View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_49 (Length: 267)
Name: NF11599_low_49
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 44817783 - 44818009
Alignment:
| Q |
19 |
catcaatatttattttgagggtcgtcttcaacactctataagccccgtttaaggccaac-ttagtgacggttgaatcgcgacaaatgtttaaggaatatt |
117 |
Q |
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| T |
44817783 |
catcaatatttattttgagggtcgtcttcaacactctataagccccgtgtagggcccaccttagtgactgttgaatcgcgacaaatgtttaaggaatgtt |
44817882 |
T |
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| Q |
118 |
actcttctcactttatataactcagccgcagttaactatattttgatttctacctaagatattttttagagcggtttaatcatctttaaatcaatttaac |
217 |
Q |
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| T |
44817883 |
actcttctcactttacataactcaactgtagttaactatgttttgatttctacctaagatattttttagagcggtttaatcatctttaaatcaatttaac |
44817982 |
T |
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| Q |
218 |
caatcttacaagtgttcaacgacactt |
244 |
Q |
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| T |
44817983 |
caatcttacaagtgttcaacgacactt |
44818009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 16671797 - 16671869
Alignment:
| Q |
175 |
gatattttttagagcggtttaatca-tctttaaatcaatttaaccaatcttacaagtgttcaacgacacttaa |
246 |
Q |
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| T |
16671797 |
gatattttttagagcaattcaatcaatttttaaatcaatttaaccgatcttaaaagtgttgaaccacatttaa |
16671869 |
T |
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