View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_15 (Length: 464)
Name: NF11599_low_15
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 123 - 454
Target Start/End: Complemental strand, 10563461 - 10563141
Alignment:
| Q |
123 |
agttacctatattgtcttgtctctactcatatgtgattagcttctatgttatgtactatgtagcactgacacttcagatttaagacatgtctggttttag |
222 |
Q |
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| T |
10563461 |
agttacctatatcgtcttgtctctactcatatgtgattagcttctatgt------------agcaccgacactttggatttaagacatgtctggttttag |
10563374 |
T |
|
| Q |
223 |
acattaaaaca-cacctacacatgtagttacactcaattacttgtgatctcgtgtagttacattcaattacttggggtctagacatatcattgtcagcat |
321 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10563373 |
acattaaaacaacacctacacatgtagttacactcaattacttgtgatctcgtgtagttacattcaattacttggggtctagacatatcattgtcagcat |
10563274 |
T |
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| Q |
322 |
tttgtctggtgtccggccatgtgtttgtgttcgtgtttcatagtgattcattggctagttaaaaagaagtgtctaggaatttcctccttttgtcttacct |
421 |
Q |
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| T |
10563273 |
tttgtctggtgtccgtccatgtgtttgtgttcgtgtttcatagtgattcatgggctagttaaaaagaaatgtctaggaatttcctccttttgtcttacct |
10563174 |
T |
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| Q |
422 |
tacttgttgacttttcttttacctcattctgtg |
454 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
10563173 |
tacttgttgacttttcttttacctcattctgtg |
10563141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 10563543 - 10563485
Alignment:
| Q |
39 |
gtaatatgtttctctgtgtgttaattgtttgttttgcactattaaacactacctgcttg |
97 |
Q |
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| T |
10563543 |
gtaatatgtttctctgtgtgttaattgtttgttttgcactattaaacactacctgcttg |
10563485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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