View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_20 (Length: 413)
Name: NF11599_low_20
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 27128078 - 27128448
Alignment:
| Q |
18 |
aataacgtggtcacacaaaaacgagaatcataaactttcttaagaccataaattgccaccacatgtggttgtaaagtagatgctatgaatgtcaactgac |
117 |
Q |
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| T |
27128078 |
aataacgtggtcaaacaaaaacaagaatcataaactttcttaagaccataaattgccaccacatgtggttgtaaagtagatgctatgaatgtcaactgac |
27128177 |
T |
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| Q |
118 |
ggaagggatcataaaagatgtccaccacatgtggttctaaagtagatcactctgattgtcaaaacaattcatgatgagtacaaatactcttactcttatt |
217 |
Q |
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| T |
27128178 |
ggaggggatcataaaagatgtccaccacatgtggttctaaagtaggtcactctgcttgtcaaaacaattcatgatgagtacaaa------tacttttatt |
27128271 |
T |
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| Q |
218 |
ttcgatcacgaaatgtttacatctttcatgtcttttttccattttaaccttctgcgcgttaatccgacatgcttcaactctccaagagcttcaaagttag |
317 |
Q |
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| T |
27128272 |
ttcgatc-----gtgtttacatctttcgtatcttttttctgttttaaccttttgtgcgttaatccaccatgctttaattctccaagagcttcaaagttag |
27128366 |
T |
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| Q |
318 |
aaactattttgatcaacggagtgcatgataataaactattctgtattttctctatatttaagaattattatgcctacttatt |
399 |
Q |
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||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||| |||||| ||||| |
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| T |
27128367 |
aaactattttgatcaacggagtgcacaataataaactattttatgatttctctatatttaagaattattgtgcctatttatt |
27128448 |
T |
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