||(19789125-19789260)
chr4 (276-420)||(49307985-49308129)
chr4 (290-427)||(1963187-1963326)
chr4 (291-419)||(8758809-8758939)
chr4 (290-413)||(31599794-31599919)
chr4 (290-425)||(37728536-37728672)
chr4 (290-415)||(31600956-31601083)
chr4 (293-421)||(26421597-26421725)
chr4 (265-421)||(1290143-1290302)
chr4 (289-420)||(1835072-1835205)
chr4 (255-423)||(49306770-49306939)
chr4 (290-420)||(52491578-52491710)
chr4 (255-415)||(1834122-1834286)
chr4 (276-420)||(5526083-5526228)
chr4 (265-428)||(13509304-13509469)
chr4 (290-421)||(8757672-8757804)
chr4 (289-420)||(17382991-17383123)
chr4 (289-420)||(17388181-17388313)
chr4 (317-419)||(21539069-21539173)
chr4 (276-421)||(25685779-25685926)
chr4 (276-415)||(10471345-10471486)
chr4 (279-415)||(35934347-35934482)
chr4 (288-423)||(55603501-55603636)
chr4 (327-423)||(8155733-8155830)
chr4 (336-416)||(12129625-12129706)
chr4 (276-415)||(25684937-25685078)
chr4 (276-415)||(5525363-5525503)
chr4 (255-421)||(33296221-33296389)
chr4 (290-416)||(35935504-35935632)
chr4 (303-421)||(48780245-48780365)
chr4 (255-415)||(1964376-1964539)
chr4 (280-415)||(14868893-14869028)
chr4 (280-415)||(14876906-14877041)
chr4 (289-423)||(21177992-21178127)
chr4 (276-415)||(10470549-10470690)
chr4 (276-420)||(13386012-13386160)
chr4 (342-397)||(33310113-33310168)
chr4 (334-419)||(54110643-54110727)
chr4 (276-415)||(13386489-13386631)
chr4 (255-422)||(10448196-10448365)
chr4 (290-415)||(50909643-50909771)
chr4 (256-335)||(2412855-2412935)
chr4 (304-348)||(33997839-33997883)
[»] scaffold0632 (1 HSPs)
scaffold0632 (293-424)||(3282-3414)
[»] chr7 (34 HSPs)
chr7 (289-415)||(18371427-18371555)
chr7 (256-415)||(31659625-31659788)
chr7 (290-420)||(42886257-42886389)
chr7 (276-426)||(127329-127479)
chr7 (289-405)||(18372427-18372544)
chr7 (255-413)||(14999091-14999249)
chr7 (276-421)||(3227551-3227698)
chr7 (289-387)||(22629518-22629617)
chr7 (289-421)||(22630422-22630556)
chr7 (276-420)||(31949759-31949905)
chr7 (279-421)||(7501812-7501956)
chr7 (276-422)||(31949318-31949466)
chr7 (289-415)||(7500458-7500585)
chr7 (291-424)||(11662523-11662658)
chr7 (253-395)||(43899470-43899613)
chr7 (292-420)||(21505414-21505542)
chr7 (276-415)||(3227111-3227251)
chr7 (337-427)||(17782572-17782663)
chr7 (336-398)||(47369802-47369864)
chr7 (276-419)||(128558-128703)
chr7 (282-420)||(11658377-11658517)
chr7 (352-421)||(34174017-34174086)
chr7 (246-397)||(46482619-46482772)
chr7 (276-415)||(47525324-47525465)
chr7 (290-415)||(769416-769543)
chr7 (290-415)||(17781664-17781791)
chr7 (350-415)||(20163588-20163654)
chr7 (293-419)||(43900463-43900589)
chr7 (342-415)||(48934927-48935001)
chr7 (352-411)||(47524532-47524592)
chr7 (371-421)||(46483561-46483611)
chr7 (342-426)||(34352810-34352895)
chr7 (278-318)||(8521105-8521145)
chr7 (107-143)||(43899724-43899760)
[»] scaffold0019 (2 HSPs)
scaffold0019 (255-415)||(61394-61557)
scaffold0019 (255-415)||(60093-60256)
[»] scaffold1303 (1 HSPs)
scaffold1303 (276-420)||(1437-1583)
[»] scaffold0003 (1 HSPs)
scaffold0003 (257-420)||(49370-49536)
[»] chr6 (25 HSPs)
chr6 (257-420)||(27437826-27437992)
chr6 (259-413)||(6840199-6840353)
chr6 (290-416)||(26575025-26575151)
chr6 (291-422)||(16704469-16704602)
chr6 (290-423)||(1829574-1829709)
chr6 (303-422)||(8821869-8821990)
chr6 (280-420)||(27322029-27322170)
chr6 (276-421)||(8659262-8659409)
chr6 (279-405)||(10785874-10786000)
chr6 (290-424)||(26574613-26574748)
chr6 (289-420)||(7316264-7316397)
chr6 (276-415)||(8660161-8660301)
chr6 (289-415)||(7314883-7315010)
chr6 (290-420)||(10784590-10784724)
chr6 (276-420)||(34834536-34834682)
chr6 (276-415)||(3721615-3721756)
chr6 (290-420)||(14823546-14823679)
chr6 (280-420)||(27318313-27318456)
chr6 (293-419)||(29473076-29473204)
chr6 (290-423)||(14822355-14822490)
chr6 (338-423)||(3722527-3722613)
chr6 (334-415)||(16703573-16703653)
chr6 (343-423)||(6842308-6842389)
chr6 (342-415)||(12382735-12382809)
chr6 (290-348)||(22418867-22418924)
[»] scaffold0302 (2 HSPs)
scaffold0302 (290-421)||(17467-17600)
scaffold0302 (290-415)||(18747-18874)
[»] scaffold2034 (2 HSPs)
scaffold2034 (290-415)||(236-363)
scaffold2034 (290-395)||(949-1055)
[»] scaffold0093 (2 HSPs)
scaffold0093 (282-415)||(2428-2562)
scaffold0093 (282-415)||(7051-7185)
[»] scaffold0294 (1 HSPs)
scaffold0294 (290-421)||(5409-5542)
[»] scaffold0059 (2 HSPs)
scaffold0059 (342-415)||(4754-4827)
scaffold0059 (289-398)||(3696-3806)
[»] scaffold0320 (1 HSPs)
scaffold0320 (289-422)||(19484-19619)
[»] scaffold0045 (1 HSPs)
scaffold0045 (343-415)||(49109-49182)
[»] scaffold0186 (2 HSPs)
scaffold0186 (289-426)||(23073-23210)
scaffold0186 (359-427)||(23931-24000)
[»] scaffold0112 (1 HSPs)
scaffold0112 (290-415)||(37151-37277)
[»] scaffold0586 (2 HSPs)
scaffold0586 (327-422)||(6339-6436)
scaffold0586 (327-420)||(9035-9128)
[»] scaffold0049 (2 HSPs)
scaffold0049 (298-415)||(7394-7513)
scaffold0049 (280-341)||(7880-7941)
[»] scaffold0369 (1 HSPs)
scaffold0369 (282-415)||(13196-13329)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 246 - 459
Target Start/End: Original strand, 11938716 - 11938930
Alignment:
Q  246 aattagtttattacacgcatggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctta-gggggcaa 344  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| || |||||||||| ||||||||    
T  11938716 aattagtttattacacgcgtcgcatgccactcagtattgactgagtcaaaattggcaaaaatgatcaaaattgcaaaagagctaattcttaggggggcaa 11938815  T
Q  345 aattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaaattttctctgagattgatggt 443  Q
    ||||||| |||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||     
T  11938816 aattata-tttttgtacttaggagaccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctaaaattttctctgagattgacgga 11938914  T
Q  444 ataggataggggttct 459  Q
     |||||||||||||||    
T  11938915 ctaggataggggttct 11938930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 289 - 424
Target Start/End: Original strand, 36450891 - 36451027
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggca-aaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||  ||||| |||||| |||| ||||| | ||||||||||||||||||    
T  36450891 agtcaaaattggccaaaaggatcaaaattgcaaaggagctaattcttggggggccgaaattgtagtttctgtacttaggggaccaaaattgcaagttttt 36450990  T
Q  388 taaagttagggtggaaaagtgcactttaacctaaaat 424  Q
     ||||||| || |||||||||||||||||||||||||    
T  36450991 gaaagttaagggggaaaagtgcactttaacctaaaat 36451027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 255 - 420
Target Start/End: Complemental strand, 36449943 - 36449776
Alignment:
Q  255 attacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||| |||||||||||||  || ||||||| | ||||||||||   ||||||||||||||||||||||  ||||||||| ||||| ||||||| |||    
T  36449943 attacacacatggcatgccacgtaggcattgaccg-gtcaaaattggtcaaaaggatcaaaattgcaaagggcctaattcttgggggggcaaaattgtag 36449845  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    |||||||| ||||| |||||||||||||||||||| |||||| |||| |||||||||||||||| ||||    
T  36449844 tttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagccta 36449776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 420
Target Start/End: Complemental strand, 7898856 - 7898689
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | ||||||||||| | ||||||||||| |||||||||||  |||||||| |||||||||| ||  |||| ||||||||||| |||||| |||    
T  7898856 attacacacgtggcatgccacgtaagcattgactg-gtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggccaaaattgtag 7898758  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||| | || ||||||||| |||||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  7898757 tttctatacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcactttaaccta 7898689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 11938515 - 11938627
Alignment:
Q  46 taaggatgatcttgtttctacttcaacaaaaggatgatagtgatgatgcag-nnnnnnnnnntcaattgaaatttttgtgctttgttgttatgtgatgtt 144  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||           ||||||| |||||||||| |||||||||||||||||||    
T  11938515 taaggatgatcttgtttctacttcaacaaaaggatgatggtgatgatgcagaaaaaataaaatcaattgtaatttttgtgttttgttgttatgtgatgtt 11938614  T
Q  145 gaatctaatgaag 157  Q
    |||||||||||||    
T  11938615 gaatctaatgaag 11938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 424
Target Start/End: Complemental strand, 18299517 - 18299367
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||||||||||  |||||||||||| ||||||||||||  |||||| |  |||| || |||||||| |||||| |||||||| || ||||| |||||||    
T  18299517 tcagcattgacttggtcaaaattgaccaaaaggatcaaagatgcaaaagggctaaatcatagggggccaaaattgtagtttttatacttaggtggccaaa 18299418  T
Q  375 attgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaaat 424  Q
    |||| |||||||| ||||||| |||||||||||||||||||| || |||||    
T  18299417 attgaaagtttttgaaagttacgggtggaaaagtgcactttagccaaaaat 18299367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 421
Target Start/End: Complemental strand, 18904530 - 18904364
Alignment:
Q  257 tacacgcatggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggg-ggcaaaattatagttt 355  Q
    ||||||| |||||||||||||||| |||||| ||| ||||||| | ||||||| ||||  || |||||  |||||||||||||   ||||||| ||||||    
T  18904530 tacacgcgtggcatgccactcagctttgactaagttaaaattggccaaaaggaccaaagatgtaaaggggctaattcttagggaaccaaaattgtagttt 18904431  T
Q  356 ttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaa 421  Q
    ||||| ||| | ||||||||||||| |||||| |||||| |||| |||||||||||||||| |||||    
T  18904430 ttgtacttaaggggccaaaattgcacgtttttgaaagttaaggggggaaaagtgcactttagcctaa 18904364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 303 - 421
Target Start/End: Original strand, 23869519 - 23869638
Alignment:
Q  303 aaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtg 400  Q
    ||||||||||||  ||||||||  |||| |||||||| || |||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  23869519 aaaaggatcaaagatgcaaaggggctaaatcttagggagctaaaattgtagtttttgtatttagggggccaaaattgcaag-tttttaaagttaagggtg 23869617  T
Q  401 gaaaagtgcactttaacctaa 421  Q
    ||||||||||||||| |||||    
T  23869618 gaaaagtgcactttagcctaa 23869638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 38840464 - 38840596
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||  |||||||| |||||||||| ||  |||| ||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||||||     
T  38840464 gtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggctaaaattgtagtttttgtacttagggggctaaaattgcaagtttttg 38840563  T
Q  389 aaagtt-agggtggaaaagtgcactttaaccta 420  Q
    |||||| |||| |||||||||||||||| ||||    
T  38840564 aaagttaaggggggaaaagtgcactttagccta 38840596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 426
Target Start/End: Complemental strand, 18869011 - 18868916
Alignment:
Q  332 tcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaaattt 426  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||    
T  18869011 tcttagggatcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttaggggtggaaaagtacactttagcctaatattt 18868916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 22848322 - 22848194
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||  ||||||| ||||  ||||||||  |||| |||||||| || |||||| ||||||||||||||||| | ||||||||||||||||||    
T  22848322 agtcaaaattgatcaaaaggaccaaagctgcaaaggggctaaatcttagggagccaaaattgtagtttttgtatttaggggaccaaaattgcaagttttt 22848223  T
Q  388 taaagttagggtgg-aaaagtgcacttta 415  Q
     |||||||||| || ||||||||||||||    
T  22848222 gaaagttaggggggtaaaagtgcacttta 22848194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 13570529 - 13570655
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    ||||||||| |||||||||||||| ||| ||||| |||||||||| ||||  ||||||||||||||||||| ||| | | | |||||||||||||||| |    
T  13570529 tcaaaattggcaaaaaggatcaaagttgtaaagggactaattcttgggggaccaaaattatagtttttgtacttaagggactaaaattgcaagtttttga 13570628  T
Q  390 aagtta-gggtggaaaagtgcacttta 415  Q
    |||||| |||| ||||| |||||||||    
T  13570629 aagttatgggtagaaaaatgcacttta 13570655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 423
Target Start/End: Original strand, 7899853 - 7899988
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||| ||| ||| || ||| ||  |||| ||||||||||| |||||| |||||| |||| ||||| | ||||||||||||||||||     
T  7899853 gtcaaaattgaccaaaaagattaaagttacaatggggctaaatcttagggggctaaaattgtagtttctgtacttaggggaccaaaattgcaagtttttg 7899952  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaaaa 423  Q
    |||||| |||| |||||||||||||||| |||||||    
T  7899953 aaagttaaggggggaaaagtgcactttagcctaaaa 7899988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 11258782 - 11258889
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||||||||||  ||||| ||  |||| ||||||||| | |||||| ||||||||||| ||||| ||||||||||||||||||||     
T  11258782 gtcaaaattgaccaaaaggatcaaatctgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttg 11258881  T
Q  389 aaagttag 396  Q
    ||||||||    
T  11258882 aaagttag 11258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 13030420 - 13030295
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| |||| || ||||  |||||| || |||| ||||||||||| |||||| || |||||||| ||||| |||||||||| |||||||||    
T  13030420 agtcaaaattgaccaaaatgaccaaagatgcaaaagagctaaatcttagggggcaaaaattgtaatttttgtacttagg-ggccaaaattacaagttttt 13030322  T
Q  388 taaagttagggtggaaaagtgcacttta 415  Q
     |||||||||| ||||||||||||||||    
T  13030321 gaaagttaggg-ggaaaagtgcacttta 13030295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 423
Target Start/End: Original strand, 18905958 - 18906093
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||  |||| || ||||  |||||| || |||| |||||||||  |||||| ||||||||||| ||||| ||| ||||||||||||||||     
T  18905958 agtcaaaattgatcaaaaagaccaaagatgcaaatgagctaaatcttaggggctaaaattgtagtttttgtacttagggggctaaaattgcaagtttttg 18906057  T
Q  389 aaagttag-ggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||||  | |||||||||||||||| |||||||    
T  18906058 aaagttagaaggggaaaagtgcactttagcctaaaa 18906093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 38839372 - 38839237
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||| ||| |||||||||| ||  |||| ||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||||||     
T  38839372 gtcaaaattgaccaaaatgattaaaattgcaatggggctaaatcttagggggccaaaattgtagtttttgtagttagggggctaaaattgcaagtttttg 38839273  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaaaa 423  Q
    ||| || |||| | |||| ||||||||| |||||||    
T  38839272 aaaattaagggggaaaaaatgcactttagcctaaaa 38839237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 415
Target Start/End: Original strand, 18300660 - 18300820
Alignment:
Q  255 attacacgcatggcatg-ccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagt 353  Q
    ||||||||  ||||||| ||| ||||||||||||   ||||||||| | ||||||| ||||  ||||||||  |||| |  |||||| ||||||| ||||    
T  18300660 attacacgtgtggcatgtccaatcagcattgacttgatcaaaattgtccaaaaggaccaaagatgcaaaggggctaaattataggggtcaaaattgtagt 18300759  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||| ||||| || ||||||||||||||| | |||||||||| ||||||||||| ||||    
T  18300760 ttttgtacttagggggtcaaaattgcaagtttatgaaagttaggg-ggaaaagtgcaattta 18300820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 398
Target Start/End: Complemental strand, 24475390 - 24475245
Alignment:
Q  255 attacacgcatggcatg-ccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||||| ||| ||| ||| ||||||||||||  |||||||||||| ||||||| ||||  |||||| || |||| |  ||||||| ||||||| |||    
T  24475390 attacacgcgtggaatgtccaatcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgagctaaattatagggggccaaaattgtag 24475291  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    ||||| || ||||| ||| |||||| ||||||||| ||||||||||    
T  24475290 tttttatacttagggggcaaaaattacaagtttttgaaagttaggg 24475245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 28618062 - 28617926
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattg 378  Q
    ||||||| | ||||||||| ||| ||||  | ||||  ||||||||  |||| |||||||||||||||||  |||||||||| || || |||||||||||    
T  28618062 gcattgaattagtcaaaatagaccaaaataaccaaagatgcaaaggggctaaatcttagggggcaaaattgaagtttttgtacttggggggccaaaattg 28617963  T
Q  379 caagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||| |||| |||||||||| | |||| || ||||||    
T  28617962 caagattttgaaagttagggagaaaaaatgtacttta 28617926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 415
Target Start/End: Complemental strand, 1033284 - 1033214
Alignment:
Q  344 aaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||||||| |||| ||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||    
T  1033284 aaattataattttggtatttagg-ggccaaaattgcaagtttttaaaagttaggggggaaaagtacacttta 1033214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 18797378 - 18797244
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| | ||||||| ||||  ||||||||  |||| | |||||||| ||||||| |||||||  || ||| | || |||||||||||||||||    
T  18797378 agtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttagggggtcaaaattgtagttttaatacttaaggggtcaaaattgcaagttttt 18797279  T
Q  388 taaagtta--gggtggaaaagtgcactttaaccta 420  Q
     |||||||  |||||||||||||||||||| ||||    
T  18797278 gaaagttagggggtggaaaagtgcactttagccta 18797244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 41878224 - 41878095
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgca---agttt 385  Q
    |||||||||||| |||| ||| |||||||||| ||  |||| ||||| ||||| |||||| |||||| |||| ||||| |||||||||||||   |||||    
T  41878224 gtcaaaattgaccaaaaagattaaaattgcaatggggctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattgcaaatagttt 41878125  T
Q  386 tttaaagttagggtggaaaagtgcacttta 415  Q
    || ||||||| || || |||||||||||||    
T  41878124 ttgaaagttaaggggggaaagtgcacttta 41878095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 13568049 - 13567971
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaacct 419  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||  | |||||||| |||||||||||    
T  13568049 caaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaacttagaaggggaaaagtacactttaacct 13567971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 16446231 - 16446149
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||| ||||||||||||||| ||||  |||||||||||||||| |||||| ||||| ||||| ||||||||| |||||||    
T  16446231 caaaattgtagtttttgtatttatgaggttaaaattgcaagtttttgaaagttaagggtagaaaaatgcactttagcctaaaa 16446149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 41879173 - 41879316
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||| |||||||||||  |||| ||| |||||||||| ||  |||| | ||||||||  |||||| |||||| |||| ||||| ||||||||||    
T  41879173 gcattgactg-gtcaaaattgatcaaaatgattaaaattgcaatggtgctaaattttagggggttaaaattgtagtttatgtacttagggggccaaaatt 41879271  T
Q  378 gcaagttttttaaagtt-agggtggaaaagtgcactttaacctaa 421  Q
    |||||||||| ||| || |||| | ||||||| |||||| |||||    
T  41879272 gcaagtttttgaaaattaagggggaaaaagtgtactttagcctaa 41879316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 415
Target Start/End: Complemental strand, 11257786 - 11257625
Alignment:
Q  256 ttacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagt 353  Q
    |||||| | ||||||||||| ||| | ||||||  |||||||||||  |||||||||||| |||||| ||  |||| ||||||| ||| |||||| ||||    
T  11257786 ttacacacgtggcatgccacgcaggcgttgactatgtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggaggccaaaattgtagt 11257687  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    |||| || ||||| |   |||||||||||||||| |||||||| || | ||||||||||||||    
T  11257686 ttttatacttagg-gtttaaaattgcaagtttttgaaagttagaggagtaaaagtgcacttta 11257625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 22587929 - 22588062
Alignment:
Q  294 aaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaag 392  Q
    |||||| | ||||||| ||||  ||||||||  |||| ||||| ||||| |||||| |||||||||||  |||| |||||||||||||||||||| ||||    
T  22587929 aaattggccaaaaggaccaaagatgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacatagg-ggccaaaattgcaagtttttgaaag 22588027  T
Q  393 tta-gggtggaaaagtgcactttaacctaaaattt 426  Q
    ||| | | |||||| ||||||||| ||| ||||||    
T  22588028 ttatgaggggaaaaatgcactttagccttaaattt 22588062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 802615 - 802688
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||| |||||||||||   ||| |||||||||||||||||||| ||| |||||| |||||||| |||||||    
T  802615 caaaattgtagtttttgtacacagggggccaaaattgcaagtttttgaaacttaggggggaaaagtacacttta 802688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 426
Target Start/End: Original strand, 26545492 - 26545630
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||  |||| || ||||  ||||||||  |||| |||||| ||| |||||||||| |||||||||||| | || ||||||||||| |||||     
T  26545492 gtcaaaattgatcaaaatgaccaaagatgcaaaggggctaaatcttagagggtcaaaattataatttttgtatttaaggggtcaaaattgcaaatttttg 26545591  T
Q  389 aaagttagggtgg-aaaagtgcactttaacctaaaattt 426  Q
    ||||| | |  || |||||||||||||| | ||||||||    
T  26545592 aaagtcatgaaggaaaaagtgcactttagcttaaaattt 26545630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 18905225 - 18905188
Alignment:
Q  46 taaggatgatcttgtttctacttcaacaaaaggatgat 83  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18905225 taaggatgatcttgtttctacttcaacaaaatgatgat 18905188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 21837299 - 21837351
Alignment:
Q  362 ttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  21837299 ttagggggccaaaattgcaagtttttgaaagttaggg-gaaaaagtgcacttta 21837351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 27553711 - 27553827
Alignment:
Q  265 tggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtattt 363  Q
    |||||||||||| || | ||||||  |||||||||||| |||||| || | ||||||||||  |||| ||||||||||||||||| |  ||||| |  ||    
T  27553711 tggcatgccacttaggcgttgactcggtcaaaattgaccaaaagg-tcgatattgcaaaggggctaaatcttagggggcaaaattttcattttttttatt 27553809  T
Q  364 aggaggccaaaattgcaa 381  Q
    ||||||||||||| ||||    
T  27553810 aggaggccaaaatcgcaa 27553827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 32739705 - 32739644
Alignment:
Q  337 gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    |||| ||||||| |||||||||||  || | |||||||||||||||||||| ||||||||||    
T  32739705 ggggccaaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagttaggg 32739644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 398
Target Start/End: Complemental strand, 22587640 - 22587522
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||| |||||||||| | ||||||| ||||  |||||||   |||| |||||||||| ||||||| |||||||||||  |||| | ||||||||    
T  22587640 gcattgactg-gtcaaaattggccaaaaggaccaaagatgcaaagaggctaaatcttagggggccaaaattgtagtttttgta-ataggggaccaaaatt 22587543  T
Q  378 gcaagttttttaaagttaggg 398  Q
    | || ||||| ||||||||||    
T  22587542 ggaactttttgaaagttaggg 22587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 24476862 - 24476937
Alignment:
Q  336 agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcact 412  Q
    ||||| ||||||| ||||||||||| ||||| | |||||||| ||||||||| |||||| ||| | |||||||||||    
T  24476862 aggggtcaaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaagtt-gggggaaaaagtgcact 24476937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 1034488 - 1034567
Alignment:
Q  337 gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    |||||| ||||| | ||||| |||  |||| ||||||||||||| |||||| |||||| |||| ||||||||||||||||    
T  1034488 gggggctaaattgtggttttggtacgtagggggccaaaattgcatgtttttgaaagttaaggggggaaaagtgcacttta 1034567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 18905170 - 18905139
Alignment:
Q  107 tcaattgaaatttttgtgctttgttgttatgt 138  Q
    ||||||||||||||||||||||||||||||||    
T  18905170 tcaattgaaatttttgtgctttgttgttatgt 18905139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 26544278 - 26544152
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||  ||||||| ||||  ||||||||  |||| ||||||| ||| |||| | ||||||||||| ||||||  ||||||||| || |||||     
T  26544278 gtcaaaattgatcaaaaggaccaaatatgcaaaggtgctaaatcttaggaggctaaaactgtagtttttgtacttagga-accaaaattgtaaattttta 26544180  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||| ||| |||| |||||||||||||||    
T  26544179 aaaattaggggtagaaaagtgcacttta 26544152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 28538806 - 28538671
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||||||||||| |||||||||  |||| ||||||||||| |||||| ||||||||||| ||| | || |||||||||||||||||     
T  28538806 gtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggctaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 28538707  T
Q  389 aaagtta-gggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||| |||||||||||||||||||| |||||||    
T  28538706 aaagttacgggtggaaaagtgcactttagcctaaaa 28538671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 36486459 - 36486598
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||| | |||||| ||||||||||| ||||| || |||||||||||||||||     
T  36486459 gtcaaaattgacaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 36486558  T
Q  389 aaagttagggtgg-aaaagtgcactttaacctaaaatttt 427  Q
    |||||||||| || |||||||||||| | ||| |||||||    
T  36486559 aaagttaggggggaaaaagtgcacttcagccttaaatttt 36486598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 290 - 419
Target Start/End: Original strand, 28539791 - 28539921
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| |||||||||||||| ||||||||| ||||| ||||||||| | |||||| ||||||||||| ||||  || |||||||||||||||||     
T  28539791 gtcaaaattggcaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagagggtcaaaattgcaagttttta 28539890  T
Q  389 aaagttagggtggaaaagtgcactttaacct 419  Q
    |||||||||| |||||| |||||||||||||    
T  28539891 aaagttaggggggaaaaatgcactttaacct 28539921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 36485430 - 36485303
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||| ||||||| |||||||||   ||| ||||||||||| |||||||||||||||||| ||| |||| |||||||| |||||||||    
T  36485430 gtcaaaattgacaaaaatgatcaaagttgcaaaggggttaaatcttagggggccaaaattatagtttttgtacttaagaggtcaaaattgtaagtttttt 36485331  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| |||||||||| |||||||||    
T  36485330 aaagttaggggtggaaaaatgcacttta 36485303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 19753042 - 19752915
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||| ||  |||| || |||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  19753042 agtcaaaattgaccaaaaggaccaaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagttttt 19752943  T
Q  388 taaagttagggtggaaaagtgcacttta 415  Q
     |||||||||| ||||||||||||||||    
T  19752942 gaaagttaggggggaaaagtgcacttta 19752915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 422
Target Start/End: Complemental strand, 25523198 - 25523065
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    ||||||||||  ||||||||||||  ||||||||  |||| |||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||||| |    
T  25523198 tcaaaattgatcaaaaggatcaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacttagggggctaaaattgcaagtttttga 25523099  T
Q  390 aagtt-agggtggaaaagtgcactttaacctaaa 422  Q
    ||||| |||| |||||||||||||||| ||||||    
T  25523098 aagttaaggggggaaaagtgcactttagcctaaa 25523065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 415
Target Start/End: Original strand, 22940568 - 22940720
Alignment:
Q  265 tggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtattt 363  Q
    |||||||||||| || | ||||||  |||||||||||| |||||||| |||  || |||||  |||| | ||||||| ||||||| || |||||||| ||    
T  22940568 tggcatgccacttaggcgttgacttggtcaaaattgaccaaaaggataaaagatgaaaaggggctaaattttaggggtcaaaattgtaatttttgtactt 22940667  T
Q  364 aggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||| |||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  22940668 agggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 22940720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 420
Target Start/End: Original strand, 16650790 - 16650958
Alignment:
Q  255 attacacgcatggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | ||||||||||| || || ||||||   ||||||||||| ||||||| ||||  |||||| |  ||||  |||||||||| |||||| |||    
T  16650790 attacacacgtggcatgccacacatgcgttgacttgatcaaaattgaccaaaaggaccaaagatgcaaatgggctaaaccttagggggctaaaattgtag 16650889  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||||| || ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  16650890 tttttatacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcactttagccta 16650958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 422
Target Start/End: Original strand, 20216726 - 20216868
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||| ||||||||||||||  ||||||  |  |||||||| |  ||||||||| |||||| |||||| |||||||||||| ||||  || |||||||||    
T  20216726 ttgaccgagtcaaaattgacgtaaaggactactattgcaaatgggctaattcttggggggccaaaattgtagtttttgtatatagggagctaaaattgca 20216825  T
Q  381 agttttttaaagtt-agggtggaaaagtgcactttaacctaaa 422  Q
    ||||||| ||| || |||| |||||||||||||||||||||||    
T  20216826 agtttttgaaaattaaggggggaaaagtgcactttaacctaaa 20216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 18486872 - 18487005
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||||  |||| ||||||||||| |||||| | |||| | || ||||| ||||||||||||||||||||    
T  18486872 agtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtggtttctatacttagggggccaaaattgcaagttttt 18486971  T
Q  388 taaagtt-agggtggaaaagtgcactttaaccta 420  Q
     |||||| |||| || ||||||||||||| ||||    
T  18486972 gaaagttaagggggggaaagtgcactttagccta 18487005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 405
Target Start/End: Original strand, 19754100 - 19754217
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||||   ||||||| ||||  ||||| ||  |||| || |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  19754100 agtcaaaattgttcaaaaggaccaaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtatttagggggccaaaattgcaagttttt 19754199  T
Q  388 taaagttagggtggaaaa 405  Q
     |||||||||| ||||||    
T  19754200 gaaagttaggggggaaaa 19754217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 419
Target Start/End: Complemental strand, 24333078 - 24332912
Alignment:
Q  255 attacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||| | |||||||||||  || ||||||||| |||||||||||| ||||||| ||||  ||||||||   ||| |||||| ||| ||||||| |||    
T  24333078 attacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtag 24332980  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacct 419  Q
    ||||||||  || | |||||||||||||||||||| ||| || |||| | ||||||||||||||||||    
T  24332979 tttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcactttaacct 24332912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 416
Target Start/End: Complemental strand, 42195298 - 42195136
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | ||||||||||  ||||| ||||||  |||||||||||| ||||||| ||||  ||||||||  |||| ||||||||| | |||||| |||    
T  42195298 attacacacgtggcatgccaaatcagcgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtag 42195199  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaa 416  Q
     |||||||  |||| ||||||||| |||| ||||| ||||||| || |||||||||||||||||    
T  42195198 attttgtacatagggggccaaaatcgcaacttttt-aaagttaagggggaaaagtgcactttaa 42195136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 25524068 - 25524158
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattg 378  Q
    ||||||||||||| |||||||  |||  ||||||||  |||| |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  25524068 agtcaaaattgaccaaaaggactaaagatgcaaaggggctaaatcttagggggtcaaaattatagtttttgtacttaggaggccaaaattg 25524158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 5778793 - 5778945
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| ||| |||    
T  5778793 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggcaaaa 5778892  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaaaattt 426  Q
    ||||||||||||| |||||||| || |||||||||||||||| |||| |||||    
T  5778893 attgcaagtttttgaaagttagagggggaaaagtgcactttagcctacaattt 5778945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 40255643 - 40255775
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||  |||| ||| |||||||||| ||   ||| ||||||||||| |||||| |||||| |||||||||| || |||||||||||||||||     
T  40255643 gtcaaaattgatcaaaaagattaaaattgcaatggggttaaatcttagggggccaaaattgtagtttctgtatttagggggtcaaaattgcaagttttta 40255742  T
Q  389 aaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||| || || | |||||||||||||||| ||||    
T  40255743 aaaattaagaggggaaaagtgcactttagccta 40255775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 1796192 - 1796057
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    |||||||||||||||||||   ||||||  |  |||||||| |   |||||||| ||||  ||||||| ||||||||||| ||||| ||||||| |||||    
T  1796192 ttgactgagtcaaaattgaactaaaggactactattgcaaatgggttaattcttgggggatcaaaattgtagtttttgtacttaggtggccaaagttgca 1796093  T
Q  381 agttttttaaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||||||| |||||||||| |||||||||    
T  1796092 agtttttgaaagttaggggtggaaaaatgcacttta 1796057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 20214333 - 20214199
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||| ||||||||||||||| ||||||  |  |||||||| |   |||||||| ||||| ||||||| |||||||||||  |||   || |||||||||    
T  20214333 ttgaccgagtcaaaattgacataaaggactactattgcaaatgggataattcttgaggggccaaaattgtagtttttgtacatagagtgctaaaattgca 20214234  T
Q  381 agttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||| ||||||| || ||||||||||||||||    
T  20214233 agtttttgaaagttaagggggaaaagtgcacttta 20214199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 25056389 - 25056479
Alignment:
Q  327 ctaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagg-gtggaaaagtgcacttta 415  Q
    |||| |||||||||| ||||||| |||||||  || ||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  25056389 ctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagtgcacttta 25056479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 5778016 - 5777897
Alignment:
Q  303 aaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtgg 401  Q
    ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| || ||||||||||||||||| |||||||||| ||    
T  5778016 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaagttaggg-gg 5777918  T
Q  402 aaaagtgcactttaacctaaa 422  Q
     ||||||||||||| ||||||    
T  5777917 gaaagtgcactttagcctaaa 5777897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 7311683 - 7311611
Alignment:
Q  327 ctaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    |||| ||||||||||| |||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||||    
T  7311683 ctaaatcttagggggctaaaattgtagtttttgtacttgggaggccaatattgcaagtttttgaaagttaggg 7311611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 18154619 - 18154518
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaag 392  Q
    ||||||||  |||| ||||||| |||||| ||| |||| | |||| |||||||||| ||||||||||| ||||| || |||||||| |||||||| ||||    
T  18154619 aaaattgagcaaaatgatcaaatttgcaatggagctaaattttagagggcaaaattgtagtttttgtacttagg-ggtcaaaattgtaagtttttgaaag 18154521  T
Q  393 tta 395  Q
    |||    
T  18154520 tta 18154518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 18485276 - 18485141
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc--------aaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    |||||||||| || ||||||||||||  ||||||||  |||| |||||||||||        |||||| | |||||  || ||||| |||||||||||||    
T  18485276 agtcaaaattaaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaaacccaaaattgttgttttgatacttagggggccaaaattgca 18485177  T
Q  381 agttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    |||||||||||||||| || | ||||||||||||||    
T  18485176 agttttttaaagttagaggggaaaaagtgcacttta 18485141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 5730523 - 5730439
Alignment:
Q  338 ggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta--gggtggaaaagtgcactttaaccta 420  Q
    ||||| ||||| | ||||| ||| |||||| ||||||||||||||||||| |||||||  ||| |||||||||||||||| ||||    
T  5730523 ggggctaaattgtggttttggtacttaggaagccaaaattgcaagtttttgaaagttaagggggggaaaagtgcactttagccta 5730439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 1016862 - 1016970
Alignment:
Q  317 tgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtg-gaaaagtgcacttta 415  Q
    ||||||||| |||||||||||| | ||||||| |||||||||||  ||| || |||||||| ||| ||||| ||| |||||| |  |||| | |||||||    
T  1016862 tgcaaaggagctaattcttaggagtcaaaattgtagtttttgtacatagaagaccaaaattacaattttttaaaaattagggggaaaaaaatacacttta 1016961  T
Q  416 acctaaaat 424  Q
    |||||||||    
T  1016962 acctaaaat 1016970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 420
Target Start/End: Complemental strand, 25055578 - 25055410
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||| | ||||||||||  ||||||||||||   ||||||||||  ||||||| ||||  |||||| |  |||| |||||||||| ||||||| |||    
T  25055578 attacacacgtggcatgccaaatcagcattgacttgctcaaaattgatcaaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtag 25055479  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaaccta 420  Q
    ||||| ||  |||| |  ||||||||||||   ||||||||||| || |||||||||||||||| ||||    
T  25055478 tttttatacataggggatcaaaattgcaagaagtttaaagttagagggggaaaagtgcactttagccta 25055410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 33160258 - 33160389
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||||||| ||| |||||| ||  |||| ||||| |||| ||||||| |||||| | || ||||| ||| ||||||||||||||||     
T  33160258 gtcaaaattggctaaaaggattaaagttgcaatggg-ctaaatcttaaggggtcaaaattgtagtttctatacttagggggctaaaattgcaagtttttg 33160356  T
Q  389 aaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||| || |||| |||||||||||||||| ||||    
T  33160357 aaaattaaggggggaaaagtgcactttagccta 33160389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 410
Target Start/End: Complemental strand, 1015614 - 1015492
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||   ||||||| ||||  |||||||| ||||||||||||||||  |||||| ||| |||||||   ||| ||||||||||| || |||||     
T  1015614 gtcaaaattggggaaaaggaccaaatatgcaaagggactaattcttagggggttaaaattgtaggttttgtacacagggggccaaaattgtaacttttta 1015515  T
Q  389 aaagtta-gggtggaaaagtgca 410  Q
    ||||||| ||| |||||||||||    
T  1015514 aaagttaggggaggaaaagtgca 1015492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 2686425 - 2686479
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag 396  Q
    ||||||||||||||||||| ||| |||  ||||||||||||||||| ||||||||    
T  2686425 caaaattatagtttttgtacttaagagatcaaaattgcaagtttttaaaagttag 2686479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 415
Target Start/End: Complemental strand, 21835162 - 21835044
Alignment:
Q  298 tgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag 396  Q
    |||| |||||||||||| |||||||||   ||| |||||||||| ||||||| |||||||||||  |||| || ||||||  ||| ||||| ||| ||||    
T  21835162 tgactaaaaggatcaaagttgcaaaggggttaaatcttagggggtcaaaattgtagtttttgtacatagggggtcaaaatcacaactttttcaaacttag 21835063  T
Q  397 ggtggaaaagtgcacttta 415  Q
     | || |||||||||||||    
T  21835062 agggggaaagtgcacttta 21835044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 33158181 - 33158119
Alignment:
Q  336 agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    ||||| ||||||| ||||||||||| |||||  | ||||||||||||||||| ||||||||||    
T  33158181 aggggtcaaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttaggg 33158119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 420
Target Start/End: Original strand, 25524151 - 25524231
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta--gggtggaaaagtgcactttaaccta 420  Q
    ||||||| ||||||||||| ||||| |||||||||| ||| ||||| ||| |||  ||| |||||||||||||||| ||||    
T  25524151 caaaattgtagtttttgtacttagggggccaaaattacaaatttttaaaaattaggggggggaaaagtgcactttagccta 25524231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 366
Target Start/End: Complemental strand, 16650157 - 16650045
Alignment:
Q  256 ttacacgcatggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttag-ggggcaaaattatagt 353  Q
    |||||| | ||||||||||| || |||||||||  |||||||||||| ||||||| ||||  ||||||||   ||| |||||| ||| ||||||| ||||    
T  16650157 ttacacacgtggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 16650058  T
Q  354 ttttgtatttagg 366  Q
    ||||||| |||||    
T  16650057 ttttgtacttagg 16650045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 1797268 - 1797366
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| |||| | |||||| |||||||||  |||| ||||| ||| | |||||| |||||||||| | || |  |||||||||||||||||||    
T  1797268 gtcaaaattgaaaaaaggaatcaaagttgcaaaggggctaaatcttaagggaccaaaattgtagtttttgtttataaggagccaaaattgcaagttttt 1797366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 34893739 - 34893686
Alignment:
Q  345 aattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    |||| |||||||||||  ||||  ||||||||||||||||||| ||||||||||    
T  34893739 aattgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggg 34893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 2186846 - 2186774
Alignment:
Q  343 aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||||| |||||||||||  ||| || |||||||||||| ||||| ||| |||||| | |||| |||||||||    
T  2186846 aaaattgtagtttttgtacatagaagaccaaaattgcaactttttgaaacttagggggaaaaaatgcacttta 2186774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 2188889 - 2188929
Alignment:
Q  259 cacgcatggcatgccactcagcattgactgagtcaaaattg 299  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  2188889 cacgcgtggcatgccactcagtgttgactgagtcaaaattg 2188929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 5962597 - 5962668
Alignment:
Q  343 aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||||||||||||||||| ||||| | |||||||| ||| ||||| ||||| || | | ||||||||||||||    
T  5962597 aaaattatagtttttgtacttaggggaccaaaattacaaatttttgaaagtcagtg-gaaaaagtgcacttta 5962668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 428
Target Start/End: Original strand, 45149941 - 45150081
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg--gcaaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||| | ||||||||||||  ||||||||  |||| |||||||||  |||||||| | ||||||||| ||| | ||||||||||||||||||||    
T  45149941 gtcaaaattggccaaaaggatcaaagatgcaaaggggctaaatcttagggggggcaaaattgttgtttttgtacttaaggggccaaaattgcaagttttt 45150040  T
Q  388 taaagttagggtggaaaagtgcactttaacctaaaattttc 428  Q
     |||||||||| |||||||||||||||||||||||||||||    
T  45150041 gaaagttaggggggaaaagtgcactttaacctaaaattttc 45150081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 423
Target Start/End: Complemental strand, 24422965 - 24422795
Alignment:
Q  256 ttacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagt 353  Q
    |||||| | ||||||||||| ||| | ||||||  |||||||||||| |||||||||||| |||||| ||  |||| ||||||||||| |||||| ||||    
T  24422965 ttacacacgtggcatgccacacaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagt 24422866  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||||||||||| |||||||    
T  24422865 ttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcactttagcctaaaa 24422795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 43058916 - 43058784
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||||||||  || |||||  |||| |||||| |||| |||||| ||||||||||| ||||| || |||||||||||||||||    
T  43058916 agtcaaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttagagggctaaaattgtagtttttgtacttagggggtcaaaattgcaagttttt 43058817  T
Q  388 taaagttagggtggaaaagtgcactttaaccta 420  Q
     |||||||||| | ||||||| |||||||||||    
T  43058816 caaagttagggggaaaaagtgtactttaaccta 43058784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 50680462 - 50680330
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||||||||  ||||||||   ||| ||||||||| | ||||||||||||||| || ||||| ||||||||||||||||||||    
T  50680462 agtcaaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttaggggactaaaattatagtttttatacttagggggccaaaattgcaagttttt 50680363  T
Q  388 taaagttagggtggaaaagtgcactttaaccta 420  Q
      |||||| || |||||| ||||||||||||||    
T  50680362 ggaagttaagggggaaaaatgcactttaaccta 50680330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 419
Target Start/End: Original strand, 24426046 - 24426177
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||| |||||| |||||| ||  |||| ||||||||| | |||||| ||||||||||| ||||| ||||||||||||||||||||     
T  24426046 gtcaaaattgaccaaaagtatcaaatttgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttg 24426145  T
Q  389 aaagttag-ggtggaaaagtgcactttaacct 419  Q
    |||||||| || || |||||||||||||||||    
T  24426146 aaagttagaggggggaaagtgcactttaacct 24426177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 39699738 - 39699864
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||||||| ||| |||||| ||  |||| ||||||||||| |||||| |||||| |||| ||||| || |||||||||||||| ||     
T  39699738 gtcaaaattgaccaaaaggattaaagttgcaatggggctaaatcttagggggccaaaattgtagtttctgtacttagggggtcaaaattgcaagttattg 39699837  T
Q  389 aaagttagggtggaaaagtgcacttta 415  Q
    |||||||||| ||||||||||||||||    
T  39699838 aaagttaggggggaaaagtgcacttta 39699864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 256 - 415
Target Start/End: Complemental strand, 52275133 - 52274971
Alignment:
Q  256 ttacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagt 353  Q
    |||||| | ||||||||||| ||| | ||||||  |||||||||||| |||||||||||| |||||| |   |||| ||||||||| | |||||| ||||    
T  52275133 ttacacacttggcatgccacgcaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatgaggctaaatcttaggggcccaaaattgtagt 52275034  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttagggtgg-aaaagtgcacttta 415  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||| || ||||||||||||||    
T  52275033 ttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcacttta 52274971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 276 - 424
Target Start/End: Complemental strand, 41364972 - 41364823
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  |||| || |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||||||||| |||||||    
T  41364972 tcagcgttgactaggtcaaaattgatcaaaatgaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtatttagggggccaaa 41364873  T
Q  375 attgcaagttttttaaagttagggtggaaaagtgcactttaacctaaaat 424  Q
    ||||||||||||| ||||||||||  ||||||||||||||| || |||||    
T  41364872 attgcaagtttttgaaagttaggggagaaaagtgcactttagccaaaaat 41364823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 420
Target Start/End: Complemental strand, 14999445 - 14999283
Alignment:
Q  256 ttacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagt 353  Q
    |||||| |||||||||||||  || ||||||| | ||||||||||||||||||||||||| ||||| | || |||| |   || ||  ||||||| ||||    
T  14999445 ttacacacatggcatgccacgtaggcattgaccg-gtcaaaattgacaaaaaggatcaaagttgcagatgagctaaat---agaggatcaaaattgtagt 14999350  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||| |||||||| ||||||| ||||    
T  14999349 ttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggaaaagtacactttagccta 14999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 23980490 - 23980570
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaa 421  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||| || |||||||||||||||| |||||    
T  23980490 caaaattatagtttttgtacttagggagccaaaattgcaagttttttaaagttagagggggaaaagtgcactttagcctaa 23980570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 422
Target Start/End: Original strand, 35595127 - 35595298
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaatt-atag 352  Q
    ||||||| | ||||||||||  ||||||||||||  |||||||||||| ||||||| ||||  ||||||||  |||| ||||||||| |||||||  |||    
T  35595127 attacacacgtggcatgccaaatcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggccaaaattgttag 35595226  T
Q  353 tttttgtatttaggaggccaaaattgc-aagttttttaaagttag-ggtggaaaagtgcactttaacctaaa 422  Q
    ||||| ||  |||| || ||||||||| ||||||||||||||||| || |||||||| ||||||| ||||||    
T  35595227 tttttatacatagggggtcaaaattgctaagttttttaaagttagagggggaaaagtacactttagcctaaa 35595298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 420
Target Start/End: Original strand, 52276099 - 52276266
Alignment:
Q  256 ttacacgcatggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaatt-atagt 353  Q
    |||||||| ||||||||||  || || ||||||  |||||||||||  |||||||||||| |||||| ||  |||| ||||||||| | ||||| |||||    
T  52276099 ttacacgcgtggcatgccatgcaagcgttgactaggtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggggactaaatttatagt 52276198  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaaccta 420  Q
    ||||||| ||||| |||||||||| ||| ||||| ||||||||  | || ||||||||||||||||||    
T  52276199 ttttgtacttagggggccaaaattacaaatttttgaaagttagaagggggaaagtgcactttaaccta 52276266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 39698692 - 39698566
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    |||||||||||| |||||||| ||| |||||| |   |||| |||||| || |||||||||||||| |||| ||||| ||||||||||| |||||||| |    
T  39698692 gtcaaaattgaccaaaaggattaaagttgcaacgaggctaaatcttagtggccaaaattatagtttctgtacttagggggccaaaattgaaagtttttaa 39698593  T
Q  390 aagtt-agggtggaaaagtgcacttta 415  Q
    ||||| |||| || |||||||||||||    
T  39698592 aagttaaggggggtaaagtgcacttta 39698566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 423
Target Start/End: Original strand, 11437144 - 11437305
Alignment:
Q  265 tggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatt 362  Q
    |||||||||||| | || ||||||  |||||||||||| ||||||||||||  || ||| |   ||| ||||||||||| |||||| ||||||||||| |    
T  11437144 tggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggatcaaagatgtaaaagggttaaatcttagggggccaaaattgtagtttttgtact 11437243  T
Q  363 taggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaaaa 423  Q
    || | | |||||||||||||||||| |||||| |||| | |||||||||||||| |||||||    
T  11437244 taagggaccaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcctaaaa 11437305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 415
Target Start/End: Original strand, 45157170 - 45157306
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||| |||||||||||| ||||||| ||||  ||||||||   ||| |||||  ||| ||||||| |||||||||||  |||| ||||||||||    
T  45157170 gcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaatt 45157268  T
Q  378 gcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||||||||| ||| |||||| || |||||||||||||    
T  45157269 gcaagtttttgaaacttagggggggaaagtgcacttta 45157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 51684510 - 51684369
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||| | ||||||| ||||  ||||||||  |||| ||||||||||| |||||| |||||||| ||  |||| |||||||    
T  51684510 tcagcgttgacttggtcaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggggccaaa 51684411  T
Q  375 attgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||||||| ||||| |||||| |||| ||||||||||||||||    
T  51684410 attgcaactttttaaaagttaaggggggaaaagtgcacttta 51684369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 289 - 415
Target Start/End: Original strand, 36613874 - 36614002
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||  |||||||  ||| ||||||||   |||| |||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  36613874 agtcaaaattgatcaaaaggactaaagttgcaaagaggctaaatcttagggggtcaaaattgtagtttttgtacttagggggccaaaattacaagttttt 36613973  T
Q  388 taaagtta-gggtggaaaagtgcacttta 415  Q
     ||||||| ||| |||||| |||||||||    
T  36613974 aaaagttaggggaggaaaaatgcacttta 36614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 35594346 - 35594220
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||| | ||||||| ||||  ||||||||  |||| | ||||||| ||||||| |||||||  || ||||| || |||||||||||||||||     
T  35594346 agtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttaggggtcaaaattgtagttttaatacttagg-ggtcaaaattgcaagtttttg 35594248  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||||||||||||||||||||    
T  35594247 aaagttaggggtggaaaagtgcacttta 35594220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 37526848 - 37526979
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||  |||| || ||||  ||||||||  |||| ||||||||| ||||||| | |||| | ||||||||  |||||||||||||||||||     
T  37526848 agtcaaaattgatcaaaaagaccaaagatgcaaaggggctaaatcttaggggccaaaattgtggtttctatatttagggagccaaaattgcaagtttttg 37526947  T
Q  389 aaagtt-agggtggaaaagtgcactttaacct 419  Q
    |||||| |||| |||||||| |||||||||||    
T  37526948 aaagttaaggggggaaaagtacactttaacct 37526979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 419
Target Start/End: Original strand, 39153052 - 39153218
Alignment:
Q  255 attacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||| | |||||||||||  || ||||||||| |||||||||||| ||||||| ||||  ||||||||   ||| |||||| ||| ||||||| |||    
T  39153052 attacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtag 39153150  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacct 419  Q
    ||||||||  || | |||||||||||||||||||| ||| || |||| | ||||||||||||||||||    
T  39153151 tttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcactttaacct 39153218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 424
Target Start/End: Original strand, 51685739 - 51685872
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaa 391  Q
    ||||||| | ||||||| ||||  ||||||||  |||| |||||||||| ||||||| |||||||||||  |||  ||||||||| |||| ||||| |||    
T  51685739 aaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacatagagggccaaaatcgcaactttttgaaa 51685838  T
Q  392 gttag-ggtggaaaagtgcactttaacctaaaat 424  Q
    ||||| || |||||||||||||||| ||||||||    
T  51685839 gttagagggggaaaagtgcactttagcctaaaat 51685872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 423
Target Start/End: Original strand, 52828027 - 52828176
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| |||||  ||||||    
T  52828027 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggagccaaa 52828126  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||||||||| ||| |||| || ||||||||||||||||||||||||    
T  52828127 attgcaagtttttgaaaattagagggggaaaagtgcactttaacctaaaa 52828176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 405
Target Start/End: Original strand, 14999926 - 15000042
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagg-gggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||||||||||| ||||||| | ||||| | ||||| || ||  ||| ||| ||||||| ||||| |  |||||||||||||||||     
T  14999926 gtcaaaattgacaaaaaggatcaaagttgcaaatggactaaattttaggtggtcatgattgtagattttgtacttaggggatcaaaattgcaagttttta 15000025  T
Q  389 aaagttagggtggaaaa 405  Q
    |||||||||| ||||||    
T  15000026 aaagttagggaggaaaa 15000042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 420
Target Start/End: Complemental strand, 7983179 - 7983048
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||||||| ||| |||||| ||   ||| |||||||||| ||||||| | |||||  ||  |||| ||||||||||||||||| ||     
T  7983179 gtcaaaattgaccaaaaggatgaaatttgcaatggggataaatcttaggggggcaaaattgtggttttgatacatagggggccaaaattgcaagttgttg 7983080  T
Q  389 aaagttagggtggaaaagtgcactttaaccta 420  Q
    ||||||| ||  ||||||||||||||||||||    
T  7983079 aaagttacgggagaaaagtgcactttaaccta 7983048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 420
Target Start/End: Complemental strand, 7674603 - 7674526
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    ||||||| ||||||||||| ||||| | |||||||||||||||||| |||||||||| ||||||| |||||||| ||||    
T  7674603 caaaattgtagtttttgtacttagg-gcccaaaattgcaagtttttaaaagttaggggggaaaagggcactttagccta 7674526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 415
Target Start/End: Complemental strand, 11436198 - 11436045
Alignment:
Q  265 tggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatt 362  Q
    |||||||||||| || | ||||||  |||||||||||| ||||| | ||||  |||||| |   ||| ||||||||||| |||||| |||||||| || |    
T  11436198 tggcatgccacttaggcgttgactcggtcaaaattgaccaaaagaaccaaagatgcaaatgggttaaatcttagggggccaaaattgtagtttttatact 11436099  T
Q  363 taggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||  ||||||||||||||||||||| |||||| | || ||||||||||||||||    
T  11436098 taaaaggccaaaattgcaagtttttgaaagttaaagggggaaaagtgcacttta 11436045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 424
Target Start/End: Original strand, 43059976 - 43060113
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  |||||| || |||| ||||| |||| ||||||| ||||||||||| ||| | || ||||||| ||| |||||    
T  43059976 agtcaaaattgaccaaaaggaccaaagatgcaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacttaaggggtcaaaatttcaaattttt 43060075  T
Q  388 taaagttag-ggtggaaaagtgcactttaacctaaaat 424  Q
     |||||||| || || ||||| ||||||| ||||||||    
T  43060076 gaaagttagagggggtaaagtacactttagcctaaaat 43060113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 7675457 - 7675536
Alignment:
Q  317 tgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta 395  Q
    ||||||||  |||| |||||||||| |||||||||| ||||| || |||||||| ||||||||||||||||| |||||||    
T  7675457 tgcaaaggggctaaatcttagggggtcaaaattataatttttttacttaggagggcaaaattgcaagtttttgaaagtta 7675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 44411937 - 44412032
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtt 384  Q
    |||||||||| |||||||||||||| |||||||||  |||| |||| | |||| |||||| ||||||||||| ||||| | | |||||||||||||    
T  44411937 gtcaaaattggcaaaaaggatcaaagttgcaaagggcctaaatcttaaaggggtaaaattgtagtttttgtacttaggggactaaaattgcaagtt 44412032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 45148710 - 45148584
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | ||||||| ||||  ||||||||   ||| |||||||||| ||||||| |||||||| || ||||| ||||||||||||||||||||     
T  45148710 gtcaaaattggccaaaaggaccaaagatgcaaaggggttaaatcttaggggggcaaaattgtagttttt-tacttagggggccaaaattgcaagtttttg 45148612  T
Q  389 aaagtt-agggtggaaaagtgcacttta 415  Q
    |||||| || | | ||||||||||||||    
T  45148611 aaagttaagcgggaaaaagtgcacttta 45148584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 420
Target Start/End: Original strand, 35066971 - 35067105
Alignment:
Q  288 gagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttt 386  Q
    |||||||||||||| |||||||  |  ||||||||||  |||| | |||||||| ||||||| ||||||||||   |||| ||||||||| |||| ||||    
T  35066971 gagtcaaaattgaccaaaaggactattattgcaaaggggctaaatattagggggccaaaattgtagtttttgttcatagggggccaaaatcgcaactttt 35067070  T
Q  387 ttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    | ||| || |||| |||||||||||||||| ||||    
T  35067071 tgaaacttaaggggggaaaagtgcactttagccta 35067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 419
Target Start/End: Original strand, 43378684 - 43378814
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||| ||| |||||||| |||  ||||||||  |||| ||||||| || ||||||| || |||||||| ||||| |  |||||||| ||||||||     
T  43378684 gtcaaaatcgaccaaaaggattaaagatgcaaaggtgctaaatcttaggtggtcaaaattgtaatttttgtacttaggggatcaaaattgtaagtttttg 43378783  T
Q  389 aaagttagggtggaaaagtgcactttaacct 419  Q
    ||||||| |   |||||||||||||||||||    
T  43378784 aaagttaagagagaaaagtgcactttaacct 43378814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 422
Target Start/End: Complemental strand, 39152071 - 39151927
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||| |||||||||||| ||||||| ||||  ||||||||   ||| |||||  | | ||||||| |||||||||||  |||| ||||||||||    
T  39152071 gcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagagtcaaaattgtagtttttgtacatagggggccaaaatt 39151973  T
Q  378 gcaagttttttaaagtt-agggtggaaaagtgcactttaacctaaa 422  Q
     ||||||||| ||| || |||| | |||| ||||||||||||||||    
T  39151972 acaagtttttgaaacttaagggggaaaaaatgcactttaacctaaa 39151927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 36612979 - 36612856
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaa 391  Q
    ||||||||| |||| || ||||  |||||||| ||||| ||||||||||  |||||| ||||||||||| ||| ||  |||||||||||| ||||| |||    
T  36612979 aaaattgaccaaaatgaccaaagatgcaaagggactaaatcttagggggttaaaattgtagtttttgtacttaagat-ccaaaattgcaaatttttgaaa 36612881  T
Q  392 gtt-agggtggaaaagtgcacttta 415  Q
    ||| |||| |||||| |||||||||    
T  36612880 gttaaggggggaaaaatgcacttta 36612856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 52827477 - 52827350
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggca-aaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||   ||||||| |||| |||||| ||  |||| ||||||||||   ||||| | ||||| ||| ||||| || |||||||||||||||||     
T  52827477 gtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttg 52827378  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||| ||||||||||||||||    
T  52827377 aaagttagggggggaaaagtgcacttta 52827350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 33088609 - 33088715
Alignment:
Q  311 caaaattgcaaaggaactaattcttaggg-ggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtg 408  Q
    |||| |||||||||  |||| |||||||| ||||||||| ||||||||||| |||   || ||||||||||||||||| || ||||| |  |||||||||    
T  33088609 caaagttgcaaaggggctaaatcttagggaggcaaaattgtagtttttgtacttaaagggtcaaaattgcaagtttttgaatgttagagagggaaaagtg 33088708  T
Q  409 cacttta 415  Q
    |||||||    
T  33088709 cacttta 33088715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 44404524 - 44404466
Alignment:
Q  337 gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta 395  Q
    |||| ||||||||||||||||||| ||||| ||| |||||||| ||||||| |||||||    
T  44404524 ggggccaaaattatagtttttgtacttagggggctaaaattgctagtttttgaaagtta 44404466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 415
Target Start/End: Original strand, 41366115 - 41366228
Alignment:
Q  303 aaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagg-gtgg 401  Q
    ||||||| |||| |||||| ||  |||| ||||||||||| ||||| | |||||  || ||| | ||| ||||||||| |||||| ||||||||| | ||    
T  41366115 aaaaggaccaaagttgcaatggggctaaatcttagggggctaaattgtggttttgatacttaaggggctaaaattgcatgtttttgaaagttaggagggg 41366214  T
Q  402 aaaagtgcacttta 415  Q
    ||||||||||||||    
T  41366215 aaaagtgcacttta 41366228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 2940422 - 2940362
Alignment:
Q  263 catggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaag 323  Q
    |||| ||||||||| ||| ||||||  ||||||||| || |||||||||||||||||||||    
T  2940422 catgccatgccactaagcgttgacttggtcaaaattaactaaaaggatcaaaattgcaaag 2940362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 39222505 - 39222572
Alignment:
Q  350 tagtttttgtatttaggaggccaaaattgcaagttttttaaagtt--agggtggaaaagtgcacttta 415  Q
    |||||||| || ||||| |||||||||||||||||||| ||||||  |||| | ||||||||||||||    
T  39222505 tagtttttatacttagggggccaaaattgcaagtttttgaaagttaaagggggtaaaagtgcacttta 39222572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 46525772 - 46525862
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaa 381  Q
    |||||||||||| ||||| |||| |||||||||||  |||| ||||||||||| ||||| |  ||||| |  ||||||||||||||| ||||    
T  46525772 gtcaaaattgaccaaaag-atcacaattgcaaaggggctaaatcttagggggccaaattttcattttttttattaggaggccaaaatcgcaa 46525862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 426
Target Start/End: Original strand, 30249447 - 30249599
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| |||||| ||||||||||||  |||| |||||||  | |||| || |||| |||| ||||| ||||||| |||||||||||  ||  ||  ||||    
T  30249447 tcagcgttgactaagtcaaaattgatcaaaaagatcaaagatacaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacataaaagatcaaa 30249546  T
Q  375 attgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaaattt 426  Q
    ||| ||| ||||| ||||||| ||  |||| |||||||||||| |||| ||||    
T  30249547 attacaactttttgaaagttacggagggaagagtgcactttaatctaagattt 30249599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Complemental strand, 33064911 - 33064871
Alignment:
Q  419 taaaattttctctgagattgatggtataggataggggttct 459  Q
    ||||||||||||||||||||  |||||||||| ||||||||    
T  33064911 taaaattttctctgagattggcggtataggatgggggttct 33064871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 11287906 - 11287779
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||| ||||| ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||| ||||  |||||||||||||||||||||    
T  11287906 gtcaaaattgataaaaatgatcaaaattgcaaaggagttaattcttagggggccaaaattgtagtttctgtacttagtgggccaaaattgcaagtttttt 11287807  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||||| ||||||||||||||    
T  11287806 aaagttaggggtgaaaaagtgcacttta 11287779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 426
Target Start/End: Complemental strand, 24123012 - 24122875
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||||| ||||  ||||||| | |||| ||||||||| | |||||||||||||||||| ||||| || ||||||||||| ||||||    
T  24123012 gtcaaaattgaccaaaaggaccaaagatgcaaagaagctaaatcttaggggactaaaattatagtttttgtacttagggggtcaaaattgcaaatttttt 24122913  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaattt 426  Q
    |||||||||| |||||| ||||||||| ||||||||||    
T  24122912 aaagttaggggggaaaaatgcactttagcctaaaattt 24122875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 12353332 - 12353457
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||| || |||||||||| ||  |||| ||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||     
T  12353332 gtcaaaattgaccaaaagaattaaaattgcaatggggctaaatcttagggggccaaaattatagtttt-gtacttagggggccaaaattgcaagtttttg 12353430  T
Q  389 aaagttagggtggaaaagtgcacttta 415  Q
    ||||||| || ||||||||||||||||    
T  12353431 aaagttaagggggaaaagtgcacttta 12353457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 5514122 - 5513980
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaatt 377  Q
    ||||||| | ||||||||||||  ||||||| ||||  ||||||||  |||| | |||||||| ||||||| ||||||||||| ||||| ||||||||||    
T  5514122 gcattgaataagtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaattttaggggggcaaaattgtagtttttgtacttagggggccaaaatt 5514023  T
Q  378 gcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    | |||||||| |||||||||| | |||||||||||||| ||||    
T  5514022 ggaagtttttgaaagttagggggtaaaagtgcactttagccta 5513980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 18978149 - 18978015
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  ||||||||||||| |||||||||  |||| ||||| ||||| |||||| ||||||||||| ||||| ||||||||||| ||| ||||     
T  18978149 gtcaaaattggaaaaaaggatcaaagttgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacttagggggccaaaattgaaagattttg 18978050  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaa 423  Q
    |||||||||| ||||||||||  || |||||||||    
T  18978049 aaagttaggggggaaaagtgctattaaacctaaaa 18978015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 18979091 - 18979218
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| |||||||||||||| ||||||| |  |||| || || ||||| |||||| |||||||| |||||||| ||||||||||||||||| ||     
T  18979091 gtcaaaattggcaaaaaggatcaaagttgcaaatgggctaaatcataaggggccaaaattgtagtttttatatttagggggccaaaattgcaagttgttg 18979190  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||| ||||||||||||||||    
T  18979191 aaagttagggggggaaaagtgcacttta 18979218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 420
Target Start/End: Complemental strand, 11282152 - 11282006
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  |||| |||||||||||||||||   ||| |||||||||| ||||||| |  ||||||||| |||| |||||||    
T  11282152 tcagcgttgactttgtcaaaattgatcaaaaagatcaaaattgcaaaggggttaaatcttagggggtcaaaattgtcatttttgtatatagggggccaaa 11282053  T
Q  375 attgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||||||| ||||| |||||| |||| | |||||||||||||||||||    
T  11282052 attgcaactttttaaaagttaagggggaaaaagtgcactttaaccta 11282006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 18971040 - 18970906
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| ||||||||| |||| |||||||||   ||| |||| ||||| ||||||| ||||||||||| ||||| ||||||||||| ||| ||||     
T  18971040 gtcaaaattggcaaaaaggaccaaagttgcaaaggggttaaatcttcaggggtcaaaattgtagtttttgtacttagggggccaaaattgaaagattttg 18970941  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaa 423  Q
    |||||||||| ||||||||||  || |||||||||    
T  18970940 aaagttaggggggaaaagtgctattaaacctaaaa 18970906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 45113000 - 45112875
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||||| ||||| |||||||||||||||||  ||||||||||||||  |||||||||| |||||||| ||| ||| | |||||| ||| |||||    
T  45113000 agtcaaaattgataaaaaagatcaaaattgcaaaggggctaattcttaggggaccaaaattataatttttgtactta-gagactaaaattacaaattttt 45112902  T
Q  388 taaagttagggtggaaaagtgcacttt 414  Q
     |||||||||| |||||| ||||||||    
T  45112901 gaaagttagggaggaaaaatgcacttt 45112875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 277 - 417
Target Start/End: Original strand, 29968296 - 29968436
Alignment:
Q  277 cagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaa-aattatagtttttgtatttaggaggccaaaa 375  Q
    |||||||||| | |||||||||| | |||| ||| ||| |||||| ||  |||| ||||||||| | | |||| ||||||||||| ||||| ||||||||    
T  29968296 cagcattgaccg-gtcaaaattggccaaaatgattaaagttgcaatggggctaaatcttaggggaccagaattgtagtttttgtacttagggggccaaaa 29968394  T
Q  376 ttgcaagttttttaaagttagggtggaaaagtgcactttaac 417  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  29968395 ttgcaagtttttaaaagttaagggggaaaagtgcactttaac 29968436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 10006475 - 10006347
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||||  |||| ||||||||||| |||||| | |||||  || ||||| ||||||||||||||||||||    
T  10006475 agtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagttttt 10006376  T
Q  388 taaagttag-ggtggaaaagtgcacttta 415  Q
     |||||||| || ||||||||||||||||    
T  10006375 gaaagttagagggggaaaagtgcacttta 10006347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 415
Target Start/End: Original strand, 22221334 - 22221462
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| | ||||||||||||  || |||||  |||| |||||||||| ||||||| |||||||  || ||||| || |||||||||||||||||    
T  22221334 agtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagttttt 22221433  T
Q  388 taaagtta-gggtggaaaagtgcacttta 415  Q
     ||||||| ||||||||||||||||||||    
T  22221434 gaaagttaggggtggaaaagtgcacttta 22221462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 415
Target Start/End: Original strand, 22227676 - 22227804
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| | ||||||||||||  || |||||  |||| |||||||||| ||||||| |||||||  || ||||| || |||||||||||||||||    
T  22227676 agtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagttttt 22227775  T
Q  388 taaagtta-gggtggaaaagtgcacttta 415  Q
     ||||||| ||||||||||||||||||||    
T  22227776 gaaagttaggggtggaaaagtgcacttta 22227804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 10007733 - 10007866
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||||  |||| ||||||||| | |||||| | |||| | || ||||| ||||||||||||||||||||    
T  10007733 agtcaaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtggtttctatacttagggggccaaaattgcaagttttt 10007832  T
Q  388 taaagtt-agggtggaaaagtgcactttaaccta 420  Q
     |||||| |||| |||||||||||||||| ||||    
T  10007833 gaaagttaaggggggaaaagtgcactttagccta 10007866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 5514294 - 5514373
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaa 421  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||||   |||||||||||||| |||||    
T  5514294 caaaattgtagtttttgtatttagaaggctaaaattgcaagttttttaaaattaggggataaaagtgcactttagcctaa 5514373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 415
Target Start/End: Complemental strand, 22220554 - 22220391
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | ||||||||||  ||||||||||||   ||||||||||  ||||||| ||||  |||||| |  |||| ||||||||||| |||||| |||    
T  22220554 attacacacgtggcatgccaaatcagcattgacttgctcaaaattgatcaaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtag 22220455  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    ||||| ||  |||| || ||||||||||||| |||||||||||| || ||||||||||||||||    
T  22220454 tttttatacatagggggtcaaaattgcaagtattttaaagttagagggggaaaagtgcacttta 22220391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 413
Target Start/End: Original strand, 1824048 - 1824174
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||    |||| ||||||||||| |||||| ||||||||||| ||||| | ||||||||||||||||||    
T  1824048 agtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagttttt 1824147  T
Q  388 taaagttag-ggtggaaaagtgcactt 413  Q
     |||||||| || |||||| |||||||    
T  1824148 gaaagttagagggggaaaaatgcactt 1824174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 413
Target Start/End: Original strand, 1858493 - 1858619
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||    |||| ||||||||||| |||||| ||||||||||| ||||| | ||||||||||||||||||    
T  1858493 agtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagttttt 1858592  T
Q  388 taaagttag-ggtggaaaagtgcactt 413  Q
     |||||||| || |||||| |||||||    
T  1858593 gaaagttagagggggaaaaatgcactt 1858619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 8388592 - 8388467
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||   ||||||| |||||  |||||||  |||| ||||||||||| ||||||||||||||||||  |||| ||| |||||||||| |||||     
T  8388592 gtcaaaattgggcaaaaggaccaaaaacgcaaaggggctaaatcttagggggccaaaattatagtttttgtacatagggggctaaaattgcaacttttta 8388493  T
Q  389 aaagttagggtggaaaagtgcacttta 415  Q
    |||||||||| || |||||||||||||    
T  8388492 aaagttaggg-gggaaagtgcacttta 8388467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 415
Target Start/End: Complemental strand, 30335795 - 30335642
Alignment:
Q  265 tggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatt 362  Q
    ||||||||||| || || ||||||  |||||||||||  ||||||| ||||  ||||||||  |||| ||||||||||  |||||| || |||||||| |    
T  30335795 tggcatgccacacatgcgttgacttggtcaaaattgaacaaaaggaccaaagatgcaaaggggctaaatcttagggggttaaaattgtaatttttgtact 30335696  T
Q  363 taggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    |||   ||||||||||||||||||| |||||| ||||||||||| |||||||||    
T  30335695 tagcgagccaaaattgcaagtttttaaaagttaagggtggaaaaatgcacttta 30335642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 415
Target Start/End: Original strand, 30336446 - 30336599
Alignment:
Q  265 tggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatt 362  Q
    ||||||||||| || |||||||||  |||||||||||| ||||||| ||||  ||||||    |||| |||||| |||  |||||| ||||||||||| |    
T  30336446 tggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagagggttaaaattgtagtttttgtact 30336545  T
Q  363 taggaggccaaaattgcaagttttttaaagttagggtggaa-aagtgcacttta 415  Q
    |||||||| ||||||  |||||||| |||||||||| |||| ||||||||||||    
T  30336546 taggaggctaaaattataagtttttgaaagttaggggggaagaagtgcacttta 30336599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 24123869 - 24123975
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||||| ||||  ||||||||  |||| ||||||| ||| |||||| || |||| ||| ||| ||||||||||||||||||||||     
T  24123869 gtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggaggctaaaattgtaattttagtacttaagaggccaaaattgcaagtttttg 24123968  T
Q  389 aaagtta 395  Q
    |||||||    
T  24123969 aaagtta 24123975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 12352051 - 12351915
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||||| | |||||||||| |   |||| |||||||||| ||||||| ||||||||||| ||||| || ||||||||||| |||||     
T  12352051 gtcaaaattgtccaaaagggttaaaattgcaatgaggctaaatcttagggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaaatttttg 12351952  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaaaat 424  Q
    |||||| |||| || ||| ||||||||| ||| ||||    
T  12351951 aaagttaagggggggaaaatgcactttagccttaaat 12351915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 24488688 - 24488759
Alignment:
Q  327 ctaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    |||| ||||| ||||||||||| | |||||  |||||||| |||||||||||||||||||| ||||||||||    
T  24488688 ctaaatcttacggggcaaaattgttgttttgatatttagggggccaaaattgcaagtttttgaaagttaggg 24488759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 423
Target Start/End: Original strand, 42982640 - 42982763
Alignment:
Q  302 aaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggt 399  Q
    ||||| ||||||||||| ||| |  ||||||||| ||||| ||||||| |||||||||| |  ||| |||||||||| ||| ||||| ||| |||  |||    
T  42982640 aaaaatgatcaaaattgtaaatgggctaattcttgaggggtcaaaattgtagtttttgtttacagggggccaaaattacaactttttaaaacttaaaggt 42982739  T
Q  400 ggaaaagtgcactttaacctaaaa 423  Q
    |||||||||||||||| |||||||    
T  42982740 ggaaaagtgcactttagcctaaaa 42982763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 43661395 - 43661268
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||| ||||| ||||| | ||||  ||||||||  |||| ||||||||||| ||||||||||||||||||  || | | ||||||||| || ||||||    
T  43661395 gtcaaagttgaccaaaagaaccaaagatgcaaaggggctaaatcttagggggccaaaattatagtttttgtacataagggaccaaaattgtaactttttt 43661296  T
Q  389 aaagtt-agggtggaaaagtgcacttta 415  Q
    ||| || ||||| |||||||||||||||    
T  43661295 aaaattaagggtagaaaagtgcacttta 43661268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 419
Target Start/End: Original strand, 40471107 - 40471248
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||  |||||||||||| |||| || ||||  | |||||    ||| ||||| ||||| |||||| ||||||||||||||| | | ||||||||    
T  40471107 gcattgactcggtcaaaattgaccaaaatgaccaaagatacaaagaggttaaatcttaaggggctaaaattgtagtttttgtatttatg-gaccaaaatt 40471205  T
Q  378 gcaagttttttaaagtt-agggtggaaaagtgcactttaacct 419  Q
    | ||||||||||||||| | || ||||||||||||||||||||    
T  40471206 gtaagttttttaaagttaaagggggaaaagtgcactttaacct 40471248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 415
Target Start/End: Original strand, 11283155 - 11283307
Alignment:
Q  265 tggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtattt 363  Q
    |||||||||||| ||| ||||||  |||||||||||| |||| |||||||||||||||||  |||| | |||||||  ||||||| |  ||||| ||  |    
T  11283155 tggcatgccactaagcgttgactttgtcaaaattgactaaaatgatcaaaattgcaaaggggctaaattttaggggaccaaaattgtcatttttatacat 11283254  T
Q  364 aggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||| ||| |||||| ||| ||||| |||||| |||| || ||| |||||||||    
T  11283255 agggggctaaaattacaactttttgaaagttaagggggggaaaatgcacttta 11283307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 423
Target Start/End: Complemental strand, 30569025 - 30568882
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattg 378  Q
    ||||||||| |||| ||||| | ||||||| ||||  ||||||||  |||| |||||||||  |||||||||||||||||||  || |||  ||||||||    
T  30569025 cattgactg-gtcacaattggccaaaaggaccaaagatgcaaaggggctaaatcttaggggatcaaaattatagtttttgtacctaagagatcaaaattg 30568927  T
Q  379 caagttttttaaagttagggtggaaaagtgcactttaacctaaaa 423  Q
     || ||||| ||| |||| | || ||||||||||||| |||||||    
T  30568926 taactttttgaaacttagagggggaaagtgcactttagcctaaaa 30568882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 32207349 - 32207421
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||| ||||||||||| |||||  | ||||||||||||||||| || ||||||| || |||||||||||||    
T  32207349 caaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggttaggg-gggaaagtgcacttta 32207421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 459
Target Start/End: Complemental strand, 17279220 - 17279180
Alignment:
Q  419 taaaattttctctgagattgatggtataggataggggttct 459  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  17279220 taaaattttctctgagattggtggtataggatgggggttct 17279180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 459
Target Start/End: Complemental strand, 17275677 - 17275638
Alignment:
Q  420 aaaattttctctgagattgatggtataggataggggttct 459  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  17275677 aaaattttctctgagattggtggtataggatgggggttct 17275638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 24483201 - 24483146
Alignment:
Q  361 tttaggaggccaaaattgcaagttttttaaagttagg-gtggaaaagtgcacttta 415  Q
    |||||| |||||||||||||||||||| ||| ||||| | ||||||||||||||||    
T  24483201 tttagggggccaaaattgcaagtttttgaaaattaggaggggaaaagtgcacttta 24483146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 1823728 - 1823566
Alignment:
Q  246 aattagtttattacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaat-tgcaaaggaactaattcttagggggca 343  Q
    ||||| |||||||||| |||||| ||||||  || | |||| | | ||||||||| | ||||||| |||||  |||||| |  |||| ||||||||| |     
T  1823728 aattaatttattacacacatggcctgccacgtaggcgttgaataaatcaaaattggccaaaaggaccaaaaaatgcaaatgggctaaatcttaggggacc 1823629  T
Q  344 -aaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaa 405  Q
     ||||| ||||||||||| ||||  || ||||||||||||||||| ||||||| || ||||||    
T  1823628 gaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaa 1823566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 1858173 - 1858011
Alignment:
Q  246 aattagtttattacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaat-tgcaaaggaactaattcttagggggca 343  Q
    ||||| |||||||||| |||||| ||||||  || | |||| | | ||||||||| | ||||||| |||||  |||||| |  |||| ||||||||| |     
T  1858173 aattaatttattacacacatggcctgccacgtaggcgttgaataaatcaaaattggccaaaaggaccaaaaaatgcaaatgggctaaatcttaggggacc 1858074  T
Q  344 -aaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaa 405  Q
     ||||| ||||||||||| ||||  || ||||||||||||||||| ||||||| || ||||||    
T  1858073 gaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaa 1858011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 8389646 - 8389792
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| ||||| || |||||   ||| ||||||||| | |||||| |||||||||||  || | | |||||    
T  8389646 tcagctttgacttggtcaaaattgttcaaaaggaccaaaaatgtaaaggggttaaatcttaggggactaaaattgtagtttttgtacataagggaccaaa 8389745  T
Q  375 attgcaagttttttaaagttagg-gtggaaaagtgcactttaaccta 420  Q
    ||||||| ||||| ||| ||| | | |||||||||||||||||||||    
T  8389746 attgcaactttttgaaacttaagaggggaaaagtgcactttaaccta 8389792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 11288914 - 11288963
Alignment:
Q  372 aaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaaccta 420  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||| ||||    
T  11288914 aaaattgcaagtttttgaaagttaggggtgaaaaagtgcactttagccta 11288963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 24359900 - 24359812
Alignment:
Q  327 ctaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||| |||||||||| ||||||| |||||||||||| || ||||| ||||| |||| ||||| |||||||| | | ||||| ||||||||    
T  24359900 ctaaatcttagggggtcaaaattgtagtttttgtatata-gaggcaaaaatcgcaactttttaaaagttagagggaaaaagagcacttta 24359812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 36249608 - 36249555
Alignment:
Q  363 taggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||||||||||||||||||| ||||| ||| || |||| ||||||||||||||||    
T  36249608 taggaggccaaaattgcaactttttgaaacttaaggggggaaaagtgcacttta 36249555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 11456694 - 11456634
Alignment:
Q  363 taggaggccaaaattgcaagttttttaaagttagggtg-gaaaagtgcactttaacctaaa 422  Q
    |||| |||||||||||||| ||||| ||| |||||| | ||||||||||||||| ||||||    
T  11456694 tagggggccaaaattgcaaatttttgaaaattagggggagaaaagtgcactttagcctaaa 11456634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 34625161 - 34625241
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgt 359  Q
    |||||||| ||||||||||||| |||||||||||| |||| |||    ||| || |||||||| |||||| ||||||||||    
T  34625161 cattgactaagtcaaaattgaccaaaaggatcaaagttgcgaagagggtaaatcatagggggctaaaattgtagtttttgt 34625241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 45114568 - 45114612
Alignment:
Q  370 ccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactt 413  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||    
T  45114568 ccaaaattgcaagtttttgaaagttaggggcggaaaagtgcactt 45114612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 7268798 - 7268929
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||  |||||||| |||||||||| || ||||| ||||||| ||| |||||| |||||| | || ||||||||||||||||||||||||||     
T  7268798 gtcaaaattgatcaaaaggattaaaattgcaatgggactaaatcttaggaggccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttg 7268897  T
Q  389 aaagttagggtggaaaagtgcactttaaccta 420  Q
    |||||||||| |||||||||||||||||||||    
T  7268898 aaagttaggggggaaaagtgcactttaaccta 7268929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 54539886 - 54539758
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| |||||||||||||| ||||||| || |||| |||||||||  ||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  54539886 agtcaaaattggcaaaaaggatcaaagttgcaaatgagctaaatcttaggggatcaaaattgtagtttttgtatttagggggttaaaattgcaagttttt 54539787  T
Q  388 taaagtt-agggtggaaaagtgcacttta 415  Q
     |||||| |||||||||||||||||||||    
T  54539786 gaaagttaagggtggaaaagtgcacttta 54539758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 54540761 - 54540888
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||||||||||| |||||||||  |||| |||||||||| ||||||| ||||||||||| ||| | || |||||||||||||||||     
T  54540761 gtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 54540860  T
Q  389 aaagtt-agggtggaaaagtgcacttta 415  Q
    |||||| |||| ||||||||||||||||    
T  54540861 aaagttaaggggggaaaagtgcacttta 54540888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 7267773 - 7267639
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||||||| ||| |||||| |   |||| ||||||||||| |||||| |||||| |||| ||||| ||||||||||||||||||||     
T  7267773 gtcaaaattgaccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttg 7267674  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||| || ||||||||||||||||||||||||    
T  7267673 aaagttaagggggaaaagtgcactttaacctaaaa 7267639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 256 - 415
Target Start/End: Complemental strand, 8456642 - 8456481
Alignment:
Q  256 ttacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagt 353  Q
    |||||| | ||||||||||| ||| | ||||||  |||||||||||| |||||||||||| |||||| |   |||| ||||||||||| |||||| ||||    
T  8456642 ttacacacgtggcatgccacgcaggcgttgactaggtcaaaattgactaaaaggatcaaatttgcaatgaggctaaatcttagggggccaaaattgtagt 8456543  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||||    
T  8456542 ttttgtatttaggggaccaaaattgcaagtttttgaaaattagggggaaaaagtgcacttta 8456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 282 - 425
Target Start/End: Complemental strand, 29931364 - 29931219
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||||| |||||||||||| |||||||  |  ||||||||||   ||| ||||||||||| |||||| ||||||||||||||||| ||| |||||||||    
T  29931364 ttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgca 29931265  T
Q  381 agttttttaaagtta-gggtggaaaagtgcactttaacctaaaatt 425  Q
    ||||||| ||||||| |||||||||||||||||||| |||| ||||    
T  29931264 agtttttgaaagttaggggtggaaaagtgcactttagcctataatt 29931219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 282 - 425
Target Start/End: Complemental strand, 29980518 - 29980373
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||||| |||||||||||| |||||||  |  ||||||||||   ||| ||||||||||| |||||| ||||||||||||||||| ||| |||||||||    
T  29980518 ttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgca 29980419  T
Q  381 agttttttaaagtta-gggtggaaaagtgcactttaacctaaaatt 425  Q
    ||||||| ||||||| |||||||||||||||||||| |||| ||||    
T  29980418 agtttttgaaagttaggggtggaaaagtgcactttagcctataatt 29980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 55191967 - 55192072
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    |||||||||||||||| |||||||||||||||||   |||||||| ||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |    
T  55191967 tcaaaattgacaaaaatgatcaaaattgcaaaggggttaattcttgaggggccaaaattgtagtttttgtacttagagggccaaaattgcaagtttttga 55192066  T
Q  390 aagtta 395  Q
    ||||||    
T  55192067 aagtta 55192072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 424
Target Start/End: Complemental strand, 12700304 - 12700169
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||| |   |||| || ||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  12700304 agtcaaaattgaccaaaaggaccaaagatgcaatgtggctaaatcatagggggtcaaaattgtagtttttgtacttagggggccaaaattgcaagttttt 12700205  T
Q  388 taaagttagggtggaaaagtgcactttaacctaaaat 424  Q
     |||||||||| || ||||||||||||| ||||||||    
T  12700204 gaaagttaggg-gggaaagtgcactttagcctaaaat 12700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 423
Target Start/End: Original strand, 5029644 - 5029788
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaa-ttatagtttttgtatttaggaggccaaaattg 378  Q
    |||||||||||||||||| ||  |||||||  |||   |||| ||  ||||||||||||||| |||| || | ||||| ||| |||||||||||||||||    
T  5029644 cattgactgagtcaaaatagagcaaaaggacgaaataagcaatggggctaattcttaggggggaaaaattgtggttttggtacttaggaggccaaaattg 5029743  T
Q  379 caagttttttaaagttagggtggaaaagtgcactttaacctaaaa 423  Q
    |||| |||| |||| ||||| |||||||||||||||| |||||||    
T  5029744 caagattttgaaagataggggggaaaagtgcactttagcctaaaa 5029788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 422
Target Start/End: Complemental strand, 7758558 - 7758398
Alignment:
Q  265 tggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaa-ttatagtttttgtatt 362  Q
    |||||||||||| | || ||||||  |||||||||||| ||||||| ||||  | ||||||   ||| ||||||||||||||| || ||||||||||| |    
T  7758558 tggcatgccacttaagcgttgactaggtcaaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagggggcaaaaattgtagtttttgtact 7758459  T
Q  363 taggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaaa 422  Q
    |||| || ||||||||||||||||| |||||| |||| | |||||||||||||| ||||||    
T  7758458 tagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcctaaa 7758398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 22776783 - 22776915
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  |||| ||| ||||  ||||||||  |||||||||||||||| |||||| |||||||||||  |||| |||||||||||||| ||| |     
T  22776783 gtcaaaattgggaaaatggaccaaatatgcaaaggggctaattcttagggggccaaaattgtagtttttgtacatagggggccaaaattgcaactttctg 22776882  T
Q  389 aaagtta-gggtggaaaagtgcactttaaccta 420  Q
    ||||||| |||||||||||||||||||| ||||    
T  22776883 aaagttaggggtggaaaagtgcactttagccta 22776915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 29932670 - 29932796
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||||||  |  |||||||||| ||||| ||||| |||| ||||||| ||||||||||| ||||| ||||||||||||||||||||     
T  29932670 gtcaaaattggccaaaaggactattattgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttg 29932768  T
Q  389 aaagttag-ggtggaaaagtgcacttta 415  Q
    |||||||| || ||||||||||||||||    
T  29932769 aaagttagagggggaaaagtgcacttta 29932796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 29981824 - 29981950
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||||||  |  |||||||||| ||||| ||||| |||| ||||||| ||||||||||| ||||| ||||||||||||||||||||     
T  29981824 gtcaaaattggccaaaaggactattattgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttg 29981922  T
Q  389 aaagttag-ggtggaaaagtgcacttta 415  Q
    |||||||| || ||||||||||||||||    
T  29981923 aaagttagagggggaaaagtgcacttta 29981950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 47610537 - 47610683
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| |||||||    
T  47610537 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaa 47610636  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcactttaaccta 420  Q
    ||||||||||||| |||||||| || |||||||||||||||||||||    
T  47610637 attgcaagtttttgaaagttagagggggaaaagtgcactttaaccta 47610683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 55191647 - 55191544
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaa 381  Q
    |||||||| |||||| ||| |||||||||||||||||||||||  |||| ||||  | || ||||||||||||||||||||||||  | |||||||||||    
T  55191647 ttgactga-tcaaaagtgataaaaaggatcaaaattgcaaaggggctaaatcttgagagggaaaattatagtttttgtatttagggtgtcaaaattgcaa 55191549  T
Q  382 gtttt 386  Q
    |||||    
T  55191548 gtttt 55191544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 19984989 - 19984847
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||| |||||||||||| ||||||| ||||  ||||||||   ||| |||||  ||| ||||||| |||||||||||  |||| ||||||||||    
T  19984989 gcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaatt 19984891  T
Q  378 gcaagttttttaaagtta-gggtggaaaagtgcactttaaccta 420  Q
    |||||||||| ||| ||| ||| |||||||||||||||| ||||    
T  19984890 gcaagtttttgaaacttagggggggaaaagtgcactttagccta 19984847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 414
Target Start/End: Complemental strand, 24516562 - 24516464
Alignment:
Q  318 gcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtgg-aaaagtgcacttt 414  Q
    |||||||| |||| ||||| ||||| |||||| |||||||| || |||||  |||||||||||||||||||||||||||||| || |||||||||||||    
T  24516562 gcaaaggagctaaatcttaaggggccaaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 421
Target Start/End: Original strand, 51470412 - 51470558
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||| |||| ||||||||| || ||||| | ||||| ||| ||||| |  | ||    
T  51470412 tcagcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggagctaaatcttaggggtgctaaattgtggttttggtacttaggggatctaa 51470511  T
Q  375 attgcaagttttttaaagttagggtggaaaagtgcactttaacctaa 421  Q
    ||||||||||||| |||||||||| |||| ||||||||||| |||||    
T  51470512 attgcaagtttttgaaagttaggggggaagagtgcactttagcctaa 51470558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 426
Target Start/End: Original strand, 54986978 - 54987114
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||| |||||||  ||||||||| |||| |||||| ||| |||||||||||||||| ||  |||| | | ||||| |||| |||||     
T  54986978 gtcaaaattggccaaaatgatcaaagatgcaaaggagctaaatcttagagggtcaaaattatagtttttatacataggggactaaaatcgcaactttttg 54987077  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaattt 426  Q
    ||| |||||| |||||||||||||||||||| ||||||    
T  54987078 aaacttaggg-ggaaaagtgcactttaaccttaaattt 54987114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 429
Target Start/End: Original strand, 51038725 - 51038902
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | ||||||||||  ||||| ||||||  ||||||||||  |||||||| ||  ||||||||||    |||||||| ||| | |||||| |||    
T  51038725 attacacacgtggcatgccaaatcagcgttgactcggtcaaaattgctaaaaaggaccactattgcaaaggggacaattcttaagggaccaaaattgtag 51038824  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaaattttct 429  Q
    |||||||   |||| || ||||||||||| ||||| ||||||| |||||||||||||||||||| |||| | ||||||    
T  51038825 tttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcactttagcctatatttttct 51038902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 51470116 - 51469975
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggca-aaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||  |||| ||||||||||   ||||| | ||||| ||| ||||| |||||||    
T  51470116 tcagcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggccaaa 51470017  T
Q  375 attgcaagttttttaaagttaggg-tggaaaagtgcacttta 415  Q
    ||||||||||||| ||| ||||||  ||||||||||||||||    
T  51470016 attgcaagtttttgaaaattagggagggaaaagtgcacttta 51469975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 534592 - 534496
Alignment:
Q  327 ctaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaa 421  Q
    |||| ||||||||||| |||||| |||||||||||  ||||||| ||||||||||||||||| | |||||| || | |||||||||||||| |||||    
T  534592 ctaaatcttagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagtttttgagagttagaggggaaaaagtgcactttagcctaa 534496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 428
Target Start/End: Complemental strand, 49216377 - 49216237
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||| |||||||  |||||| || |||| ||||| |||| || |||| |||||||||||  |||| || ||||||||||| |||||     
T  49216377 gtcaaaattggccaaaatgatcaaagatgcaaatgagctaaatcttaaggggacataattgtagtttttgtacatagggggtcaaaattgcaactttttg 49216278  T
Q  389 aaagttagg-gtggaaaagtgcactttaacctaaaattttc 428  Q
    ||| ||||| |||||||||||||||||| || |||| ||||    
T  49216277 aaacttaggcgtggaaaagtgcactttagccaaaaaatttc 49216237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 11671373 - 11671444
Alignment:
Q  350 tagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaa 421  Q
    |||||||| |||||||| ||| |||||||||||||||| |||||||||  | |||||||||||||| |||||    
T  11671373 tagtttttatatttagggggctaaaattgcaagtttttgaaagttaggcggaaaaagtgcactttagcctaa 11671444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 426
Target Start/End: Complemental strand, 53614950 - 53614811
Alignment:
Q  288 gagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||||| ||||||     |||||||| |  ||||||||| |||| ||||||| |||||||| ||| |||  | | ||||||| ||||||||    
T  53614950 gagtcaaaattgacataaaggactgctattgcaaatgggctaattcttgggggccaaaattgtagtttttatatatagaggactaaaattgtaagttttt 53614851  T
Q  388 taaagtt-agggtggaaaagtgcactttaacctaaaattt 426  Q
     |||||| |||| |||||| ||||||||| ||||||||||    
T  53614850 gaaagttaagggaggaaaaatgcactttagcctaaaattt 53614811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 12703519 - 12703597
Alignment:
Q  337 gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||| ||||||| ||||||||||| ||||| |||||||||| ||| ||||| |||||||| | | ||||||||||||||    
T  12703519 ggggccaaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagggaaaaagtgcacttta 12703597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 424
Target Start/End: Original strand, 34019117 - 34019250
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    ||||||||||| ||||||| ||||  |||||| || |||| | ||||||| | |||||| |||| ||||||  |||| || ||||||||||||||||| |    
T  34019117 tcaaaattgaccaaaaggaccaaagatgcaaatgagctaaattttaggggaccaaaattgtagtgtttgtacctagggggtcaaaattgcaagtttttga 34019216  T
Q  390 aagttagggtggaaaagtgcactttaacctaaaat 424  Q
    |||||| || |||||| || |||||| ||||||||    
T  34019217 aagttaagg-ggaaaaatgtactttaccctaaaat 34019250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 51037665 - 51037539
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  |||||||| ||  | ||||||||  |||||||||||||||| |||||| ||||||||||   |||  || ||||||||||| |||||     
T  51037665 gtcaaaattgttaaaaaggaccactactgcaaaggggctaattcttagggggctaaaattgtagtttttgttcatagagggtcaaaattgcaactttttg 51037566  T
Q  389 aaagttagggtggaaaagtgcacttta 415  Q
    ||||||| ||  |||||||||||||||    
T  51037565 aaagttaagggagaaaagtgcacttta 51037539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 46721177 - 46721318
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||| | ||||| ||||  ||||||||  |||| ||||||||| | |||||| |||||||||||  |||| ||  |||    
T  46721177 tcagcgttgacttggtcaaaattgaccagaaggaccaaatatgcaaaggggctaaatcttaggggactaaaattgtagtttttgtacatagggggttaaa 46721276  T
Q  375 attgcaagttttttaaagttagggtg-gaaaagtgcacttta 415  Q
    || |||| ||||| |||||||||| | |||||||||||||||    
T  46721277 atcgcaactttttaaaagttagggggagaaaagtgcacttta 46721318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 47615592 - 47615653
Alignment:
Q  362 ttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaaa 422  Q
    ||||| |||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||    
T  47615592 ttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctaaa 47615653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 415
Target Start/End: Complemental strand, 46720096 - 46719944
Alignment:
Q  265 tggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtattt 363  Q
    |||||||||| ||||| ||||||   ||||||||||| ||||||| ||||  |||||| |  |||| |||||| || | |||||| |||||||| ||  |    
T  46720096 tggcatgccattcagcgttgacttgatcaaaattgaccaaaaggaccaaatatgcaaatgggctaaatcttagaggactaaaattgtagtttttatacat 46719997  T
Q  364 aggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||| ||||||||| |||| ||||| |||||| |||| |||||| |||||||||    
T  46719996 agggggccaaaatcgcaactttttaaaagttaaggggggaaaaatgcacttta 46719944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 47609827 - 47609691
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggca-aaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||   ||||||| |||| |||||| ||  |||| ||||||||||   ||||| | ||||| ||| ||||| || |||||||||||||||||     
T  47609827 gtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttg 47609728  T
Q  389 aaagtta-gggtggaaaagtgcactttaacctaaaat 424  Q
    ||||||| ||| ||||||||||| |||| ||||||||    
T  47609727 aaagttagggggggaaaagtgcattttagcctaaaat 47609691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 47614316 - 47614188
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||| || ||||| | ||||  |||||||   |||| ||||||||||| |||||| | |||||  || ||||| ||||||||||||||||||||    
T  47614316 agtcaaaattaaccaaaagcaccaaagatgcaaagaggctaaatcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagttttt 47614217  T
Q  388 taaagttag-ggtggaaaagtgcacttta 415  Q
     |||||||| || | ||||||||||||||    
T  47614216 gaaagttagaggggaaaaagtgcacttta 47614188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 52840575 - 52840702
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||| || |||| ||| ||| |||||| ||  |||| |||||||||| ||||||| | |||||  || |||||  |||||||||||||||||||     
T  52840575 gtcaaaattaaccaaaatgataaaatttgcaatggggctaaatcttagggggacaaaattgttgttttgataattagggagccaaaattgcaagtttttg 52840674  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||| ||||||| ||||||||    
T  52840675 aaagttaggggaggaaaagggcacttta 52840702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 535790 - 535880
Alignment:
Q  327 ctaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcacttta 415  Q
    |||| ||||||||||  ||||||||||||||  || ||| | | |||||||||||||||||| ||||||| |||||||||||| |||||||    
T  535790 ctaaatcttagggggtgaaaattatagttttaatacttaagggaccaaaattgcaagtttttgaaagttaggggtggaaaagtacacttta 535880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 4271570 - 4271464
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||||||||||| ||||||| |  |||| ||||| |  || |||||| |||||||| |||||| |||  ||||||| ||| |||||     
T  4271570 gtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaagatgctaaaattgtagtttttatatttaagagatcaaaattacaaatttttg 4271471  T
Q  389 aaagtta 395  Q
    |||||||    
T  4271470 aaagtta 4271464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 52104554 - 52104480
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacct 419  Q
    |||||||||||||||||||  |||||  |||||||| ||| ||||| |||||||||| ||||||||||| ||||||||    
T  52104554 caaaattatagtttttgtacatagga--ccaaaattacaactttttgaaagttaggg-ggaaaagtgcattttaacct 52104480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 6249738 - 6249633
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    |||||||||||  |||||||||||| |||||| |  ||||| ||||| |||  |||||| ||||||||||| ||| | |   |||||||||||||||| |    
T  6249738 gtcaaaattgatcaaaaggatcaaatttgcaatgagactaaatcttaagggataaaattgtagtttttgtacttaagggattaaaattgcaagtttttga 6249639  T
Q  390 aagtta 395  Q
    ||||||    
T  6249638 aagtta 6249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 413
Target Start/End: Complemental strand, 23769986 - 23769862
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    |||||||||||| ||||||| ||||  |||||| || | || ||||||||| ||||||| ||||||||| |  |||  |   |||||||||| || || |    
T  23769986 gtcaaaattgaccaaaaggaccaaagatgcaaatgagcgaaatcttaggggtcaaaattgtagtttttgcacatagaggattaaaattgcaacttgttga 23769887  T
Q  390 aagtt-agggtggaaaagtgcactt 413  Q
    ||||| |||||||||||||||||||    
T  23769886 aagttaagggtggaaaagtgcactt 23769862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 40426749 - 40426877
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaatt-gcaagttttt 387  Q
    ||||||||| || ||||||| ||||    ||||||| |||| || |||||||| |||||| || ||||||||| || | |||| ||||| |||| |||||    
T  40426749 gtcaaaattaaccaaaaggaccaaagacacaaaggagctaaatcatagggggccaaaattgtaatttttgtatataaggggccgaaatttgcaacttttt 40426848  T
Q  388 taaagtta-gggtggaaaagtgcacttta 415  Q
    |||||||| ||| ||||||||||||||||    
T  40426849 taaagttaaggggggaaaagtgcacttta 40426877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 10584012 - 10584102
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaa 381  Q
    |||||||||||| |||||| |||| ||||||||||  |||| ||||||||||| ||||| || ||||| |  ||||| ||||||||| ||||    
T  10584012 gtcaaaattgaccaaaagg-tcaatattgcaaaggggctaaatcttagggggccaaattttaattttttttattagggggccaaaatcgcaa 10584102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 420
Target Start/End: Original strand, 19986006 - 19986175
Alignment:
Q  255 attacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||| | |||||||||||  || ||||||||| ||||||||||||  ||| || ||||  ||||||||   ||| |||||| ||| ||||||| |||    
T  19986006 attacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccgaaatgaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtag 19986104  T
Q  353 tttttgtatttaggagg--ccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||||| ||  |||||||  |||||||||||||||||| ||| || || | |||||||||||||||| ||||    
T  19986105 tttttatacataggaggggccaaaattgcaagtttttgaaacttaagaggggaaaagtgcactttagccta 19986175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 22775826 - 22775783
Alignment:
Q  368 ggccaaaattgcaagttttttaaagttagggtggaaaagtgcac 411  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||    
T  22775826 ggccaaaattgcaactttttgaaagttaggggggaaaagtgcac 22775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 53901407 - 53901484
Alignment:
Q  337 gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    |||| ||| ||| ||||||||||| ||| |  | ||||||||||| ||||||||| |||||| ||||||||||||||||    
T  53901407 ggggccaacattgtagtttttgtacttaaggagtcaaaattgcaacttttttaaacttaggg-ggaaaagtgcacttta 53901484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 5001267 - 5001198
Alignment:
Q  352 gtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaaccta 420  Q
    ||||| ||| ||||| ||||||||||||||| |||| |||| || ||| |||||||||||||||| ||||    
T  5001267 gttttggtacttagggggccaaaattgcaagattttgaaagataggggaggaaaagtgcactttagccta 5001198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 424
Target Start/End: Complemental strand, 8876037 - 8875900
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||    |||| ||||||||||| |||||| |||||||||||  || | ||| |||||||||  |||||    
T  8876037 agtcaaaattgactaaaaggaccaaatatgcaaattggctaaatcttagggggccaaaattgtagtttttgtacataaggggctaaaattgcagcttttt 8875938  T
Q  388 taaagttagggtg-gaaaagtgcactttaacctaaaat 424  Q
      || ||| || | ||||||||||||||| ||||||||    
T  8875937 cgaacttaaggggtgaaaagtgcactttagcctaaaat 8875900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 424
Target Start/End: Original strand, 23770378 - 23770514
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||| ||||| |||||||  |||  ||||||||   ||| ||||||||||| |||||| |||||||||||  || | | ||||||||| || ||||||    
T  23770378 gtcaaagttgaccaaaaggactaaagatgcaaaggggttaaatcttagggggctaaaattgtagtttttgtacataagggaccaaaattgtaactttttt 23770477  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaaaat 424  Q
    ||| || ||||  ||||| |||||||||||| |||||    
T  23770478 aaaattaaggggagaaaattgcactttaaccaaaaat 23770514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 28262243 - 28262191
Alignment:
Q  368 ggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    ||||||||| ||||  |||| |||||||||| |||||||||||||||| ||||    
T  28262243 ggccaaaatcgcaacgttttgaaagttaggggggaaaagtgcactttagccta 28262191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 290 - 424
Target Start/End: Original strand, 19750546 - 19750681
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||| |||| |||||||||||| |||||| ||  |||| ||||||||||  |||||| ||||||||||| ||||| ||||||||||||||||||||     
T  19750546 gtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagttttta 19750645  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaat 424  Q
    |||||||||| ||||||||||||||||  |||||||    
T  19750646 aaagttaggggggaaaagtgcactttagtctaaaat 19750681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 19789260 - 19789125
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||| |||| |||||||||||| |||||| ||  |||| ||||||||||  |||||| ||||||||||| ||||| ||||||||||||||||||||     
T  19789260 gtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagttttta 19789161  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaat 424  Q
    |||||||||| ||||||||||||||||  |||||||    
T  19789160 aaagttaggggggaaaagtgcactttagtctaaaat 19789125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 49307985 - 49308129
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaa 375  Q
    ||||||||||||  ||||||||||||  |||||| ||||  |||  |||  | || || |||||||||||||| ||||||||||| ||||| ||||||||    
T  49307985 tcagcattgacttggtcaaaattgacccaaaggaccaaagatgcgcaggggcaaaatcatagggggcaaaattgtagtttttgtacttagggggccaaaa 49308084  T
Q  376 ttgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||    
T  49308085 ttgcaagtttttgaaagttaggggggaaaagtgcactttagccta 49308129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 290 - 427
Target Start/End: Complemental strand, 1963326 - 1963187
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  |||||||| ||  ||||||||||  |||||||||||||||| |||||| |||||||||||  ||||||||||||||||||| |||||     
T  1963326 gtcaaaattgctaaaaaggaccactattgcaaaggggctaattcttagggggctaaaattgtagtttttgtacataggaggccaaaattgcaactttttg 1963227  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaaaatttt 427  Q
    |||||| |||| |||||||||||||||| |||||| ||||    
T  1963226 aaagttaaggggggaaaagtgcactttagcctaaactttt 1963187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 8758809 - 8758939
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    ||||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |||||| |||||| |||| ||||| |||||||||||||||||||| |    
T  8758809 tcaaaattgaccaaaaggattaaaattgcaatggagctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttga 8758908  T
Q  390 aagtt-agggtggaaaagtgcactttaacct 419  Q
    ||||| |||| ||||||||||| ||||||||    
T  8758909 aagttaaggggggaaaagtgcattttaacct 8758939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 413
Target Start/End: Complemental strand, 31599919 - 31599794
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| |||||||||||||| |||||||||  |||| ||||||||| | |||||| ||||||||||| ||||| || |||||||||||||||||     
T  31599919 gtcaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 31599820  T
Q  389 aaagttagggtgg-aaaagtgcactt 413  Q
    |||||||||| || ||||||||||||    
T  31599819 aaagttaggggggaaaaagtgcactt 31599794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 290 - 425
Target Start/End: Original strand, 37728536 - 37728672
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||||||||||  ||||||| | |||| |||||  ||| ||||||| |||||||||||  ||||||||||||||||||| |||||     
T  37728536 gtcaaaattgactaaaaggatcaaagatgcaaagaagctaaatcttaaagggtcaaaattgtagtttttgtacataggaggccaaaattgcaacttttta 37728635  T
Q  389 aaagttagggtggaaaagtgcactttaacctaaaatt 425  Q
    |||||||||  | |||| |||||||||||||||||||    
T  37728636 aaagttaggaggaaaaaatgcactttaacctaaaatt 37728672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 31600956 - 31601083
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||||||||||||||||| ||||||| |  |||| ||||| |||| ||||||| ||||||||||| ||||| || |||||||||||||||||     
T  31600956 gtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaaggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 31601055  T
Q  389 aaagttag-ggtggaaaagtgcacttta 415  Q
    |||||||| || | ||||||||||||||    
T  31601056 aaagttagaggggaaaaagtgcacttta 31601083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 26421597 - 26421725
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaa 391  Q
    ||||||||| |||| ||||||| |||||| ||  |||| ||||| |||| ||||||| ||||||||||| |||||||| ||||||||||||||||| |||    
T  26421597 aaaattgactaaaatgatcaaatttgcaatggg-ctaaatcttaaggggtcaaaattgtagtttttgtacttaggaggtcaaaattgcaagtttttgaaa 26421695  T
Q  392 gttagggtggaaaagtgcactttaacctaa 421  Q
    ||||| | |||||||||||||||| |||||    
T  26421696 gttagaggggaaaagtgcactttagcctaa 26421725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 1290143 - 1290302
Alignment:
Q  265 tggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatt 362  Q
    |||||||||||| || | ||||||  |||||||||||| ||||||| ||||  ||||||||   ||| ||||||||||| |||||| ||||||||||| |    
T  1290143 tggcatgccacttaggcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagggggctaaaattgtagtttttgtact 1290242  T
Q  363 taggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaacctaa 421  Q
    |||  ||||||||||||||| |||| |||||| |||| |||||||||||||||| |||||    
T  1290243 tagagggccaaaattgcaagattttgaaagttaaggggggaaaagtgcactttagcctaa 1290302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 1835072 - 1835205
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| | ||||||| ||||  ||||||||  |||| |||||||||| ||||||| |||||||  || ||||| || |||||||||||||||||    
T  1835072 agtcaaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagttttt 1835171  T
Q  388 taaagttaggg-tggaaaagtgcactttaaccta 420  Q
     |||||||||| ||||||||||||||||| ||||    
T  1835172 gaaagttagggatggaaaagtgcactttagccta 1835205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 423
Target Start/End: Complemental strand, 49306939 - 49306770
Alignment:
Q  255 attacacgcatggcatg-ccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagt 353  Q
    ||||||||| ||||||| ||| ||| ||||||||  ||||||||||| |||||||| ||||  ||||||   ||||| || ||  |||||||||| ||||    
T  49306939 attacacgcgtggcatgtccaatcaacattgactttgtcaaaattgataaaaaggaccaaagatgcaaaatgactaaatcatattgggcaaaattgtagt 49306840  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaaaa 423  Q
    ||||||| |||   |||||||||||||||||||| |||||| |||   |||||||||||||| |||||||    
T  49306839 ttttgtacttaaatggccaaaattgcaagtttttgaaagttgggggaaaaaagtgcactttagcctaaaa 49306770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 52491578 - 52491710
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||||||| ||| |||||| ||  |||| | ||||||||| |||||| |||||| |||||||||  | ||||||||||||||||||     
T  52491578 gtcaaaattgaccaaaaggattaaagttgcaatggggctaaattttagggggccaaaattgtagtttctgtatttagaggaccaaaattgcaagtttttg 52491677  T
Q  389 aaagtt-agggtggaaaagtgcactttaaccta 420  Q
    |||||| ||||||||||||| ||||||| ||||    
T  52491678 aaagttaagggtggaaaagtacactttagccta 52491710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 415
Target Start/End: Complemental strand, 1834286 - 1834122
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg--caaaattata 351  Q
    ||||||| | ||||||||||  |||||||||| |  |||||||||||| ||||||| ||||  |||||| |  |||| ||||||||||  ||||||| ||    
T  1834286 attacacacgtggcatgccaaatcagcattgatttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggggccaaaattgta 1834187  T
Q  352 gtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    |||||| ||  |||| || |||||||| ||||||||||||||||| || ||||||||||||||||    
T  1834186 gtttttatacatagggggtcaaaattgtaagttttttaaagttagagggggaaaagtgcacttta 1834122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 5526083 - 5526228
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| ||||||||||| ||  |||| |||||||||| | ||||| | |||||  || ||||| |||||||    
T  5526083 tcagcgttgactaggtcaaaattggtcaaaaggaccaaaattgcaatggggctaaatcttaggggggctaaattgtggttttgttacttagggggccaaa 5526182  T
Q  375 attgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    ||||||||||||| |||||||| | |||||||||||||||| ||||    
T  5526183 attgcaagtttttgaaagttagaggggaaaagtgcactttagccta 5526228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 428
Target Start/End: Original strand, 13509304 - 13509469
Alignment:
Q  265 tggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatt 362  Q
    ||||||||||| || || ||||||  |||||||||| | ||||||| ||||  ||||||||  |||| |||||||||  ||||||| |||||||  || |    
T  13509304 tggcatgccacacatgcgttgacttggtcaaaattggccaaaaggagcaaaggtgcaaaggggctaaatcttaggggatcaaaattgtagttttcatact 13509403  T
Q  363 taggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaaaattttc 428  Q
    | || |||||||||||||| ||||| |||||||||| |||||||| ||||||| |||||| |||||    
T  13509404 tggggggccaaaattgcaattttttaaaagttaggggggaaaagtacactttagcctaaatttttc 13509469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 290 - 421
Target Start/End: Complemental strand, 8757804 - 8757672
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||||||| |||||||||| ||  |||| ||||| ||| | |||||| |||||| |||| ||||| ||| ||||||| ||||||||     
T  8757804 gtcaaaattgaccaaaaggattaaaattgcaatggggctaaatcttaagggtccaaaattgtagtttctgtacttagggggctaaaattgtaagtttttg 8757705  T
Q  389 aaagttagggtggaaaagtgcactttaacctaa 421  Q
    ||||||| || | |||||||||||||| |||||    
T  8757704 aaagttaaggggaaaaagtgcactttagcctaa 8757672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 17383123 - 17382991
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||||||  ||||||  |  ||||||||||   |||||||| |||||| |||||| ||||||||||| ||| | | ||||||||||||||||||    
T  17383123 agtcaaaattgacctaaaggactactattgcaaaggggataattcttggggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagttttt 17383024  T
Q  388 taaagttagggtggaaaagtgcactttaaccta 420  Q
     ||||||||||  ||||||||||||||| ||||    
T  17383023 gaaagttaggggagaaaagtgcactttagccta 17382991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 17388181 - 17388313
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||||||  ||||||  |  |||| |||||  ||||||||| |||||| |||||| |||||| |||| ||| | | ||||||||||||||||||    
T  17388181 agtcaaaattgacctaaaggactactattgtaaaggggctaattcttggggggccaaaattgtagtttatgtacttaagggaccaaaattgcaagttttt 17388280  T
Q  388 taaagttagggtggaaaagtgcactttaaccta 420  Q
     |||||||||| |||||||||||||||| ||||    
T  17388281 gaaagttaggggggaaaagtgcactttagccta 17388313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 21539069 - 21539173
Alignment:
Q  317 tgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttt 414  Q
    ||||||||| |||| |||||||||| ||||||| ||||||||  | |||||||||||||||||||||||||| ||| || ||||||||||||||  ||||    
T  21539069 tgcaaaggagctaaatcttagggggtcaaaattgtagtttttacacttaggaggccaaaattgcaagtttttaaaaattaagggtggaaaagtgtgcttt 21539168  T
Q  415 aacct 419  Q
    |||||    
T  21539169 aacct 21539173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 421
Target Start/End: Original strand, 25685779 - 25685926
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| |||||||    
T  25685779 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttagggggtctaaattgtggttttggtacttagggggccaaa 25685878  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaa 421  Q
    ||||||||||||| |||||||| || |||||||||||||||| |||||    
T  25685879 attgcaagtttttgaaagttagagggggaaaagtgcactttagcctaa 25685926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 10471345 - 10471486
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| |||||||    
T  10471345 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaa 10471444  T
Q  375 attgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  10471445 attgcaagtttttgaaagttaaggggggaaaagtgcacttta 10471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 35934482 - 35934347
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaatt 377  Q
    |||||||||| |||||||||||| ||||| || ||| |||||| ||  |||| |||| ||||| |||||||||| ||| | || ||||| | ||||||||    
T  35934482 gcattgactg-gtcaaaattgaccaaaagaattaaagttgcaatggggctaaatcttaaggggccaaaattataatttctttacttaggggaccaaaatt 35934384  T
Q  378 gcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
     ||||||||| |||||||||| ||||||||||||||||    
T  35934383 acaagtttttgaaagttaggg-ggaaaagtgcacttta 35934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 423
Target Start/End: Original strand, 55603501 - 55603636
Alignment:
Q  288 gagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||||| ||||||  |  |||||||| || || |||||| |||| ||||||  |||||||||||   ||| |   ||||||||||||||||    
T  55603501 gagtcaaaattgacataaaggactactattgcaaatgagcttattcttgggggccaaaatagtagtttttgtacacaggggattaaaattgcaagttttt 55603600  T
Q  388 taaagttagggtggaaaagtgcactttaacctaaaa 423  Q
     ||||||| || | ||||||||||||||||||||||    
T  55603601 gaaagttaaggggaaaaagtgcactttaacctaaaa 55603636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 423
Target Start/End: Complemental strand, 8155830 - 8155733
Alignment:
Q  327 ctaattcttagggggc-aaaattatagtttttgtatttaggag-gccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaaaa 423  Q
    |||| ||||||||||| |||||| ||||||||| | ||||| | || |||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  8155830 ctaaatcttagggggccaaaattgtagtttttgaacttaggggagctaaaattgcaagtttttgaaagttaggg-ggaaaagtgcactttaacataaaa 8155733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 12129706 - 12129625
Alignment:
Q  336 agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaa 416  Q
    ||||| ||||||| ||||||||||| ||| | |||||||||||||||||||| |||||| || | |||||||||||||||||    
T  12129706 aggggtcaaaattgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtgcactttaa 12129625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 25685078 - 25684937
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||  || ||||    
T  25685078 tcagcgttgacttggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagagggtcaaa 25684979  T
Q  375 attgcaagttttttaaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||    
T  25684978 attgcaagtttttgaaagttagggggggaaaagtgcacttta 25684937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 5525503 - 5525363
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| || ||||    
T  5525503 tcagcgttgacttggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaa 5525404  T
Q  375 attgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||||||||| |||||||||| |||||| || ||||||    
T  5525403 attgcaagtttttgaaagttaggggggaaaaatgtacttta 5525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 421
Target Start/End: Complemental strand, 33296389 - 33296221
Alignment:
Q  255 attacacgcatggcatg-ccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    |||||| || ||||||| ||| |||||||||| |  || ||||||||| |||| |||||||  |||||| || |||| |  |||||| | ||||||||||    
T  33296389 attacatgcgtggcatgtccaatcagcattgatttggttaaaattgaccaaaatgatcaaagatgcaaatgagctaaattataggggaccaaaattatag 33296290  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaa 421  Q
    ||||| || ||||||| ||||||||  |||||||| ||| ||||||   |||| |||||||||||||||    
T  33296289 tttttatacttaggagaccaaaattataagtttttgaaaattagggaaaaaaaatgcactttaacctaa 33296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 416
Target Start/End: Original strand, 35935504 - 35935632
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| | |||||||| ||| |||||| |   |||| |||||||||| ||||||| |||||| |||| ||||| ||| |||||||||| |||||     
T  35935504 gtcaaaattggccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttatgtacttagggggctaaaattgcaaattttta 35935603  T
Q  389 aaagtt-agggtggaaaagtgcactttaa 416  Q
    |||||| |||| || ||||||||||||||    
T  35935604 aaagttaagggggggaaagtgcactttaa 35935632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 421
Target Start/End: Complemental strand, 48780365 - 48780245
Alignment:
Q  303 aaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtg 400  Q
    ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| || ||||||||||||||||| ||||||| ||| |    
T  48780365 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttaaaagttagggggg 48780266  T
Q  401 gaaaagtgcactttaacctaa 421  Q
    ||||||||||||||| |||||    
T  48780265 gaaaagtgcactttagcctaa 48780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 415
Target Start/End: Original strand, 1964376 - 1964539
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | ||||||||||  ||||| ||||||  ||||||||||  |||||||| ||  || |||||||   ||||||||| ||| | |||||| |||    
T  1964376 attacacacgtggcatgccaaatcagcgttgacttggtcaaaattgctaaaaaggaccactatcgcaaaggggataattcttaagggaccaaaattgtag 1964475  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    |||||||   |||| ||||||||||| || ||||| |||||| |||||||||||||||||||||    
T  1964476 tttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcacttta 1964539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 415
Target Start/End: Complemental strand, 14869028 - 14868893
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgc 379  Q
    |||||||||||||||||| ||  |||||||  |||   |||| ||  |||||||||||||||  ||||| | |||||  || ||||  ||||||||||||    
T  14869028 cattgactgagtcaaaatagagcaaaaggacgaaataagcaatggggctaattcttagggggggaaattgtggttttgatacttagcgggccaaaattgc 14868929  T
Q  380 aagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||| |||| |||| ||||| ||||||||||||||||    
T  14868928 aagattttgaaagataggggggaaaagtgcacttta 14868893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 415
Target Start/End: Original strand, 14876906 - 14877041
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgc 379  Q
    |||||||||||||||||| ||  |||||||  |||   |||| ||  |||||||||||||||  ||||| | |||||  || ||||  ||||||||||||    
T  14876906 cattgactgagtcaaaatagagcaaaaggacgaaataagcaatggggctaattcttagggggggaaattgtggttttgatacttagcgggccaaaattgc 14877005  T
Q  380 aagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||| |||| |||| ||||| ||||||||||||||||    
T  14877006 aagattttgaaagataggggggaaaagtgcacttta 14877041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 423
Target Start/End: Complemental strand, 21178127 - 21177992
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| |||||| ||||||| ||||||| |  |||| | |||||||| ||||||| ||||||||||   |||| |  ||||||||||| ||| |    
T  21178127 agtcaaaattggcaaaaatgatcaaagttgcaaaagggctaaattttagggggtcaaaattgtagtttttgttcataggggatcaaaattgcaactttat 21178028  T
Q  388 taaagttagggtggaaaagtgcactttaacctaaaa 423  Q
     |||||||||| || ||||| ||||||| |||||||    
T  21178027 gaaagttagggggggaaagtacactttagcctaaaa 21177992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 10470690 - 10470549
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctta-gggggcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||  |||| ||||| |||||| ||||| |  |||| ||| ||||  || ||||    
T  10470690 tcagcgttgacttggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtgattttggtacttagagggtcaaa 10470591  T
Q  375 attgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  10470590 attgcaagtttttgaaagttaaggggggaaaagtgcacttta 10470549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 420
Target Start/End: Complemental strand, 13386160 - 13386012
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaa--aattatagtttttgtatttaggaggccaa 373  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| |   |||| ||||||||||  |  |||| | ||||| ||| ||||| ||||||    
T  13386160 tcagcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatgaggctaaatcttagggggggataaattgtggttttggtacttagggggccaa 13386061  T
Q  374 aattgcaagtttttt-aaagttag-ggtggaaaagtgcactttaaccta 420  Q
    ||||||||||||||| |||||||| || |||||||||||||||| ||||    
T  13386060 aattgcaagttttttgaaagttagagggggaaaagtgcactttagccta 13386012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 33310113 - 33310168
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagg 397  Q
    |||||||||||||||||||||||||  || |||||| ||||||||| |||||||||    
T  33310113 caaaattatagtttttgtatttagggagctaaaattacaagtttttaaaagttagg 33310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 419
Target Start/End: Original strand, 54110643 - 54110727
Alignment:
Q  334 ttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacct 419  Q
    ||||||||| ||||||||| ||||||||  | ||||| ||||||||||| ||||||||||||||| |  |||||| |||||||||||    
T  54110643 ttagggggctaaaattataatttttgtacattggaggtcaaaattgcaaattttttaaagttaggat--aaaagtacactttaacct 54110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 13386489 - 13386631
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||  |||||||||| | ||||| | ||||| ||| ||| | || ||||    
T  13386489 tcagcgttgacttggtcaaaattggtcaaaaggaccaaagttgcaatggggctagatcttaggggggctaaattgtggttttggtacttatggggtcaaa 13386588  T
Q  375 attgcaagttttttaaagttagggtgg--aaaagtgcacttta 415  Q
    ||||||||||||| |||||||||| ||  ||||||||||||||    
T  13386589 attgcaagtttttgaaagttagggggggaaaaagtgcacttta 13386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 422
Target Start/End: Original strand, 10448196 - 10448365
Alignment:
Q  255 attacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||| | |||||||||||  || ||||||||| |||||||||| | ||||||| ||||  ||||||||  |||  |||||| |||| |||||| |||    
T  10448196 attacacacgtggcatgccacgtaggcattgactg-gtcaaaattggccaaaaggaccaaagatgcaaaggggctatatcttagagggccaaaattgtag 10448294  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaa 422  Q
    ||||||||  |||| ||| ||||| |||| ||||| ||| ||| ||| ||  |||||||||||| ||||||    
T  10448295 tttttgtacatagggggctaaaatcgcaactttttgaaacttaggggaggggaagtgcactttagcctaaa 10448365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 50909643 - 50909771
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg--caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    |||||||||||  ||||||| ||||  ||||||||  |||| ||||| ||||  ||||||| |||||||| ||  ||||  | |||||| |||| |||||    
T  50909643 gtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaatcttaagggggtcaaaattgtagtttttatacatagggagtcaaaatcgcaacttttt 50909742  T
Q  388 taaagttagggtgg-aaaagtgcacttta 415  Q
     ||| ||||||||| ||||||||||||||    
T  50909743 aaaacttagggtggaaaaagtgcacttta 50909771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 2412855 - 2412935
Alignment:
Q  256 ttacacgcatggcatgccactcagca-ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt 335  Q
    |||||||| ||||||||||| |||   |||| | ||||||||||||| |||||||||||| |||||| ||| |||| ||||    
T  2412855 ttacacgcgtggcatgccacgcaggtgttgattaagtcaaaattgactaaaaggatcaaatttgcaatggagctaaatctt 2412935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 33997839 - 33997883
Alignment:
Q  304 aaaggatcaaaattgcaaaggaactaattcttagggggcaaaatt 348  Q
    ||||||||| |||||||||||  |||| |||||||||||||||||    
T  33997839 aaaggatcacaattgcaaaggggctaaatcttagggggcaaaatt 33997883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 424
Target Start/End: Original strand, 3282 - 3414
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaa 391  Q
    ||||||| |||||||||||||| |||||||||  |||| ||||||||| | ||||||||||||||||||  || | || |||||||| |||||||| |||    
T  3282 aaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattatagtttttgtacctatggggtcaaaattgtaagtttttgaaa 3381  T
Q  392 gttagggtggaaaagtgcactttaacctaaaat 424  Q
    || |||| |||||||||||||||| ||||||||    
T  3382 gtaaggggggaaaagtgcactttagcctaaaat 3414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 18371555 - 18371427
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||||||||  |||||| |  |||| ||||||||||| |||||| ||||||||||| ||| | ||||||||||||||||||||    
T  18371555 agtcaaaattgaccaaaaggatcaaagatgcaaatgtgctaaatcttagggggccaaaattgtagtttttgtacttaaggggccaaaattgcaagttttt 18371456  T
Q  388 taaagttagg-gtggaaaagtgcacttta 415  Q
     ||||||||| | ||||||||||||||||    
T  18371455 gaaagttaggaggggaaaagtgcacttta 18371427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 256 - 415
Target Start/End: Complemental strand, 31659788 - 31659625
Alignment:
Q  256 ttacacgcatggcatgccactca-gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagt 353  Q
    |||||| | ||||||||||| || || ||||||  |||||||||||| |||||||||||| |||||| ||  |||| ||||||||||| |||||| ||||    
T  31659788 ttacacacgtggcatgccacgcatgcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagt 31659689  T
Q  354 ttttgtatttaggaggccaaaattgcaagttttttaaagttagggtgg--aaaagtgcacttta 415  Q
    ||||||| ||||| || |||||||| |||||||| |||||||||| ||  ||||||||||||||    
T  31659688 ttttgtacttagggggtcaaaattgtaagtttttgaaagttagggggggtaaaagtgcacttta 31659625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 42886257 - 42886389
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||| |||||||  |||||| |  |||| ||||||||||| |||||| ||||||||||||||||| || ||||||||||| |||||     
T  42886257 gtcaaaattgaccaaaatgatcaaagatgcaaatgggctaaatcttagggggctaaaattgtagtttttgtatttagggggtcaaaattgcaaatttttg 42886356  T
Q  389 aaagttagg-gtggaaaagtgcactttaaccta 420  Q
    ||||||||| |  ||||||||||||||||||||    
T  42886357 aaagttaggaggagaaaagtgcactttaaccta 42886389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 426
Target Start/End: Complemental strand, 127479 - 127329
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaa 375  Q
    ||||| ||||||  ||||||||||   ||||||| |||| ||||||  |  |||| ||||||||||| ||||| | ||||| ||| ||||| | ||||||    
T  127479 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaattgggctaaatcttagggggctaaattgtggttttggtacttaggggaccaaaa 127380  T
Q  376 ttgcaagttttttaaagttagggtggaaaagtgcactttaacctaaaattt 426  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||| ||||    
T  127379 ttgcaagtttttgaaagttaggggggaaaagtgcactttagcctaagattt 127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 289 - 405
Target Start/End: Original strand, 18372427 - 18372544
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  | ||||||  |||| ||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  18372427 agtcaaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagttttt 18372526  T
Q  388 taaagttagggtggaaaa 405  Q
     ||| |||||| ||||||    
T  18372527 gaaaattaggggggaaaa 18372544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 413
Target Start/End: Original strand, 14999091 - 14999249
Alignment:
Q  255 attacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    |||||||  |||||||||||| | ||||||||| | ||||||||||||  |||||| ||||  ||||||||  |||| |||||||| || |||||| |||    
T  14999091 attacacatatggcatgccacgtaagcattgaccg-gtcaaaattgacctaaaggaacaaagatgcaaaggggctaaatcttagggcgccaaaattgtag 14999189  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactt 413  Q
    |||||||||||||| || |||||||||||| |||| ||| |||||| ||||||||||||||    
T  14999190 tttttgtatttagggggtcaaaattgcaag-ttttgaaaattaggggggaaaagtgcactt 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 421
Target Start/End: Original strand, 3227551 - 3227698
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||  |||| ||||||||| || ||||| | ||||| ||| ||||| |||||||    
T  3227551 tcagcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtacttagggggccaaa 3227650  T
Q  375 attgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaa 421  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| |||||    
T  3227651 attgcaagtttttgaaagttagggggggaaaagtgcactttagcctaa 3227698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 22629617 - 22629518
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  ||||||||  |||| ||||||||||| |||||| ||||||||||| |||||||||||||||| |||||||||    
T  22629617 agtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttaggaggccaaaattacaagttttt 22629518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 421
Target Start/End: Original strand, 22630422 - 22630556
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| ||||  | |||||   || | ||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  22630422 agtcaaaattgaccaaaaggaccaaagatacaaagaggctgaatcttagggggctaaaattgtagtttttgtaattagggggccaaaattgcaagttttt 22630521  T
Q  388 taaagtta-gggtggaaaagtgcactttaacctaa 421  Q
     ||||||| ||  |||||||||||||||| |||||    
T  22630522 gaaagttatggagggaaaagtgcactttagcctaa 22630556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 31949759 - 31949905
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||  |||| ||||||||| || ||||| | ||||| ||||||||| |||||||    
T  31949759 tcagcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtatttagggggccaaa 31949858  T
Q  375 attgcaagttttttaaagtta-gggtggaaaagtgcactttaaccta 420  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||| ||||    
T  31949859 attgcaagtttttgaaagttagggggggaagagtgcactttagccta 31949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 7501812 - 7501956
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaatt 377  Q
    ||||||| | ||||||||||||| ||||||| ||||  ||||||||  |||  ||||| ||||| |||||| | |||||  || ||||| ||||||||||    
T  7501812 gcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctacatcttaaggggccaaaattgttgttttgatacttagggggccaaaatt 7501911  T
Q  378 gcaagttttttaaagttag-ggtggaaaagtgcactttaacctaa 421  Q
    |||||||||| |||||||| || |||||||||||||||| |||||    
T  7501912 gcaagtttttgaaagttagagggggaaaagtgcactttagcctaa 7501956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 276 - 422
Target Start/End: Complemental strand, 31949466 - 31949318
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  |||||||||||  ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| |||||||    
T  31949466 tcagcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaa 31949367  T
Q  375 attgcaagttttttaaagttaggg-tggaaaagtgcactttaacctaaa 422  Q
    ||||||||||||| ||| ||||||  |||||||||||||||| ||||||    
T  31949366 attgcaagtttttgaaaattagggagggaaaagtgcactttagcctaaa 31949318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 7500585 - 7500458
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||||||||  ||||||||  |||| ||||||||||| |||||| | |||| | || ||||  |  |||||||||||||||||    
T  7500585 agtcaaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaaattgtggtttctatacttagaggatcaaaattgcaagttttt 7500486  T
Q  388 taaagttagggtggaaaagtgcacttta 415  Q
     ||||||| || ||||||||||||||||    
T  7500485 gaaagttaagggggaaaagtgcacttta 7500458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 424
Target Start/End: Original strand, 11662523 - 11662658
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    |||||||||||| ||||||  |  ||||||||||  ||||||||| ||||| |||||||||||||||||||  |||   || |||||||||||||||| |    
T  11662523 tcaaaattgacataaaggactactattgcaaaggggctaattcttggggggccaaaattatagtttttgtacatagagagctaaaattgcaagtttttga 11662622  T
Q  390 aagtt-agggtggaaaagtgcactttaacctaaaat 424  Q
    ||||| |||| |||||| ||||||||||||| ||||    
T  11662623 aagttaaggggggaaaaatgcactttaaccttaaat 11662658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 395
Target Start/End: Complemental strand, 43899613 - 43899470
Alignment:
Q  253 ttattacacgcatggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttag-ggggcaaaattata 351  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||| | |||| |||||||  || ||| |  |||||| |||| | | ||||||| ||    
T  43899613 ttattacacgcgtggcatgccactcagctttgactaagtcaaaattggccaaaaagatcaaagatgtaaatgtgctaatttttagagagccaaaattgta 43899514  T
Q  352 gtttttgtatttaggaggccaaaattgcaagttttttaaagtta 395  Q
     ||||| ||||||| ||  ||||||||||||||||| |||||||    
T  43899513 atttttatatttagaagatcaaaattgcaagtttttgaaagtta 43899470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 21505542 - 21505414
Alignment:
Q  292 caaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaa 390  Q
    |||||||| | ||||||| ||||  ||||||||  |||| ||||| |||| ||||||| |||||||||||| | || ||||||||| |||| ||||| ||    
T  21505542 caaaattgtccaaaaggaccaaagatgcaaaggggctaaatcttatggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaa 21505443  T
Q  391 agttagggtggaaaagtgcactttaaccta 420  Q
    |||||||| |||||||||||||||| ||||    
T  21505442 agttaggg-ggaaaagtgcactttagccta 21505414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 3227251 - 3227111
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctta-gggggcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| ||||| |||||| ||||| | ||||| ||| ||||| |||||||    
T  3227251 tcagcgttgactaggtcaaaattgttcaaaaggaccaaagttgcaatggggctaaatcttaagggggctaaattgtggttttggtacttagggggccaaa 3227152  T
Q  375 attgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||||||||| ||| |||||| || |||||||||||||    
T  3227151 attgcaagtttttgaaaattagggggggaaagtgcacttta 3227111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 17782572 - 17782663
Alignment:
Q  337 gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaaaatttt 427  Q
    |||||| ||||| | ||||| ||| ||||| |||||||||||||||||||| |||||||| || |||||||||||||||| |||| ||||||    
T  17782572 gggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctataatttt 17782663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 47369864 - 47369802
Alignment:
Q  336 agggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg 398  Q
    ||||| ||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||    
T  47369864 aggggccaaaattatagtttttgtacttatgaggctaaaattgcaagtttttgaaagttaggg 47369802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 128558 - 128703
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||||||||||  ||||||||||   |||||| ||||| |||||| ||  || | |||||||||| | ||||| | ||||| ||| ||||| || ||||    
T  128558 tcagcattgactaggtcaaaattggttaaaagggtcaaagttgcaatggggctgaatcttaggggggctaaattgtggttttggtacttagggggtcaaa 128657  T
Q  375 attgcaagttttttaaagttagggt-ggaaaagtgcactttaacct 419  Q
    ||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  128658 attgcaaatttttgaaagttatggtgggaaaagtgcactttaacct 128703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 420
Target Start/End: Complemental strand, 11658517 - 11658377
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctt-agggggcaaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||| ||||||||||||||| ||||||  |  ||| ||||||  ||||||||| ||||  ||||||| |||||||||||  |||| ||| |||||||||    
T  11658517 ttgaccgagtcaaaattgacataaaggactactattacaaaggggctaattcttgagggaccaaaattgtagtttttgtacatagggggctaaaattgca 11658418  T
Q  381 agttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
     |||||| |||||| |||| ||||||||||| |||| ||||    
T  11658417 tgtttttgaaagttaaggggggaaaagtgcaatttagccta 11658377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 34174017 - 34174086
Alignment:
Q  352 gtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaa 421  Q
    ||||| ||| ||||| ||||||||||||||| |||| |||| ||||| |||||||||||||||| |||||    
T  34174017 gttttggtacttagggggccaaaattgcaagattttgaaagataggggggaaaagtgcactttagcctaa 34174086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 397
Target Start/End: Complemental strand, 46482772 - 46482619
Alignment:
Q  246 aattagtttattacacgcatggcatgccactcag-cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gca 343  Q
    ||||| || ||||||| |||||| ||||||  || |||||| | ||||||||||||| |||||||| |||| |||||||||  ||| |||||||||   |    
T  46482772 aattaattaattacacacatggcttgccacgtaggcattgaataagtcaaaattgaccaaaaggataaaaaatgcaaaggagataaatcttaggggatta 46482673  T
Q  344 aaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagg 397  Q
    |||||||||||||||||  |||| || |||| || ||| ||||| ||| |||||    
T  46482672 aaattatagtttttgtacatagggggtcaaatttacaaatttttgaaaattagg 46482619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 47525324 - 47525465
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | |||||  || ||||| ||| |||    
T  47525324 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttgatacttagggggctaaa 47525423  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  47525424 attgcaagtttttgaaagttagagggggaaaagtgcacttta 47525465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 769543 - 769416
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||   ||||||||||||  |||||| |   ||||||| |||| || ||||||||| |||||||| |||||| | |||||||||||||||||     
T  769543 gtcaaaattgggcaaaaggatcaaagatgcaaatgggttaattctaagggagccaaaattataatttttgtacttaggatgtcaaaattgcaagtttttg 769444  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||| |||  ||||||||| |||||||||    
T  769443 aaaattacaggtggaaaattgcacttta 769416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 17781791 - 17781664
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggca-aaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||   ||||||| |||| |||||| ||  |||| ||||||||||   ||||| | ||||| ||| ||||| || |||||||||||||||||     
T  17781791 gtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttg 17781692  T
Q  389 aaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||| ||||||||||||||||    
T  17781691 aaagttagggggggaaaagtgcacttta 17781664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 20163588 - 20163654
Alignment:
Q  350 tagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcacttta 415  Q
    |||||||||||  ||||  ||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  20163588 tagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggggtggagaagtgcacttta 20163654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 419
Target Start/End: Original strand, 43900463 - 43900589
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaag 392  Q
    ||||||||  ||||||||||||  |||||| ||  ||| | || |||||||||| | |||||||| ||||||||   |||||||| ||| ||||| ||||    
T  43900463 aaaattgatcaaaaggatcaaagatgcaaatgagataaatttttgggggcaaaactgtagtttttatatttagggaaccaaaattacaaatttttaaaag 43900562  T
Q  393 ttagggtggaaaagtgcactttaacct 419  Q
    ||||    |||||||||||||||||||    
T  43900563 ttagaagagaaaagtgcactttaacct 43900589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 48934927 - 48935001
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcacttta 415  Q
    ||||||| ||||||||||| ||||  || ||||||| ||||||||| ||||||| |||||||||| |||||||||    
T  48934927 caaaattttagtttttgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaaatgcacttta 48935001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 47524592 - 47524532
Alignment:
Q  352 gtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcac 411  Q
    ||||| ||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||    
T  47524592 gttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcac 47524532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 46483561 - 46483611
Alignment:
Q  371 caaaattgcaagttttttaaagttagggtggaaaagtgcactttaacctaa 421  Q
    ||||||| ||||||||| |||||||  | ||||||||||||||||||||||    
T  46483561 caaaattacaagtttttaaaagttaaaggggaaaagtgcactttaacctaa 46483611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 34352810 - 34352895
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaaaattt 426  Q
    |||||||||||||| |||| ||| | | ||||||| | |||||||| ||| |||| |||| |||||||||||||| ||| ||||||    
T  34352810 caaaattatagtttatgtacttaagggaccaaaatagaaagtttttgaaaattagaggtgaaaaagtgcactttagccttaaattt 34352895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 8521145 - 8521105
Alignment:
Q  278 agcattgactgagtcaaaattgacaaaaaggatcaaaattg 318  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  8521145 agcattgactgaatcaaaattgacaaaaatgatcaatattg 8521105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 43899760 - 43899724
Alignment:
Q  107 tcaattgaaatttttgtgctttgttgttatgtgatgt 143  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  43899760 tcaattggaatttttgtgctttgttgttatgttatgt 43899724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 415
Target Start/End: Original strand, 61394 - 61557
Alignment:
Q  255 attacacgcatggcatg-ccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatag 352  Q
    ||||||||  ||||||| ||| ||||||||||||  |||||||||||| ||||||| ||||  |||||| |  |||| || |||||||| ||||||||||    
T  61394 attacacgtgtggcatgtccagtcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaagggctaaatcatagggggccaaaattatag 61493  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    |||||||| ||||| ||| |||||||||||||||| ||| || |||| ||||||||||||||||    
T  61494 tttttgtacttagggggctaaaattgcaagtttttgaaaattaagggaggaaaagtgcacttta 61557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 415
Target Start/End: Complemental strand, 60256 - 60093
Alignment:
Q  255 attacacgcatggcatgc-cactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatag 352  Q
    ||||||||| |||||||  || ||||||||||||  |||||||||||| |||| || ||||  ||||||||  |||| || ||||||| ||||||| |||    
T  60256 attacacgcgtggcatgttcaatcagcattgacttggtcaaaattgaccaaaaagaccaaagatgcaaaggggctaaatcatagggggtcaaaattgtag 60157  T
Q  353 tttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    ||||| ||  |||| || ||||||||||||||||| |||||||| || ||||||||||||||||    
T  60156 tttttatacatagggggtcaaaattgcaagtttttaaaagttagaggaggaaaagtgcacttta 60093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 276 - 420
Target Start/End: Complemental strand, 1583 - 1437
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||||||||||  |||||||||||| ||||||| ||||  |||||| |  |||| |||||||||| |||||||||||||||| ||  |||| || ||||    
T  1583 tcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagggggtcaaaattatagtttttatacatagggggtcaaa 1484  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcactttaaccta 420  Q
    |||||||||||||||||||||| || |||||||| ||||||| ||||    
T  1483 attgcaagttttttaaagttagagggggaaaagtacactttagccta 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 257 - 420
Target Start/End: Original strand, 49370 - 49536
Alignment:
Q  257 tacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtt 354  Q
    ||||| ||||||||||||  ||||| |||| |  |||||||||| | ||||||| |||| |||||||||| |||| |||||||||| ||||||| |||||    
T  49370 tacacacatggcatgccaaatcagcgttgatttggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtt 49469  T
Q  355 tttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||| | | |||| |||||||||||||| |||||||||||| ||||  ||||||||||||||| ||||    
T  49470 tttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagccta 49536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 257 - 420
Target Start/End: Complemental strand, 27437992 - 27437826
Alignment:
Q  257 tacacgcatggcatgccac-tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtt 354  Q
    ||||| ||||||||||||  ||||| |||| |  |||||||||| | ||||||| |||| |||||||||| |||| |||||||||| ||||||| |||||    
T  27437992 tacacacatggcatgccaaatcagcgttgatttggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtt 27437893  T
Q  355 tttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcactttaaccta 420  Q
    ||| | | |||| |||||||||||||| |||||||||||| ||||  ||||||||||||||| ||||    
T  27437892 tttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagccta 27437826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 259 - 413
Target Start/End: Complemental strand, 6840353 - 6840199
Alignment:
Q  259 cacgcatggcatgccactcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagttttt 357  Q
    ||||||| |||||||||||||  |||||||||| |||||||   ||||||||||||  |||||||| | ||| |||||| ||| ||||||||||||||||    
T  6840353 cacgcattgcatgccactcagtgttgactgagttaaaattggtcaaaaggatcaaagatgcaaagggattaaatcttagagggtcaaaattatagttttt 6840254  T
Q  358 gtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactt 413  Q
    ||||||| | ||||||||| |||| ||||| ||| ||| || || |||||||||||    
T  6840253 gtatttaaggggccaaaatcgcaactttttgaaacttaagg-gggaaagtgcactt 6840199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 290 - 416
Target Start/End: Original strand, 26575025 - 26575151
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||| |||||||||||||| ||||||||||  ||| |||||||||| ||||||| ||||||||||| ||| | ||  ||||||||||||||||     
T  26575025 gtcaaaattggcaaaaaggatcaaagttgcaaaggagttaaatcttagggggccaaaattgtagtttttgtacttaaggggttaaaattgcaagtttttg 26575124  T
Q  389 aaagttagggtggaaaagtgcactttaa 416  Q
    |||||||| | || ||||||||||||||    
T  26575125 aaagttagagagg-aaagtgcactttaa 26575151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 291 - 422
Target Start/End: Original strand, 16704469 - 16704602
Alignment:
Q  291 tcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    |||||||||||||||||||||| | ||||||||   |||| |||||  ||  ||||||| ||||||||||| ||||| || ||||||||||||||||| |    
T  16704469 tcaaaattgacaaaaaggatcatagttgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttga 16704568  T
Q  390 aagtt-agggtggaaaagtgcactttaacctaaa 422  Q
    ||||| |||| |||||||||||||||| ||||||    
T  16704569 aagttaagggaggaaaagtgcactttagcctaaa 16704602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 423
Target Start/End: Original strand, 1829574 - 1829709
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||| || ||||  ||||||||  |||| ||||||||||| |||||| |||||||| || ||||| || |||||||||||||||||     
T  1829574 gtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggggtcaaaattgcaagttttta 1829673  T
Q  389 aaagttagggtg-gaaaagtgcactttaacctaaaa 423  Q
    |||||||||| |  ||||||||||||||||| ||||    
T  1829674 aaagttagggggaaaaaagtgcactttaaccaaaaa 1829709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 8821990 - 8821869
Alignment:
Q  303 aaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtg 400  Q
    ||||||| |||| |||||| ||| |||| |||||||||| | ||||| | ||||| ||| ||||| |||||||||||||||||||| |||||||| || |    
T  8821990 aaaaggaccaaagttgcaatggagctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggg 8821891  T
Q  401 gaaaagtgcactttaacctaaa 422  Q
    ||||||||||||||| ||||||    
T  8821890 gaaaagtgcactttagcctaaa 8821869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 420
Target Start/End: Original strand, 27322029 - 27322170
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattg 378  Q
    |||||||||||||||||| ||  |||||||  |||   |||||||  |||||||||||||||  |||||| | ||||| ||| ||||| |||||||||||    
T  27322029 cattgactgagtcaaaatagagcaaaaggacgaaataagcaaaggggctaattcttagggggggaaaattgtggttttggtacttagggggccaaaattg 27322128  T
Q  379 caagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    |||| |||| |||| ||||| |||||||||||||||| ||||    
T  27322129 caagattttgaaagataggggggaaaagtgcactttagccta 27322170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 421
Target Start/End: Complemental strand, 8659409 - 8659262
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | ||||| ||| ||||| |||||||    
T  8659409 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaa 8659310  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaa 421  Q
    ||||||||||||| |||||||| || |||||||||||||||| |||||    
T  8659309 attgcaagtttttgaaagttagagggggaaaagtgcactttagcctaa 8659262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 10785874 - 10786000
Alignment:
Q  279 gcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaatt 377  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||  |||| ||||| ||||  |||||| ||||||||||| ||||| ||  ||||||    
T  10785874 gcattgact-agtcaaaattggtaaaaaggatcaaagttgcaaaggggctaaatcttaaggggttaaaattgtagtttttgtacttagggggttaaaatt 10785972  T
Q  378 gcaagttttttaaagttagggtggaaaa 405  Q
    |||| ||||| |||||||||| ||||||    
T  10785973 gcaaatttttaaaagttaggggggaaaa 10786000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 424
Target Start/End: Complemental strand, 26574748 - 26574613
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttta 389  Q
    ||||||||||||||||| ||||||| |||||||||  |||| ||||| |||   ||| | ||||||||||| ||||  |  ||||||||||||||||| |    
T  26574748 gtcaaaattgacaaaaaagatcaaagttgcaaaggggctaaatcttaagggatcaaaatgtagtttttgtacttagaggttcaaaattgcaagtttttga 26574649  T
Q  390 aagttag-ggtggaaaagtgcactttaacctaaaat 424  Q
    ||||||| ||||| ||| ||||||||| ||||||||    
T  26574648 aagttagaggtgggaaattgcactttagcctaaaat 26574613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 7316264 - 7316397
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| ||||||| || |  ||||||||  |||| ||||| ||||| |||||| | ||||   |||||||| ||||||||||||||||||||    
T  7316264 agtcaaaattgaccaaaaggaccatagatgcaaaggggctaaatcttaaggggccaaaattgtggtttcaatatttagggggccaaaattgcaagttttt 7316363  T
Q  388 taaagtt-agggtggaaaagtgcactttaaccta 420  Q
     |||||| |||| |||||||||||||||| ||||    
T  7316364 gaaagttaaggggggaaaagtgcactttagccta 7316397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 415
Target Start/End: Original strand, 8660161 - 8660301
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctta-gggggcaaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   |||||||||||| |||||| ||| |||| ||||| |||||| ||||| | ||||| ||| ||||| || ||||    
T  8660161 tcagcgttgacttggtcaaaattggtcaaaaggatcaaagttgcaatggagctaaatcttaggggggctaaattgtggttttggtacttagg-ggtcaaa 8660259  T
Q  375 attgcaagttttttaaagttagg-gtggaaaagtgcacttta 415  Q
    ||||||||||||| ||||||||| | ||||||||||||||||    
T  8660260 attgcaagtttttgaaagttaggaggggaaaagtgcacttta 8660301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 415
Target Start/End: Complemental strand, 7315010 - 7314883
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| |||| || ||||  ||||||||  |||| |||||||||| ||||||| | |||||  || ||||| ||||||||||||||||||||    
T  7315010 agtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggtcaaaattgttgttttgatacttagg-ggccaaaattgcaagttttt 7314912  T
Q  388 taaagttag-ggtggaaaagtgcacttta 415  Q
     |||||||| || ||||||||||||||||    
T  7314911 gaaagttagagggggaaaagtgcacttta 7314883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 420
Target Start/End: Complemental strand, 10784724 - 10784590
Alignment:
Q  290 gtcaaaattgacaaaaa-ggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||| ||||| |||||||| |||||||||  |||| |||| |||||| |||||| |||||||| || ||||| ||  ||||||||||||||||    
T  10784724 gtcaaaattgataaaaaaggatcaaagttgcaaaggggctaaatctttgggggccaaaattgtagtttttatacttagggggttaaaattgcaagttttt 10784625  T
Q  388 taaagtta--gggtggaaaagtgcactttaaccta 420  Q
     |||||||  ||  |||||||||||||||| ||||    
T  10784624 aaaagttaagggagggaaaagtgcactttagccta 10784590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 420
Target Start/End: Original strand, 34834536 - 34834682
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| |||||||||| | ||||| | |||||  || |||||||  ||||    
T  34834536 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttgatacttaggagatcaaa 34834635  T
Q  375 attgcaagttttttaaagttaggg-tggaaaagtgcactttaaccta 420  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||    
T  34834636 attgcaagtttttgaaagttagggagggaaaagtgcactttaaccta 34834682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 415
Target Start/End: Complemental strand, 3721756 - 3721615
Alignment:
Q  276 tcagcattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaa 374  Q
    ||||| ||||||  ||||||||||   ||||||| |||| |||||| ||  |||| ||||| |||| | ||||||| ||||| ||| ||||| || ||||    
T  3721756 tcagcgttgactaggtcaaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaaggggtctaaattatggttttggtacttagggggtcaaa 3721657  T
Q  375 attgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  3721656 attgcaagtttttgaaagttagagggggaaaagtgcacttta 3721615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 14823546 - 14823679
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| ||||| || ||  |||||| ||  |||| ||||||||||| |||||| |||||| |||| ||| | ||| |||||||||||||||||    
T  14823546 gtcaaaattgaccaaaagaattaaggttgcaacggttctaaatcttagggggccaaaattgtagtttctgtacttaaggggctaaaattgcaagtttttt 14823645  T
Q  389 aaagttagggtgg--aaaagtgcactttaaccta 420  Q
    ||| ||| || ||  |||||||||||||| ||||    
T  14823646 aaaattaagggggaaaaaagtgcactttagccta 14823679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 420
Target Start/End: Complemental strand, 27318456 - 27318313
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggca---aaattatagtttttgtatttaggaggccaaaat 376  Q
    |||||||||||||||||| || ||||||||  |||   |||||||  |||||||||||||||     ||||| | ||||| ||| ||||| |||||||||    
T  27318456 cattgactgagtcaaaatagagaaaaaggacgaaataagcaaaggggctaattcttaggggggggggaaattgtggttttggtacttagggggccaaaat 27318357  T
Q  377 tgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    |||||| |||| |||| ||||| | ||| |||||||||| ||||    
T  27318356 tgcaagattttgaaagatagggggaaaaggtgcactttagccta 27318313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 29473204 - 29473076
Alignment:
Q  293 aaaattgacaaaaaggatcaaaattgcaaaggaactaattcttag-ggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaa 391  Q
    ||||||||||||||||||||||||||||||||  | ||||||| | ||| ||||||| |  |||||||   ||||   |||||||||||| ||||| |||    
T  29473204 aaaattgacaaaaaggatcaaaattgcaaaggggccaattcttggagggccaaaattgttatttttgttcatagggaaccaaaattgcaactttttaaaa 29473105  T
Q  392 gtt-agggtggaaaagtgcactttaacct 419  Q
     || |||| |||||||||||||| |||||    
T  29473104 cttaaggggggaaaagtgcacttgaacct 29473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 14822490 - 14822355
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||| ||  |||||||| ||| |||||| |  ||||| ||||||||||| |||||| |||||| | || ||| | ||||||||||||||||||||     
T  14822490 gtcaaaatagattaaaaggattaaagttgcaatgagactaaatcttagggggccaaaattgtagtttctatacttatggggccaaaattgcaagtttttg 14822391  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaaaa 423  Q
    ||| || ||||  |||||||||||| || |||||||    
T  14822390 aaaattaaggggtgaaaagtgcactctagcctaaaa 14822355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 423
Target Start/End: Original strand, 3722527 - 3722613
Alignment:
Q  338 ggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttaggg-tggaaaagtgcactttaacctaaaa 423  Q
    ||||| ||||| | ||||| ||| ||||  || ||||||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  3722527 ggggctaaattgtggttttggtacttagagggtcaaaattgcaagtttttgaaagttagggagggaaaagtgcactttagcctaaaa 3722613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 16703653 - 16703573
Alignment:
Q  334 ttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||||| |||||| ||||||||||||||| | |  ||||||||||||||||| |||| ||||| ||||||||||||||||    
T  16703653 ttagggggctaaaattgtagtttttgtatttatg-gatcaaaattgcaagtttttgaaagataggg-ggaaaagtgcacttta 16703573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 6842308 - 6842389
Alignment:
Q  343 aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcactttaacctaaaa 423  Q
    |||||| ||||||||| |  |||| |||||||||||||| ||||| ||| |||| || |||||||||||||||| |||||||    
T  6842308 aaaattgtagtttttgcacatagggggccaaaattgcaactttttgaaacttagagggggaaaagtgcactttagcctaaaa 6842389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 12382735 - 12382809
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag-ggtggaaaagtgcacttta 415  Q
    |||||||||||||||  || ||||| || ||||||| ||| ||||| ||| |||| |||||||||||||||||||    
T  12382735 caaaattatagttttaatacttagggggtcaaaattacaaatttttaaaaattagaggtggaaaagtgcacttta 12382809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 22418867 - 22418924
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaatt 348  Q
    |||||||||||| |||||| ||| |||||||||||  |||| |||||||||||||||||    
T  22418867 gtcaaaattgaccaaaagg-tcacaattgcaaaggggctaaatcttagggggcaaaatt 22418924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 421
Target Start/End: Complemental strand, 17600 - 17467
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  ||||| |||| ||||||||||||   |||||||| |||||| |||||| ||||||||||| ||||| ||||||||||||||||||||     
T  17600 gtcaaaattggtaaaaaagatcgaaattgcaaaggggataattcttggggggccaaaattgtagtttttgtacttagggggccaaaattgcaagttttta 17501  T
Q  389 aaagtt-agggtggaaaagtgcactttaacctaa 421  Q
    |||||| |||| | |||||||||||||| |||||    
T  17500 aaagttaagggggaaaaagtgcactttagcctaa 17467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 18747 - 18874
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||| ||| ||| |||||| ||  |||| | ||| ||||| ||||||||||||||||||  |||| | |||||||||||| |||||     
T  18747 gtcaaaattgaccaaaatgattaaagttgcaatggggctaaattttaaggggccaaaattatagtttttgtacctaggggaccaaaattgcaaattttta 18846  T
Q  389 aaagttagg-gtggaaaagtgcacttta 415  Q
    ||||||||| | | ||||||||||||||    
T  18847 aaagttaggagggaaaaagtgcacttta 18874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 363 - 236
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  |||||||||||||  ||||||||  |||||||||||||| | ||||||||||||||||||  |||| | |||||||||||| |||||     
T  363 gtcaaaattgggaaaaaggatcaaatatgcaaaggggctaattcttaggggaccaaaattatagtttttgtacataggggaccaaaattgcaactttttg 264  T
Q  389 aaagtt-agggtggaaaagtgcacttta 415  Q
    |||||| |||| || |||||||||||||    
T  263 aaagttaagggggggaaagtgcacttta 236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 949 - 1055
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||||  |||||||| ||||  ||||||||  ||||||||| |||||| ||||||||||||||||||  || | | |||||||||||| |||||     
T  949 gtcaaaattgggaaaaaggaccaaatatgcaaaggggctaattcttggggggccaaaattatagtttttgtacataagggaccaaaattgcaacttttta 1048  T
Q  389 aaagtta 395  Q
    |||||||    
T  1049 aaagtta 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 415
Target Start/End: Original strand, 2428 - 2562
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||||| |||||||||||| |||||||| ||| |||||| | | |||| || ||||||| ||||||  | ||||||||| ||||| || ||||||||||    
T  2428 ttgactgggtcaaaattgaccaaaaggatgaaatttgcaatgtagctaaatcgtagggggccaaaatggttgtttttgtacttagggggtcaaaattgca 2527  T
Q  381 agtttttt-aaagttagggtggaaaagtgcacttta 415  Q
    |||||||| |||||||||| ||||||||||||||||    
T  2528 agttttttgaaagttaggg-ggaaaagtgcacttta 2562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 415
Target Start/End: Original strand, 7051 - 7185
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgca 380  Q
    ||||||| |||||||||||| |||||||| ||| |||||| | | |||| || ||||||| ||||||  | ||||||||| ||||| || ||||||||||    
T  7051 ttgactgggtcaaaattgaccaaaaggatgaaatttgcaatgtagctaaatcgtagggggccaaaatggttgtttttgtacttagggggtcaaaattgca 7150  T
Q  381 agtttttt-aaagttagggtggaaaagtgcacttta 415  Q
    |||||||| |||||||||| ||||||||||||||||    
T  7151 agttttttgaaagttaggg-ggaaaagtgcacttta 7185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 421
Target Start/End: Original strand, 5409 - 5542
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattctta-gggggcaaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    ||||||||| || |||||||||||| ||| || ||  |||| ||||| |||||||||||| ||||||||||| ||| | || |||||||||||||||||     
T  5409 gtcaaaattaaccaaaaggatcaaatttgtaatggggctaaatcttaagggggcaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 5508  T
Q  389 aaagtta-gggtggaaaagtgcactttaacctaa 421  Q
    ||| ||| ||| |||||||||||||||| |||||    
T  5509 aaaattagggggggaaaagtgcactttagcctaa 5542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 4754 - 4827
Alignment:
Q  342 caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcacttta 415  Q
    ||||||| |||||| |||||||||| ||||||||||||| |||||| |||||||||| || |||||||||||||    
T  4754 caaaattgtagtttctgtatttagggggccaaaattgcatgtttttaaaagttagggagggaaagtgcacttta 4827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 3806 - 3696
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| |||| ||| ||| |||||| |   |||| ||||||||| | ||||||||||||| | || | ||| ||||||||||||||||||||    
T  3806 agtcaaaattgaccaaaaagattaaagttgcaatgcggctaaatcttaggggactaaaattatagtttctttactcagggggccaaaattgcaagttttt 3707  T
Q  388 taaagttaggg 398  Q
     ||||||||||    
T  3706 gaaagttaggg 3696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 422
Target Start/End: Complemental strand, 19619 - 19484
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||| |||| |||||||  ||||||||   ||| |||||||||  ||||||| |||||||| || ||||| ||||||||||||||| ||||    
T  19619 agtcaaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggatcaaaattgtagtttttatacttagggggccaaaattgcaaggtttt 19520  T
Q  388 taaagtt-agggtggaaaagtgcactttaacctaaa 422  Q
     ||| || |||| |||||| ||||||||| ||||||    
T  19519 gaaaattaaggggggaaaaatgcactttagcctaaa 19484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 415
Target Start/End: Original strand, 49109 - 49182
Alignment:
Q  343 aaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtt-agggtggaaaagtgcacttta 415  Q
    |||||| |||||||  || |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  49109 aaaattgtagttttaatacttaggaggccaaaattgcaagtttttaaaagttaagggtggaaaagtgcaattta 49182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 23210 - 23073
Alignment:
Q  289 agtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggg-gcaaaattatagtttttgtatttaggaggccaaaattgcaagttttt 387  Q
    ||||||||||||  |||| ||| ||| |||||| ||  ||||  |||||||| |||| ||| | ||||| ||| ||||  || |||||||||||||||||    
T  23210 agtcaaaattgagcaaaatgataaaatttgcaatggggctaaagcttaggggagcaagattgttgttttggtacttagagggacaaaattgcaagttttt 23111  T
Q  388 taaagttagggtggaaaagtgcactttaacctaaaattt 426  Q
     |||||||||| |||||||||||||||| || |||||||    
T  23110 gaaagttaggg-ggaaaagtgcactttagccaaaaattt 23073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 23931 - 24000
Alignment:
Q  359 tatttaggaggccaaaattgcaagttttttaaagttagggtg-gaaaagtgcactttaacctaaaatttt 427  Q
    ||||||||  ||||||||||||||||||| |||||||||| |  |||||||||||||| |||||| ||||    
T  23931 tatttagggagccaaaattgcaagtttttgaaagttagggagaaaaaagtgcactttagcctaaattttt 24000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 37277 - 37151
Alignment:
Q  290 gtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggc-aaaattatagtttttgtatttaggaggccaaaattgcaagtttttt 388  Q
    |||||||||||| |||| ||| ||| || ||| ||  |||| || |||||||| |||||| | ||||||||| ||||| || ||||||||||| ||||||    
T  37277 gtcaaaattgaccaaaatgatgaaattttcaatggggctaaatcgtagggggccaaaattgttgtttttgtacttagggggtcaaaattgcaaatttttt 37178  T
Q  389 -aaagttagggtggaaaagtgcacttta 415  Q
     |||| ||||| ||||||||||||||||    
T  37177 aaaagataggg-ggaaaagtgcacttta 37151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 422
Target Start/End: Complemental strand, 6436 - 6339
Alignment:
Q  327 ctaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagtta-gggtggaaaagtgcactttaacctaaa 422  Q
    |||| |||||||||| ||||||| |||||||||||  |||| ||| ||||| | || ||||| ||| ||| ||| |||||||||||||||||||||||    
T  6436 ctaaatcttagggggtcaaaattgtagtttttgtacatagggggctaaaatcgtaactttttgaaacttaagggcggaaaagtgcactttaacctaaa 6339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 9035 - 9128
Alignment:
Q  327 ctaattcttagggggcaaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttagggtggaaaagtgcactttaaccta 420  Q
    |||| ||||||||| ||||||| |||||||||||  |||||||| |||||  ||| ||||| ||| | |||  | |||||||||||||| ||||    
T  9035 ctaaatcttaggggccaaaattgtagtttttgtacataggaggcaaaaatcacaactttttgaaattaaggaggaaaaagtgcactttagccta 9128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 7394 - 7513
Alignment:
Q  298 tgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg-caaaattatagtttttgtatttaggaggccaaaattgcaagttttttaaagttag 396  Q
    |||| |||||||||||| |||||||||  |||| |||||||||| ||||||| |||||| ||||  |||| || |||||| | || ||||| ||| ||||    
T  7394 tgactaaaaggatcaaagttgcaaaggggctaaatcttagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttag 7493  T
Q  397 -ggtggaaaagtgcacttta 415  Q
     || ||| ||||||||||||    
T  7494 agggggacaagtgcacttta 7513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 7880 - 7941
Alignment:
Q  280 cattgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttaggggg 341  Q
    |||||||| ||||||||||| | |||||||||||| |||||||||  |||| || |||||||    
T  7880 cattgactaagtcaaaattggccaaaaggatcaaagttgcaaaggggctaaatcataggggg 7941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 415
Target Start/End: Complemental strand, 13329 - 13196
Alignment:
Q  282 ttgactgagtcaaaattgacaaaaaggatcaaaattgcaaaggaactaattcttagggggcaaaa-ttatagtttttgtatttaggaggccaaaattgca 380  Q
    |||||| |||| ||||||  ||| |||| ||||  |||||| ||  ||| ||||||||| ||||| || ||||||| |||  ||||||| ||||||  ||    
T  13329 ttgactaagtcgaaattgggaaagaggaccaaatatgcaaaagagttaaatcttaggggacaaaaattgtagttttcgtacataggaggtcaaaatcaca 13230  T
Q  381 agttttttaaagttagggtggaaaagtgcacttta 415  Q
    | ||||| |||||||||| ||||||||||||||||    
T  13229 actttttcaaagttaggg-ggaaaagtgcacttta 13196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University