View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_low_2 (Length: 767)
Name: NF11599_low_2
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_2 |
 | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
| [»] scaffold0495 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 313 - 756
Target Start/End: Original strand, 32774296 - 32774732
Alignment:
| Q |
313 |
ccaaatcaaccaaaaccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatc |
412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32774296 |
ccaaatcaaccaaagccccttctttagtctcttggaaattacttctctattccaacaatcgaattgcataaacaagttatgtggagtaacaaaattaatc |
32774395 |
T |
|
| Q |
413 |
tcaagccaattcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
32774396 |
tcaagccaattcaatatgccacgccaaattaacgaggatacatcacaatgtaagaaaagatgagtagatgtctccacttgcctcccacataacacacaaa |
32774495 |
T |
|
| Q |
513 |
gaagggacgaattcggggctaagatgtgacgatttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttgga |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32774496 |
gaagggacgaattcggggctaagatgtgacgatttacgagattgaccttcgccggaatac-------gagtaacgcccacgaaaacgccactactttgga |
32774588 |
T |
|
| Q |
613 |
cggagccggactcatccaaagtagagaaaaccccctcatttaaatctcccgcaccttcctccaaaagcaagatattttccaaaatggaataagatgattt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32774589 |
cggagccggactcatccaaagtagagaaaaccccctcatttaaatctcccacaccttcctccaaaagcaagatattttccaaaatggaataagatgattt |
32774688 |
T |
|
| Q |
713 |
caccgagaataaacctccattatccggaagccacacccacctat |
756 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
32774689 |
cactgagaataaacatccatcatccggaagccacacccacctat |
32774732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 32774023 - 32774309
Alignment:
| Q |
19 |
cctactgtaacatagcgaagggccactgcagcaaataaggccagttaaaggaaggcgctacaacaaagcaaaacaccacaaaaacaatgctatacacaag |
118 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32774023 |
cctactgtaacacagcgaagggccagggcagcaaataaggccagttaaaggaaggcgctacaacaaagcaaaacaccacaaaaacaatgctatacacaag |
32774122 |
T |
|
| Q |
119 |
cccattcatcttctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32774123 |
cccattcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaa |
32774222 |
T |
|
| Q |
216 |
ccgttttgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaa |
302 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32774223 |
ccgctttgatctcatccactaaatcctcaacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcaaccaaa |
32774309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 412 - 642
Target Start/End: Original strand, 4641056 - 4641286
Alignment:
| Q |
412 |
ctcaagccaattcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaa |
511 |
Q |
| |
|
||||||||||||||| || |||| |||||||| ||||||||||||||||||| ||| || || | ||| ||||||| |||||||| | |||||| |
|
|
| T |
4641056 |
ctcaagccaattcaagatttcacgtcaaattaaagaggaaacatcacaatgtaggaataggtgtgaagaagtctccggccacctcccacacataacacaa |
4641155 |
T |
|
| Q |
512 |
agaagggacgaattcggggctaagatgtgacgatttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttgg |
611 |
Q |
| |
|
|||||||||| || ||| ||||||| || ||| || |||||| | |||||| |||||||||||||||||| | | | || ||||||||||| || | |
|
|
| T |
4641156 |
agaagggacgcatccggatctaagatatggcgaagcgcaagattgtctctcgtcggaatacgatcaaggagtaaggacaatgagaacgccactacctttg |
4641255 |
T |
|
| Q |
612 |
acggagccggactcatccaaagtagagaaaa |
642 |
Q |
| |
|
| ||| |||||||| |||||| || |||||| |
|
|
| T |
4641256 |
atggacccggactcttccaaattaaagaaaa |
4641286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 19586680 - 19586741
Alignment:
| Q |
266 |
aagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| || |||||||||| ||||||||| |
|
|
| T |
19586680 |
aagatccttgcatttctttccttccaaatcaaccaaatcgttgcgtgccaaaccaaccaaaa |
19586741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 18922853 - 18922796
Alignment:
| Q |
267 |
agatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaacca |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
18922853 |
agatccttgcatttctttccttctaaatcatccaaattgatttgtgccaaatcaacca |
18922796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 123 - 642
Target Start/End: Complemental strand, 11272615 - 11272095
Alignment:
| Q |
123 |
ttcatcttctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgt |
219 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11272615 |
ttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaaccgc |
11272516 |
T |
|
| Q |
220 |
tttgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatc |
319 |
Q |
| |
|
|||||| |||| ||| | |||||||| ||||| |||| || ||||| ||||||||||||||||| ||| ||||| |||||||||| || ||||||||| |
|
|
| T |
11272515 |
tttgatttcattcacaatttcctccacttcctttctttgattattgaaaatccttgcatttctttctttc-aaatcaaccaaattgttgcatgccaaatc |
11272417 |
T |
|
| Q |
320 |
aaccaaaaccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagcc |
419 |
Q |
| |
|
||||||||||||||||| ||| |||| || | ||||| ||||||||| || ||||||||||| |||||||||| | | | ||||| ||||||||||| |
|
|
| T |
11272416 |
aaccaaaaccccttcttaagtatcttagatttaacttcattattccaacattcaaattgcacaaataagttatgtgtaatgataaaatgaatctcaagcc |
11272317 |
T |
|
| Q |
420 |
aattcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaagaaggga |
519 |
Q |
| |
|
||||||| || | |||||||||||| ||||||||||||||||||| || || |||| || |||||| | |||||||||| |||||||||||||| || |
|
|
| T |
11272316 |
aattcaagatacaacgccaaattaaagaggaaacatcacaatgtagaaagaggtgagcaggagtctccacctgcctcccacaaaacacacaaagaagaga |
11272217 |
T |
|
| Q |
520 |
cgaattcggggctaagatgtgacgatttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagcc |
619 |
Q |
| |
|
|| | |||| ||||||||| | | |||| ||||| | |||| || |||||||||||||||||| | |||||| |||||||| ||||||||| ||| | |
|
|
| T |
11272216 |
cgca-tcggttataagatgtgcctaattgcaagattatctttcgccggaatacgatcaaggagtaaggaccacgagaacgccaccactttggacagagtc |
11272118 |
T |
|
| Q |
620 |
ggactcatccaaagtagagaaaa |
642 |
Q |
| |
|
|| || ||||||| | |||||| |
|
|
| T |
11272117 |
gggatcttccaaagcaaagaaaa |
11272095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 186 - 468
Target Start/End: Original strand, 13016919 - 13017202
Alignment:
| Q |
186 |
ttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| || |||||| || ||| || || ||||| ||||||||||| |
|
|
| T |
13016919 |
ttaatctactcaacgtccaaacccaagaaaccacttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttc |
13017018 |
T |
|
| Q |
286 |
cttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaac |
385 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||| || ||||| | || || || ||||| |||||||||| || ||||| ||||| |
|
|
| T |
13017019 |
catccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaac |
13017118 |
T |
|
| Q |
386 |
aagttatgtggagtaacaaaattaatctc-aagccaattcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaa |
468 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13017119 |
aagttatgtggagttatgaaattaatctcaaagccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa |
13017202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 123 - 724
Target Start/End: Original strand, 1479447 - 1480052
Alignment:
| Q |
123 |
ttcatcttctatttaggcactc-aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttt |
221 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||| |||| ||||||| || |
|
|
| T |
1479447 |
ttcatcttttatttaggcactctaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaatcccacgaaaccgctt |
1479546 |
T |
|
| Q |
222 |
tgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaa |
321 |
Q |
| |
|
||||||| || |||| || |||||||||||| || |||| |||| |||||||||||||||||||||||| || ||||||| || || ||||||||| |
|
|
| T |
1479547 |
tgatctcgtcaactacctcttccacctccttctctttgttggtgaaaatccttgcatttctttccttccaagtcaaccaaatggtggcacaccaaatcaa |
1479646 |
T |
|
| Q |
322 |
c-caaaaccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagcca |
420 |
Q |
| |
|
| |||| || ||| || |||| || || | || ||| ||||| || ||||||||| ||| ||||| ||||||| |||||||||| ||||||| |
|
|
| T |
1479647 |
caaaaaaacctttcctttgtcttttagagaccgcctcattataccaacactcaaattgcacatccaaattatgaggagtaataaaattaatcccaagcca |
1479746 |
T |
|
| Q |
421 |
attcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaagaagggac |
520 |
Q |
| |
|
||| || || |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| || |||||||| | ||| |
|
|
| T |
1479747 |
atttaaaataaggtgccaaattaaagaggagacatcacaatgtaagaatagatgagtagatgtctcaacttccctcccacacaaaacacaaagtaaggat |
1479846 |
T |
|
| Q |
521 |
gaattcggggctaagatgtgacgatttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagccg |
620 |
Q |
| |
|
| | |||| | | ||| || ||| | || ||| | | |||| | ||| |||||||| | |||| ||| || || |||||||||||||| ||||||| |
|
|
| T |
1479847 |
gcacccgggtcaaggatatggcgaatggctagacttttcctcgtaggaatgcgatcaagtaataacaaccaagagaaggccactactttggaaggagccg |
1479946 |
T |
|
| Q |
621 |
gactcatccaaag--tagagaaaaccccctcatttaaatctcccgcaccttcctccaaaagcaagatattttccaaaatggaataagatgatttcaccga |
718 |
Q |
| |
|
|||| ||||||| ||| |||| |||||||| | ||||||| || |||| || | || |||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
1479947 |
aactcttccaaagcaaagaaaaaaaaccctcattaatatctcccacatcttcttcgacgaggaagatattttccaacatggaataagcagatttgaccga |
1480046 |
T |
|
| Q |
719 |
gaataa |
724 |
Q |
| |
|
||||| |
|
|
| T |
1480047 |
aaataa |
1480052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 13016047 - 13016118
Alignment:
| Q |
120 |
ccattcatcttctatttaggcactca---ggattccaagtccactcatgaaagaggaaagaggctatcttta |
188 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
13016047 |
ccattcatcttctattaaggcactctctcggattccaagtccactcataaaagagaaaagaggttatcttta |
13016118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 15316589 - 15316531
Alignment:
| Q |
269 |
atccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaa |
327 |
Q |
| |
|
||||| ||||| |||||| |||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
15316589 |
atcctcgcattcctttccctccaaatcatccaaattgccgcgtgccaaatcaactaaaa |
15316531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 3e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 145 - 486
Target Start/End: Complemental strand, 8273896 - 8273557
Alignment:
| Q |
145 |
aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccactaaatcctcc |
244 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
8273896 |
aggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatccactaactcctcc |
8273797 |
T |
|
| Q |
245 |
acctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccccttctttagtctct |
344 |
Q |
| |
|
|| || ||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || || | |
|
|
| T |
8273796 |
acttctttcatttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaattgtcgcatgccaaatcaaccaaaacccctttttaagccttt |
8273697 |
T |
|
| Q |
345 |
tggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaa |
444 |
Q |
| |
|
|||| | || || |||||||||| | | || ||||||| || | |||||||||| |||||| ||||||| ||||||||| || ||||| |||||||| |
|
|
| T |
8273696 |
tggagggaacctcactattccaacaacccaaatgcacaa--aaatcgtgtggagtaataaaattgatctcaaaccaattcaaaataccacgtcaaattaa |
8273599 |
T |
|
| Q |
445 |
cgaggaaacatcacaatgtaagaaaagatgagtagatgtctc |
486 |
Q |
| |
|
||||| |||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
8273598 |
cgaggtcacatcaaaatgcaagaaaagatgcgtagatgtctc |
8273557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 145 - 649
Target Start/End: Original strand, 37269868 - 37270373
Alignment:
| Q |
145 |
aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccactaaatcctcc |
244 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||| | |||||||||| ||||| |||||| | |||||| || ||||| | || ||| |
|
|
| T |
37269868 |
aggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataactttgatttcctccacaatctcatcc |
37269967 |
T |
|
| Q |
245 |
acctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccccttctttagtctct |
344 |
Q |
| |
|
|| ||||||| ||| || || || ||||| ||||||||| |||||||||||| ||||||||| || |||||||||| ||||| ||| || || ||||| | |
|
|
| T |
37269968 |
acatccttcgcttgattcttaaaaatcctcgcatttctt-ccttccaaatcgtccaaattgttgcatgccaaatcatccaaaccccttttttgagtcttt |
37270066 |
T |
|
| Q |
345 |
tggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaa |
444 |
Q |
| |
|
||||| | || || |||||||||| ||| ||||||||||||| |||||| ||||| ||||||||||| || ||||||||||| | ||||||||||| || |
|
|
| T |
37270067 |
tggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagttacaaaattaatgtctagccaattcaaaactccacgccaaatcaa |
37270166 |
T |
|
| Q |
445 |
cgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaagaagggacgaattcggggctaagatgtgacga |
544 |
Q |
| |
|
| | || ||||||||||| ||||| ||||| || ||||||||| | || ||| || |||||| || ||||| | |||| |||| ||||||||| |
|
|
| T |
37270167 |
ctaagacacatcacaatgcaagaatagatgtgttgatgtctccacacctctatcacacaaaacacaatttagagacgactccgggtctaaaatgtgacga |
37270266 |
T |
|
| Q |
545 |
tttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagccggactcatccaaagta--gagaaaa |
642 |
Q |
| |
|
|||| ||||| | |||||| || |||||||| ||||| | ||| || || ||||| |||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
37270267 |
attgcaagattagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaagtaatgagaaaa |
37270366 |
T |
|
| Q |
643 |
ccccctc |
649 |
Q |
| |
|
| ||||| |
|
|
| T |
37270367 |
ctccctc |
37270373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 145 - 487
Target Start/End: Complemental strand, 42941300 - 42940958
Alignment:
| Q |
145 |
aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccactaaatcctcc |
244 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||||| |||||||||| || || |||||| | |||||| || ||||| | || ||| |
|
|
| T |
42941300 |
aggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaactttgatttcctccacaatctcatcc |
42941201 |
T |
|
| Q |
245 |
acctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccccttctttagtctct |
344 |
Q |
| |
|
|| ||||||| ||| || || || ||||| |||||| ||||||||||||||| ||||||||| || || ||||||| ||||| ||| || || ||||| | |
|
|
| T |
42941200 |
acatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaatcgtccaaattgttgcatgtcaaatcatccaaaccccttttttgagtcttt |
42941101 |
T |
|
| Q |
345 |
tggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaa |
444 |
Q |
| |
|
||||| | || || |||||||||| ||| ||||||||||||| |||||| ||||| ||||||||||| || ||||||||||| | |||||||||| || |
|
|
| T |
42941100 |
tggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagttacaaaattaatgtctagccaattcaaaactccacgccaaagcaa |
42941001 |
T |
|
| Q |
445 |
cgaggaaacatcacaatgtaagaaaagatgagtagatgtctcc |
487 |
Q |
| |
|
||| || ||||||||||| ||||| ||||| || ||||||||| |
|
|
| T |
42941000 |
cgaagacacatcacaatgcaagaatagatgtgtcgatgtctcc |
42940958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 123 - 486
Target Start/End: Complemental strand, 9936481 - 9936115
Alignment:
| Q |
123 |
ttcatcttctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgt |
219 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||||| || |||||||||| ||| |||||| |||| |||||||| |||| |
|
|
| T |
9936481 |
ttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccacacccaagacaccgc |
9936382 |
T |
|
| Q |
220 |
tttgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatc |
319 |
Q |
| |
|
|| |||||||||||||| ||| | || |||||| || || ||||| |||| ||||||||||||| |||||||| ||||||| || || ||||||||| |
|
|
| T |
9936381 |
ttcaatctcatccactaactccccaacatccttctctttgtgattgaaaatccgtgcatttctttccatccaaatcaaccaaatagtggcatgccaaatc |
9936282 |
T |
|
| Q |
320 |
aaccaaaaccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagcc |
419 |
Q |
| |
|
||| |||| || ||| | || || | || || || ||||||||| || || ||| ||||||| ||||| || |||| |||||| ||| | |||| |
|
|
| T |
9936281 |
aacaaaaaacctttcctaagccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcatcccgagcc |
9936182 |
T |
|
| Q |
420 |
aattcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctc |
486 |
Q |
| |
|
|||| || || |||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
9936181 |
aatttaaaataccacgccaaattaaagaggagacatcacaatgcaagaagagatgggtagaagtctc |
9936115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 36404089 - 36404174
Alignment:
| Q |
145 |
aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcat |
230 |
Q |
| |
|
|||||||||||||||||| | |||||||| || |||||||| | ||||||||||| ||||| |||||| ||| |||||| |||| |
|
|
| T |
36404089 |
aggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccactttgatttcat |
36404174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 30503124 - 30503195
Alignment:
| Q |
256 |
ttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaa |
327 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||| |||||| || || || |||||||||||||| |
|
|
| T |
30503124 |
ttggttcttaaagatcctcgcattcctttccttccaaatcatccaaatagttgcatgtcaaatcaaccaaaa |
30503195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 7e-79; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 131 - 487
Target Start/End: Complemental strand, 1034376 - 1034017
Alignment:
| Q |
131 |
ctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatct |
227 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1034376 |
ctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaacccaagaaaccgctttaatct |
1034277 |
T |
|
| Q |
228 |
catccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaa |
327 |
Q |
| |
|
||||||||| || | |||||||||| || ||| || || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1034276 |
catccactatctcaccaacctccttcgctttgttattaaaaatccttgcatttctttccttccaaatcaaccaaattgtcgcgtgccaaatcaaccaaaa |
1034177 |
T |
|
| Q |
328 |
ccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaat |
427 |
Q |
| |
|
|| ||||| ||||||| ||| || || || |||||| || ||||| || ||||||||||||||||| ||| |||| | ||||| |||| || |
|
|
| T |
1034176 |
acctttcttatgtctcttagaaaccacctcattactccaacattcaaattgtacggccaagttatgtggagtaataaagttaaccccaagctaatttaaa |
1034077 |
T |
|
| Q |
428 |
atgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctcc |
487 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||||| || || ||||| |||||||||||| |
|
|
| T |
1034076 |
attccacgccaaattaaggaggagacatcacaatgcaaaaagagatgggtagatgtctcc |
1034017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 146 - 639
Target Start/End: Original strand, 2920962 - 2921454
Alignment:
| Q |
146 |
ggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccactaaatcctcca |
245 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||| | ||| || || ||||| | ||||||| |
|
|
| T |
2920962 |
ggattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctcca |
2921061 |
T |
|
| Q |
246 |
cctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccccttctttagtctctt |
345 |
Q |
| |
|
| |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||| ||||||| | ||||| |
|
|
| T |
2921062 |
catccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagtagtgtgccaaatcaaccaaaaatccttcttatgcctctt |
2921161 |
T |
|
| Q |
346 |
ggaagttac-ttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaa |
444 |
Q |
| |
|
|| || | ||| | |||||||| | | || || ||||||||||||| ||||||| ||| |||||| | ||||||||||| || | |||||| ||||| |
|
|
| T |
2921162 |
cga--ttccattcaccattccaacaaacaaaatgagcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaa |
2921259 |
T |
|
| Q |
445 |
cgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaagaagggacgaattcggggctaagatgtgacga |
544 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||| |||| |||| |||| || ||||||||| | ||| || ||| || ||||| || ||| |
|
|
| T |
2921260 |
gaaggaaacatcacaatgtaagaataggtgggtagatgtttccggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcga |
2921359 |
T |
|
| Q |
545 |
tttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagccggactcatccaaagtagaga |
639 |
Q |
| |
|
| |||||||| || | || | || |||||||| ||||| | ||| || || ||||||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
2921360 |
atggcgagattaactctagtggggattcgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaattagaga |
2921454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 18246572 - 18246662
Alignment:
| Q |
146 |
ggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccacta |
236 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||| || |||| ||||| |
|
|
| T |
18246572 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
18246662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 568 - 652
Target Start/End: Complemental strand, 1033936 - 1033850
Alignment:
| Q |
568 |
aatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagccggactcatccaaagt--agagaaaaccccctcatt |
652 |
Q |
| |
|
||||||||||||||| || | ||| || |||||||| |||||||| |||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
1033936 |
aatacgatcaaggagcaaggaccaagagaacgccacaactttggaaggagccggactcttccaaagtgcggaaaaaaccccctcatt |
1033850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 10232820 - 10232769
Alignment:
| Q |
147 |
gattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaa |
198 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||| | ||||||||| |
|
|
| T |
10232820 |
gattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaa |
10232769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 145 - 632
Target Start/End: Complemental strand, 36989089 - 36988602
Alignment:
| Q |
145 |
aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccactaaatcctcc |
244 |
Q |
| |
|
||||||||| ||||||| || ||||||||||| |||||||| || ||||||||| ||||||||||||||||| |||||| || | ||||| |||||| |
|
|
| T |
36989089 |
aggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcactatttcctcc |
36988990 |
T |
|
| Q |
245 |
acctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccccttctttagtctct |
344 |
Q |
| |
|
|| | |||| || | || || || ||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||||| || || || |||| |
|
|
| T |
36988989 |
acattcttccttagattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagtagcatgccaaatcaaccaaaaccctttattaagcctct |
36988890 |
T |
|
| Q |
345 |
tggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaa |
444 |
Q |
| |
|
| | | ||||| |||||||||| ||| || || ||||| | |||||||||||| | |||||||||||| | ||||||||| || | |||||||| || |
|
|
| T |
36988889 |
tcggcatcacttcactattccaacaatcaaaatggacaaaaaggttatgtggagtgataaaattaatctccaaccaattcaaaatccggcgccaaatcaa |
36988790 |
T |
|
| Q |
445 |
cgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaagaagggacgaattcggggctaagatgtgacga |
544 |
Q |
| |
|
||||||| |||||||||||| || | ||| ||||||||||||| ||||| |||| | |||||||| | ||| || || | ||||||||| ||| |
|
|
| T |
36988789 |
agaggaaatatcacaatgtaaaaataaatgtgtagatgtctccggctgccttccacacataacacaaaggggagacacatccgaaggtaagatgtggcga |
36988690 |
T |
|
| Q |
545 |
tttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagccggactcatccaaa |
632 |
Q |
| |
|
| |||||||| | || || | || |||||||||||||| | |||||| |||||||| ||||| || |||||||||||| |||||| |
|
|
| T |
36988689 |
atagcgagattatcttttgtagggattcgatcaaggagtaaggaccacgagaacgccaccactttcgatggagccggactcttccaaa |
36988602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 632
Target Start/End: Original strand, 42460101 - 42460612
Alignment:
| Q |
123 |
ttcatcttctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgt |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||| || |||||||||| || |||| |||| |||||||| |||| |
|
|
| T |
42460101 |
ttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccacacccaagacaccgc |
42460200 |
T |
|
| Q |
220 |
tttgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatc |
319 |
Q |
| |
|
||| |||||||||||||| ||| | || |||||| || | ||||| |||| ||||||||||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
42460201 |
tttaatctcatccactaactccccaacatccttctctttttgattgaaaatccgggcatttctttccttccaaatcaaccaaatagtggcatgccaaatc |
42460300 |
T |
|
| Q |
320 |
aaccaaaaccccttctttagtctcttggaagttacttcgctattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagcc |
419 |
Q |
| |
|
||| |||| || ||| | | || | || || || ||||||||| || || ||| ||||||| ||||| || |||| |||||| || | |||| |
|
|
| T |
42460301 |
aacaaaaaacctttcctaatccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcattccgagcc |
42460400 |
T |
|
| Q |
420 |
aattcaatatgccacgccaaattaacgaggaaacatcacaatgtaagaaaagatgagtagatgtctccgcttgcctcccacgtaacacacaaagaaggga |
519 |
Q |
| |
|
|||| || || |||||||||||||| ||||| | ||||||||| || || || || ||||| ||||| | | | |||| || |||||||| | ||| |
|
|
| T |
42460401 |
aatttaa-ataccacgccaaattaaagaggagaaatcacaatgcaaaaagaggtgggtagaagtctcaacacacattccacacaaaacacaaagtaagga |
42460499 |
T |
|
| Q |
520 |
cgaattcggggctaagatgtgacgatttgcgagattgaccttcgtcgaaatacgatcaaggagtaacgcccacgaaaacgccactactttggacggagcc |
619 |
Q |
| |
|
|| | ||| | || ||||||||| ||||||||| ||||||| | ||| | ||||||||||| ||||| || |||| |||||||||||| |||||| |
|
|
| T |
42460500 |
cgcactcgaatccaaaatgtgacgaaatgcgagattatccttcgtaggaatgcaatcaaggagtagtgcccaagagaacgtcactactttggaaggagcc |
42460599 |
T |
|
| Q |
620 |
ggactcatccaaa |
632 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
42460600 |
ggactcttccaaa |
42460612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 31234771 - 31234861
Alignment:
| Q |
146 |
ggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccacta |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||| || |||| ||||| |
|
|
| T |
31234771 |
ggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
31234861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 123 - 327
Target Start/End: Complemental strand, 2282328 - 2282121
Alignment:
| Q |
123 |
ttcatcttctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgt |
219 |
Q |
| |
|
||||||||||||||||||| || ||| ||| ||||||| |||| |||||||| || ||| |||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
2282328 |
ttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaaccgc |
2282229 |
T |
|
| Q |
220 |
tttgatctcatccactaaatcctccacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatc |
319 |
Q |
| |
|
||| |||||||||||||||| || || ||||| || |||||||| |||||| |||| ||||| |||||||| |||||||||| | ||||||||| |
|
|
| T |
2282228 |
tttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttctttccaaattaaccaaattgtgacatgccaaatc |
2282129 |
T |
|
| Q |
320 |
aaccaaaa |
327 |
Q |
| |
|
||| |||| |
|
|
| T |
2282128 |
aacaaaaa |
2282121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 16989665 - 16989575
Alignment:
| Q |
146 |
ggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccacta |
236 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||| || |||| ||||| |
|
|
| T |
16989665 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
16989575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 479
Target Start/End: Complemental strand, 2282087 - 2281968
Alignment:
| Q |
360 |
tattccaacgatcgaattgcacaaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaacgaggaaacatcaca |
459 |
Q |
| |
|
||||| ||| ||| |||||||||||||| ||||| ||||| | |||||| || | |||||||| || || | |||||||||| ||||| |||||||| |
|
|
| T |
2282087 |
tattctaacaatcaaattgcacaaacaaattatgaggagtgataaaattgattccgagccaatttaaaatccgacgccaaatttgtgaggagacatcaca |
2281988 |
T |
|
| Q |
460 |
atgtaagaaaagatgagtag |
479 |
Q |
| |
|
|||||| || || ||||||| |
|
|
| T |
2281987 |
atgtaaaaagaggtgagtag |
2281968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 53553650 - 53553728
Alignment:
| Q |
123 |
ttcatcttctatttaggcactc---aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaa |
198 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
53553650 |
ttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctactcaa |
53553728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 51042220 - 51042156
Alignment:
| Q |
266 |
aagatccttgcatttctttccttccaaatcgaccaaattgtcgcgtgccaaatcaaccaaaaccc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
51042220 |
aagatccttgcatttctttccttccaaatcatccaaattgatgcgtgccaaatcaaccacaaccc |
51042156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 1259319 - 1259409
Alignment:
| Q |
146 |
ggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccacta |
236 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||| || |||| ||||| |
|
|
| T |
1259319 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
1259409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 37242607 - 37242697
Alignment:
| Q |
146 |
ggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaagaaaccgttttgatctcatccacta |
236 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| || ||||||||| ||||||||||||||| || ||| || |||| ||||| |
|
|
| T |
37242607 |
ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta |
37242697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 1747 - 1815
Alignment:
| Q |
145 |
aggattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaacgtccaaacccaaga |
213 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||| | |||||||||| ||||| |||||| |
|
|
| T |
1747 |
aggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga |
1815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 9543 - 9492
Alignment:
| Q |
147 |
gattccaagtccactcatgaaagaggaaagaggctatctttaatctactcaa |
198 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||| | ||||||||| |
|
|
| T |
9543 |
gattccaaatccactcataaaagaggaaagaagctatcttcagtctactcaa |
9492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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