View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_low_16 (Length: 449)
Name: NF11599_low_16
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_16 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0076 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 47615 - 48005
Alignment:
| Q |
8 |
agaagcaaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||| |
|
|
| T |
47615 |
agaagctaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatc |
47714 |
T |
|
| Q |
108 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatacttttt-tccgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
47715 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatactttttgttcgt |
47814 |
T |
|
| Q |
207 |
cgtttatgcaatatatgcactgtgatagagtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaag |
306 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47815 |
cgtttatgcgatatatgcactgtgatagagtgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaag |
47914 |
T |
|
| Q |
307 |
gatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaat |
397 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47915 |
agtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatcaatgaaat |
48005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 20134251 - 20133824
Alignment:
| Q |
8 |
agaagcaaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
20134251 |
agaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
20134152 |
T |
|
| Q |
108 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatacttttt-tccgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
20134151 |
gtgtcaggtggtacctttctaactctgttattctccgtggatccttttgttaaaccgaattggactttggttttctgctattacaatactttttgttcgt |
20134052 |
T |
|
| Q |
207 |
cgtttatgcaatatatgcactgtgatagagtgataattaatattctggagacaataggttggactttaatccttgattctat---tactactactacagc |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
20134051 |
cgtttatgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcatccttgattctattactactactactacagc |
20133959 |
T |
|
| Q |
304 |
aaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaatgtatgg |
403 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20133958 |
cagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaatgtatgg |
20133859 |
T |
|
| Q |
404 |
cttttgatttcactttatggatttagttgcctttg |
438 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| |
|
|
| T |
20133858 |
ctttcgatttcactttatgaatttagttgcctttg |
20133824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 237 - 397
Target Start/End: Original strand, 14674569 - 14674726
Alignment:
| Q |
237 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
336 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
14674569 |
tgataattgatattttggagacaataggttggacattcatccctgatt---tcattaatactacagcaaggttgttgtacttcctaagtaattttcaggg |
14674665 |
T |
|
| Q |
337 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14674666 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttataagtgaaat |
14674726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 237 - 389
Target Start/End: Original strand, 31710199 - 31710348
Alignment:
| Q |
237 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
336 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
31710199 |
tgataattgatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctaagtaattttcaggg |
31710295 |
T |
|
| Q |
337 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
389 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| | |||||||| |
|
|
| T |
31710296 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagctcggttatc |
31710348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 18974406 - 18974484
Alignment:
| Q |
237 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
315 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18974406 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
18974484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 17535348 - 17535290
Alignment:
| Q |
337 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaa |
395 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| || |||| || ||||||||||||| |
|
|
| T |
17535348 |
cctcaagattcaactaacaagctcaatttctcatctccatcgtcctggttatcagtgaa |
17535290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 44357820 - 44358247
Alignment:
| Q |
8 |
agaagcaaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatc |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
44357820 |
agaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatc |
44357919 |
T |
|
| Q |
108 |
gtgtcaggtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatacttttt-tccgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
44357920 |
gtgtcaggtggtacctttctaactctgttattctccgtggatccttttgttaaaccgaattggactttggttttctgctattacaatactttttgttcgt |
44358019 |
T |
|
| Q |
207 |
cgtttatgcaatatatgcactgtgatagagtgataattaatattctggagacaataggttggactttaatccttgattctat---tactactactacagc |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
44358020 |
cgtttatgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcatccttgattctattactactactactacagc |
44358112 |
T |
|
| Q |
304 |
aaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaatgtatgg |
403 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44358113 |
cagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaatgtatgg |
44358212 |
T |
|
| Q |
404 |
cttttgatttcactttatggatttagttgcctttg |
438 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| |
|
|
| T |
44358213 |
ctttcgatttcactttatgaatttagttgcctttg |
44358247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 5331457 - 5331388
Alignment:
| Q |
246 |
atattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
315 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
5331457 |
atattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
5331388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 217 - 391
Target Start/End: Original strand, 12325719 - 12325893
Alignment:
| Q |
217 |
atatatgcactgtgatagagtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtat |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12325719 |
atatatgcactgtgatagggtgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
12325818 |
T |
|
| Q |
317 |
ttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcag |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325819 |
ttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatcag |
12325893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 12325444 - 12325623
Alignment:
| Q |
15 |
aaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatcgtgtcag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
12325444 |
aaggcaatattccgaacttcgccaacacc---gccgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
12325540 |
T |
|
| Q |
115 |
gtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatacttttt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||| ||||||||||||||| |
|
|
| T |
12325541 |
gtggtacctttctaactctgttattctccgttgatccttttgttaaaccgagtcggccattagttttc----attacaatacttttt |
12325623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 236 - 407
Target Start/End: Original strand, 11203439 - 11203610
Alignment:
| Q |
236 |
gtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcagg |
335 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
11203439 |
gtgataattactattctggagacaatagattggactttcatccttgatttcattact---actacagcaaaggtattgtacttcctaagtaattttcagg |
11203535 |
T |
|
| Q |
336 |
gcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt---atcagtgaaatgtatggcttt |
407 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11203536 |
gcctcaagattcaacaaatgaactcaacttctcccctacatcaacccggttatcatcagtgaaatgtatggcttt |
11203610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 389
Target Start/End: Complemental strand, 4281689 - 4281540
Alignment:
| Q |
237 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
336 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||| ||||||||||||| |
|
|
| T |
4281689 |
tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg |
4281593 |
T |
|
| Q |
337 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
389 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
4281592 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc |
4281540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 19807279 - 19807201
Alignment:
| Q |
237 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
315 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19807279 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
19807201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 17594762 - 17594851
Alignment:
| Q |
300 |
cagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
389 |
Q |
| |
|
|||||||| | || || ||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||| || ||||||| |
|
|
| T |
17594762 |
cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
17594851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 237 - 389
Target Start/End: Original strand, 8165833 - 8165979
Alignment:
| Q |
237 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
336 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || || ||||||| |||| ||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
8165833 |
tgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccac------aagggcgttgtatttcctaagtaattttcaggg |
8165926 |
T |
|
| Q |
337 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
389 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | || ||||||||||||| |
|
|
| T |
8165927 |
cctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatc |
8165979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 383 - 329
Alignment:
| Q |
337 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcag |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| || ||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctcatctccatcgtcctggttatcag |
329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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