View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_24 (Length: 380)
Name: NF11599_low_24
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 1038675 - 1038359
Alignment:
| Q |
17 |
catgtagaagatcactatttgtacaggtatcttatctttattcttaacattgctttaaatattgtttaacattggtgtgcctagttctgctgcctctcaa |
116 |
Q |
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| T |
1038675 |
catgtagaagatcactatttgtacaggtatcttatctttattcttaacattgctttaaatattgtttaacattggtgtgcctagttctgcagcctctcaa |
1038576 |
T |
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| Q |
117 |
tttgaaaagactgtcttggatcatgtgtattgcaacaaaatcttaatagaacatggagaaaatggtgcattccaatttcttgcacaaaaaacaaccatgt |
216 |
Q |
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| T |
1038575 |
tttgaaaagactgtcttggatcatgtgtattgcaacaaaatcttaatagaacatggagaaaatggtgcattccaatttcttgcacaaaaaacaaccatgt |
1038476 |
T |
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| Q |
217 |
tctctcctgataagcatctcctgatgtcttgttagaacataatgtgccggtttacaaggtggtggtgcaaaagccaggagagtttgtcatcacctttcca |
316 |
Q |
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| T |
1038475 |
tctctcc--------------tgatgtcttgttagaacataatgtgccggtttacaaggtggtggtgcaaaagccaggagagtttgtcatcacctttcca |
1038390 |
T |
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| Q |
317 |
aattcatatcatgccagatttagtcatggta |
347 |
Q |
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| T |
1038389 |
aattcatatcatgccggatttagtcatggta |
1038359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 89 - 347
Target Start/End: Original strand, 14155551 - 14155792
Alignment:
| Q |
89 |
tggtgtgcctagttctgctgcctctcaatttgaaaagactgtcttggatcatgtgtattgcaacaaaatcttaatagaacatggagaaaatggtgcattc |
188 |
Q |
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| T |
14155551 |
tggtgtgcctggttctgcaacctctcaaattgaaaagactgtcttggatcatgtttattgcaacaaagtcttgatagaacatggagagaatggggcattc |
14155650 |
T |
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| Q |
189 |
caatttcttgcacaaaaaacaaccatgttctctcctgataagcatctcctgatgtcttgttagaacataatgtgccggtttacaaggtggtggtgcaaaa |
288 |
Q |
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| T |
14155651 |
caatttcttgcacaaaaaacaaccatgttc--------------tctcctgatgtcttgttagaacataatgtgccggtttacaa---ggcggtgcaaaa |
14155733 |
T |
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| Q |
289 |
gccaggagagtttgtcatcacctttccaaattcatatcatgccagatttagtcatggta |
347 |
Q |
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| T |
14155734 |
gctaggagagtttgttatcacctttccaaattcatatcatgctggatttagtcatggta |
14155792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 93 - 347
Target Start/End: Original strand, 14139900 - 14140137
Alignment:
| Q |
93 |
gtgcctagttctgctgcctctcaatttgaaaagactgtcttggatcatgtgtattgcaacaaaatcttaatagaacatggagaaaatggtgcattccaat |
192 |
Q |
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| T |
14139900 |
gtgcctagctctgcagcctctcaatttgaaaagactgtcttgaatcatgtgtattgcaaaaaaatcttagcagaacatggagagaatggtgcattccaat |
14139999 |
T |
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| Q |
193 |
ttcttgcacaaaaaacaaccatgttctctcctgataagcatctcctgatgtcttgttagaacataatgtgccggtttacaaggtggtggtgcaaaagcca |
292 |
Q |
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| T |
14140000 |
ttcttgcacaaaaaacaaccatgttc--------------cctcctaatgtcttgttacaacatgatgtgccggtttacaa---ggcggtgcaaaagcca |
14140082 |
T |
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| Q |
293 |
ggagagtttgtcatcacctttccaaattcatatcatgccagatttagtcatggta |
347 |
Q |
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| T |
14140083 |
ggagagtttgtcatcacctttcctaattcatatcatgctggatttagtcatggta |
14140137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 14139758 - 14139795
Alignment:
| Q |
17 |
catgtagaagatcactatttgtacaggtatcttatctt |
54 |
Q |
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| T |
14139758 |
catgtagaagatcactatttgtacaggtatattatctt |
14139795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 14155394 - 14155460
Alignment:
| Q |
17 |
catgtagaagatcactatttgtacaggtatcttatctttattcttaacattgctttaaatattgtttaacattg |
90 |
Q |
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|||| ||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |
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| T |
14155394 |
catgcagaagatcattatttgtacaggtatattatctt-------aacattgcttcaaatattgtttaacattg |
14155460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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