View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_48 (Length: 268)
Name: NF11599_low_48
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 48237346 - 48237099
Alignment:
| Q |
1 |
aggcttgaattgaagcaaactatggacatgtacagctcagcttgcaaacaagcaatatcagcaaaaaatcaggtgatgtgaattatgcaataggaacaaa |
100 |
Q |
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| T |
48237346 |
aggcttgaattgaagcaaactatggacatgtacagctcagcttgcaaacaagcaatatcagcaaaaaatcaggtgatgtgaattatgcaataggaacaaa |
48237247 |
T |
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| Q |
101 |
gtgctagtaacaattactaaacaaaataccaagtaattataaaaatcataaataagtttcattattgatcatgatgctttaaattaagtgatggtaggaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48237246 |
gtgctagtaacaattactaaacaaaatactaagtaattataaaaatcataaataagtttcattattgatcatgatgctttaaattaagtgatggtaggaa |
48237147 |
T |
|
| Q |
201 |
agaatgaactcttaagtttgtcaaatgaaaattatgaaacgactctaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48237146 |
agaatgaactcttaagtttgtcaaatgaaaattatgaaacgactctaa |
48237099 |
T |
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