View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_45 (Length: 286)
Name: NF11599_low_45
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 15094697 - 15094890
Alignment:
| Q |
40 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccagctgtaattctgttgtgacag |
139 |
Q |
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| T |
15094697 |
tgttacaaaataaagaggaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccaactgtaattctgtt-tgacag |
15094795 |
T |
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| Q |
140 |
ttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattca |
235 |
Q |
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| T |
15094796 |
ttagagta-atagtgctactgtgtagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattca |
15094890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 15094894 - 15094983
Alignment:
| Q |
190 |
ccttcattagcttataaataagtgcttacacattgtaacccattcactcaattcaataat----ctttctcctttttccattctcttcat |
275 |
Q |
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| T |
15094894 |
ccttcattagcttataaataagtgcttacacattgtaacccattcattccattcaataataaaactttctccattttctattctcttcat |
15094983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 18291714 - 18291879
Alignment:
| Q |
20 |
gtagccttcctattgatgtatgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccag |
119 |
Q |
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| T |
18291714 |
gtagccttcctattgatgtatgttacaaaataaagaagatgaag---ttacttgtgatgcaagtaacttgagcaaaccctaacaaactgtactaggccag |
18291810 |
T |
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| Q |
120 |
ctgtaattctgttgtgacagttagagtagatagtgttactgtgcagttagcttatgatagatataatgt |
188 |
Q |
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| T |
18291811 |
ctgtatttctgttgtgacagttagagtagatagtgttactgtgtagttagcttatgatagatataatgt |
18291879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 18293805 - 18293901
Alignment:
| Q |
182 |
ataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcactcaattc---aataatctttctcctttttccattctcttcat |
275 |
Q |
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| T |
18293805 |
ataatgtaccttcattagcttataaataagtgcttacacattgtaactcattcatacaattcaataataatctttctcccttttccattctcttcat |
18293901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 13892359 - 13892566
Alignment:
| Q |
40 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccagctgtaattctgttgtgacag |
139 |
Q |
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|||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||||| ||||| ||||||| |||||| |
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| T |
13892359 |
tgttacaaaataaagaggaagaagaacttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaatatgccaactgtatttctgttatgacag |
13892458 |
T |
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| Q |
140 |
ttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcactca |
239 |
Q |
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| T |
13892459 |
ttagatgag-ttgtgttactatgtagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgcacattgtaacagattcattc- |
13892556 |
T |
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| Q |
240 |
attcaataat |
249 |
Q |
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|||||||||| |
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| T |
13892557 |
attcaataat |
13892566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 13887702 - 13887890
Alignment:
| Q |
40 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccagctgtaattctgttgtga-ca |
138 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||| || |
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| T |
13887702 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaacatgccagctgtatttctgttatgacca |
13887801 |
T |
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| Q |
139 |
gttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaac |
228 |
Q |
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| T |
13887802 |
gttagaggag-ttgtgttactatttagttagtgtatgatggatataatgtactctcattagcttataaataggtgcttgtacattgtaac |
13887890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 27816210 - 27816410
Alignment:
| Q |
40 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactt-tactatgccagctgtaattctgttgtgaca |
138 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
27816210 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
27816308 |
T |
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| Q |
139 |
gttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcactc |
238 |
Q |
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||||||| || | ||| |||| || |||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |
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| T |
27816309 |
gttagaggag-ttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatagatgcttacacattgtaactaattcattc |
27816407 |
T |
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| Q |
239 |
aat |
241 |
Q |
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||| |
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| T |
27816408 |
aat |
27816410 |
T |
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