View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_4 (Length: 644)
Name: NF11599_low_4
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 633
Target Start/End: Complemental strand, 172424 - 171809
Alignment:
| Q |
18 |
ctttgcgcacagcttgttggatttgtctttcatgctccttaaggatctcttcaaggttatcctctcgaggcagaagtggtccagaatagttgagcatgtg |
117 |
Q |
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| T |
172424 |
ctttgcgcacagcttgttggatttgtctttcatgctccttaaggatctcttcaaggttatcctctcgaggcagaagtggtccagaatagttgagaatgtg |
172325 |
T |
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| Q |
118 |
gccatttttgggagcacaaccctgcaacaaacaacaaataaaagcaagtcattattagagagttccatagtcacaatcagaccatagtctcaacttctat |
217 |
Q |
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| T |
172324 |
gccatttttgggagcacaaccctgcaacaaacaacaaataaaagcaagtcattattagagagttccatagtcacaatcagaccatagtctcaacttctat |
172225 |
T |
|
| Q |
218 |
caagttcatcctcttccataatatcagagagttgcatgtagttctgactccaaaataatagaacaattgcacaaattagtgtttgtaagtaatttcttta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172224 |
caagttcatcctcttccataatatcagagagttgcatgtagttctgactccaaaataatagaacaattgcacaaattagtgtttgtaagtaatttcttta |
172125 |
T |
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| Q |
318 |
ccatggcacgatcctttctgaacagatggaagtctttcttgcgtgaatgtttggttccatccagtaattgattggactcaccatcatccaaatgactata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172124 |
ccatggcacgatcctttctgaacagatggaagtctttcttgcgtgaatgtttggttccatccagtaattgattggactcaccatcatccaaatgactata |
172025 |
T |
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| Q |
418 |
tctcgtatcaaactgatcctctaaccactgtgagttcaaactacagtctccactcatatcaattcgtgaatcacctcgaattgcaactgaattagaaaat |
517 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
172024 |
tctcatatcaaactgatcctctaaccactgtgagttcaaactacagtctccactcatatcaagttgtgaatcacctcgaattgcaactgaattagaaaat |
171925 |
T |
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| Q |
518 |
cttgacaattgtgcagtactaccgtgccaataagaattttgttttctcaattcaatttttcttgatgtgaaaacacgatcagggccagaaagagcagctt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
171924 |
cttgacaattgtgcagtactaccgtgccaataagaattttgttttctcaattcaatttttcttgatgtgaaaacacgatcagggccaggaagagcagctt |
171825 |
T |
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| Q |
618 |
cctctttcaaattcat |
633 |
Q |
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|||||||||||||||| |
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| T |
171824 |
cctctttcaaattcat |
171809 |
T |
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