View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_30 (Length: 344)
Name: NF11599_low_30
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 169 - 325
Target Start/End: Original strand, 40799513 - 40799663
Alignment:
| Q |
169 |
tgacttcctaaaacaaacattcatatactagatctagaattgatattttctaaaacaggaaaatgatacataattttggtggaaaaggtctgaaagacag |
268 |
Q |
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| T |
40799513 |
tgacttcctaaaacaaacattcatatactag------aattgatattttctaaaacaggaaaatgatacataattttggtggaaaaggtctgaaagacag |
40799606 |
T |
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| Q |
269 |
attaaaacataaagaacgttgaaacaactaaattctgaatttagcaaacagctgaaa |
325 |
Q |
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| T |
40799607 |
attaaaacatgaagaacgttgaaacaactaaattctgaatttagcaaacagctgaaa |
40799663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 40799333 - 40799433
Alignment:
| Q |
1 |
ctaaaccaatggttaaaaggagaatagcaaactacccttccctggataagtaagactaataatttgtatgtgcatattaagtattctaaatttataatta |
100 |
Q |
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| T |
40799333 |
ctaaaccaatggttaaaaggagaatagcaaactacccttccctggataagtaagactaataatttgtatgtgtatattaagtattctaaatttataatta |
40799432 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
40799433 |
t |
40799433 |
T |
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