View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_14 (Length: 468)
Name: NF11599_low_14
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 28169026 - 28169473
Alignment:
| Q |
1 |
ccctattacctgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacactcgatctaaccaaattgatgattcaattccataccaagtg |
100 |
Q |
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| T |
28169026 |
ccctattacatgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacacttgatctaaccaaattgatgattcaaatccataccaagtg |
28169125 |
T |
|
| Q |
101 |
aattgtctgtccagcaaacaaatttatgtaagtttcatcatagttatccattcaatgaaattcttcatcgcagatgtaatcccttctttattattctttc |
200 |
Q |
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| T |
28169126 |
aattgtct-tccagcaaacaaatttatgtaagtttcaccatagttatccattcaatgaaattcttcatcgcagatgtaatcccttctttattattctttc |
28169224 |
T |
|
| Q |
201 |
tttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgtatcaataattcct |
300 |
Q |
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| T |
28169225 |
tttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgtataaagaattcct |
28169324 |
T |
|
| Q |
301 |
ttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcaaaaatcaactctccatcaaccaagatatatctc |
400 |
Q |
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| T |
28169325 |
ttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcgaaagtcaactctccatcaaccaagataaatctc |
28169424 |
T |
|
| Q |
401 |
ctatcatccgtaaagcactttaatttcttgaaataacgagtgtcccaag |
449 |
Q |
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| T |
28169425 |
ctatcatccgtaaagcactttgatttcatgaaataacgagtgtcccaag |
28169473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 176 - 445
Target Start/End: Original strand, 8558671 - 8558927
Alignment:
| Q |
176 |
gtaatcccttctttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgct |
275 |
Q |
| |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||| |
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| T |
8558671 |
gtaatcccttcattattattctttctttgttcgggttttaaaatttcattaaaatcatcgaacattatcaaaggagatgaaattgtcttcttaagctgcg |
8558770 |
T |
|
| Q |
276 |
taatatttgtgtatcaataattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcaaaaatcaa |
375 |
Q |
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|||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || ||| |
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| T |
8558771 |
taatatttgtgt-------------ttcctcgacagtcattgatccataaatcaacaaaaaagatataggaataggcgttgtacttttttcaagaaacaa |
8558857 |
T |
|
| Q |
376 |
ctctccatcaaccaagatatatctcctatcatccgtaaagcactttaatttcttgaaataacgagtgtcc |
445 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
8558858 |
ctctccatcaaccaagatatatctcctatcatccataaagcactttgatttcttgaaataacgagtgtcc |
8558927 |
T |
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