View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_43 (Length: 292)
Name: NF11599_low_43
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 31127362 - 31127093
Alignment:
| Q |
17 |
agttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127362 |
agttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaat |
31127263 |
T |
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| Q |
117 |
gattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31127262 |
gattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggc-gagtcctcttacttcagcagcagcttcttttaaccgtcgc |
31127164 |
T |
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| Q |
217 |
tctgatccaacatttaatattttcttgactttccatagaaatggaatcgctgcatttaacctctctctgct |
287 |
Q |
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| T |
31127163 |
tctgatccaacatttaatattttcttcactttccatagaaatggaatcgctgcatttaacctctcactgct |
31127093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 31078044 - 31077796
Alignment:
| Q |
17 |
agttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaat |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| || |||| || ||| | | |
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| T |
31078044 |
agttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaact |
31077945 |
T |
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| Q |
117 |
gattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgc |
216 |
Q |
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| T |
31077944 |
gattccaaagttgctttttctttaagctcttttttcttttccctaacgattcttgtagc-aagtcctcttacttcagcgacggcttctttcaatcgtcgc |
31077846 |
T |
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| Q |
217 |
tctgat-ccaacatttaatattttcttgactttccatagaaatggaatcgc |
266 |
Q |
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| T |
31077845 |
tc-gatccctatgtttaatattttcttcactttccatatcaatggaatcgc |
31077796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 48 - 287
Target Start/End: Complemental strand, 31129011 - 31128773
Alignment:
| Q |
48 |
attacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcct |
147 |
Q |
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|||||||||||||| |||||||||| |||||||| | |||| || ||||| ||||||| |||||||||||||| |||||||||| ||| ||| | |
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| T |
31129011 |
attacaatatcaactgcaaaagattcttctgaatgtgcgtaactcaagcgtcgtggtagaataaccaatgattccaacactgatttttctacaaactctt |
31128912 |
T |
|
| Q |
148 |
ttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgatccaacatttaatattttcttgactt |
247 |
Q |
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| T |
31128911 |
ttttcttttccctaacgattcttgtggc-gagtcctcttacttcaacgacggcttcttttagccgtttcttggatccaacatttaatattttcttcactt |
31128813 |
T |
|
| Q |
248 |
tccatagaaatggaatcgctgcatttaacctctctctgct |
287 |
Q |
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|||||||||||||||| || ||||||||||||| ||||| |
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| T |
31128812 |
tccatagaaatggaatggcatcatttaacctctcgctgct |
31128773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 31132070 - 31131826
Alignment:
| Q |
17 |
agttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaat |
116 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||| || | |||||||| |
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| T |
31132070 |
agttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaaaatcgcgacaaaatatccacc |
31131971 |
T |
|
| Q |
117 |
gattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgc |
216 |
Q |
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|||||||| | | ||||||| |||||| ||||||||||||||||| ||| ||||||| ||| || ||||||||||| |||||||||| ||||||||| |
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| T |
31131970 |
gattccaaggtttccttttctttaagctcttttttcttttccctaacaatttttgtggc-gagcccccttacttcagcgacagcttctttcaaccgtcgc |
31131872 |
T |
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| Q |
217 |
tctgatccaacatttaatattttcttgactttccatagaaatggaa |
262 |
Q |
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|| | ||||| |||| | ||| || |||||||||| |||||||| |
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| T |
31131871 |
tcgggtccaatgtttaggaattttttcactttccataaaaatggaa |
31131826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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