View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_42 (Length: 292)
Name: NF11599_low_42
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 37324585 - 37324305
Alignment:
| Q |
1 |
tgatgaccatggcattcactgatggacattttaatggaagcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37324585 |
tgatgaccatggcattcactgatggacattttaatggaagcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccat |
37324486 |
T |
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| Q |
101 |
agttggtggaaccggggcatttcgtttcgtacgtgggtatgctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37324485 |
agttggtggaaccggggcatttcgtttcgtacgtggatatgctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgac |
37324386 |
T |
|
| Q |
201 |
atatttgtgttccattattagttaggcataggtgcttcataaaagtagtgattattttacatttattattattttcttctt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
37324385 |
atatttgtgttccattattagttaggcataggtgcttcataaaagtagagattattttacatttattattattttgttctt |
37324305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37320604 - 37320379
Alignment:
| Q |
1 |
tgatgaccatggcattcactgatggacattttaatggaagcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccat |
100 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37320604 |
tgatgaccatgacattcactgatggacatttcaatggaagcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccat |
37320505 |
T |
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| Q |
101 |
agttggtggaaccggggcatttcgtttcgtacgtgggtatgctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgac |
200 |
Q |
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||||||||||| ||||| |||||||| |||||||| |||||||| ||||| |||||||| |||||||| || |||||||||||| |||| || |||||| |
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| T |
37320504 |
tgttggtggaactggggcttttcgttttgtacgtggttatgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgac |
37320405 |
T |
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| Q |
201 |
atatttgtgttccattattagttagg |
226 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
37320404 |
atatttatgttccattattagttagg |
37320379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37317025 - 37316800
Alignment:
| Q |
1 |
tgatgaccatggcattcactgatggacattttaatggaagcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccat |
100 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37317025 |
tgatgaccatggcattcactgatggagatttcaatggaagcacacttagcatattgggtagaaatatgatcatgagtgaacctgttagagaaatggccat |
37316926 |
T |
|
| Q |
101 |
agttggtggaaccggggcatttcgtttcgtacgtgggtatgctcaggctaagttttattcggttgattatacaaaaggagatgccgttgtagaatatgac |
200 |
Q |
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||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||| |||| || ||||| |
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| T |
37316925 |
tgttggtggaactggggcttttcgttttgtacgtgggtatgctcaagctaaattttattccgttgattacactaaaggagatgccattgtggagtatgat |
37316826 |
T |
|
| Q |
201 |
atatttgtgttccattattagttagg |
226 |
Q |
| |
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|||| || |||||||||||| |||| |
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| T |
37316825 |
gtattcgtattccattattagctagg |
37316800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 37306651 - 37306524
Alignment:
| Q |
30 |
tttaatggaagcacacttagcatattgggtagaaacatgatcatgagtgaacctgttagagaaatggccatagttggtggaaccggggcatttcgtttcg |
129 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||| || | || | |
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| T |
37306651 |
tttaatggaagcacacttagtatattggctaggaacatgatcgtgagtgaacctattagagaaatgcctattgttggtggaactggggctttcagatttg |
37306552 |
T |
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| Q |
130 |
tacgtgggtatgctcaggctaagtttta |
157 |
Q |
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| ||||| |||||||| || |||||||| |
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| T |
37306551 |
ttcgtggttatgctcaagccaagtttta |
37306524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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