View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_low_50 (Length: 267)

Name: NF11599_low_50
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_low_50
NF11599_low_50
[»] scaffold0189 (2 HSPs)
scaffold0189 (96-236)||(13569-13710)
scaffold0189 (15-94)||(13023-13102)
[»] chr2 (7 HSPs)
chr2 (20-94)||(6592074-6592148)
chr2 (20-94)||(4536680-4536754)
chr2 (15-72)||(40987237-40987294)
chr2 (20-94)||(14511569-14511642)
chr2 (15-94)||(1360286-1360365)
chr2 (20-67)||(36360335-36360382)
chr2 (18-67)||(34225895-34225944)
[»] chr1 (15 HSPs)
chr1 (18-94)||(12851850-12851926)
chr1 (20-94)||(6377246-6377320)
chr1 (15-67)||(28751363-28751415)
chr1 (15-72)||(84473-84530)
chr1 (18-67)||(5317535-5317584)
chr1 (19-67)||(24040983-24041031)
chr1 (15-67)||(44583916-44583968)
chr1 (15-67)||(50349812-50349864)
chr1 (15-61)||(37437358-37437404)
chr1 (15-88)||(15647028-15647101)
chr1 (15-60)||(15698705-15698750)
chr1 (34-67)||(45749473-45749506)
chr1 (15-67)||(12002391-12002443)
chr1 (15-67)||(40060861-40060913)
chr1 (96-124)||(42787850-42787878)
[»] chr5 (14 HSPs)
chr5 (15-72)||(36660566-36660623)
chr5 (15-88)||(4371475-4371548)
chr5 (15-67)||(166604-166656)
chr5 (15-67)||(4751485-4751537)
chr5 (20-67)||(12992199-12992246)
chr5 (20-73)||(8960995-8961048)
chr5 (15-67)||(4742221-4742273)
chr5 (15-67)||(34919881-34919933)
chr5 (15-59)||(43257815-43257859)
chr5 (20-67)||(13066850-13066897)
chr5 (15-94)||(38982109-38982188)
chr5 (96-125)||(4456387-4456416)
chr5 (18-70)||(24436498-24436550)
chr5 (15-67)||(36783501-36783553)
[»] chr4 (17 HSPs)
chr4 (15-94)||(29840170-29840249)
chr4 (15-72)||(36805408-36805465)
chr4 (15-94)||(30492835-30492914)
chr4 (20-94)||(38692496-38692570)
chr4 (15-61)||(22212489-22212535)
chr4 (17-67)||(34360147-34360197)
chr4 (20-66)||(45049842-45049888)
chr4 (18-67)||(30022209-30022258)
chr4 (15-67)||(32140834-32140886)
chr4 (18-66)||(45520419-45520467)
chr4 (36-94)||(31987410-31987468)
chr4 (25-67)||(37445802-37445844)
chr4 (96-125)||(45250331-45250360)
chr4 (20-93)||(54092065-54092138)
chr4 (96-125)||(56513446-56513475)
chr4 (15-67)||(32140944-32140996)
chr4 (15-67)||(42672531-42672583)
[»] chr7 (7 HSPs)
chr7 (20-86)||(19920243-19920309)
chr7 (15-94)||(40298957-40299036)
chr7 (15-61)||(17869389-17869435)
chr7 (15-67)||(42121688-42121740)
chr7 (18-67)||(33056242-33056291)
chr7 (22-67)||(34733455-34733500)
chr7 (15-67)||(34002087-34002139)
[»] chr8 (13 HSPs)
chr8 (25-94)||(2803220-2803289)
chr8 (20-87)||(8382447-8382514)
chr8 (20-94)||(39970434-39970508)
chr8 (15-67)||(32326680-32326732)
chr8 (15-67)||(38329010-38329062)
chr8 (36-79)||(37185638-37185681)
chr8 (20-94)||(156338-156412)
chr8 (36-93)||(2812895-2812952)
chr8 (15-59)||(32661449-32661493)
chr8 (96-127)||(34908671-34908702)
chr8 (20-66)||(41414978-41415024)
chr8 (15-72)||(45187251-45187308)
chr8 (15-67)||(6839352-6839404)
[»] chr3 (15 HSPs)
chr3 (15-67)||(44648365-44648417)
chr3 (20-94)||(4392014-4392088)
chr3 (15-67)||(25061839-25061891)
chr3 (15-67)||(27483148-27483200)
chr3 (15-67)||(31290929-31290981)
chr3 (15-94)||(16240686-16240765)
chr3 (14-67)||(2662446-2662499)
chr3 (16-72)||(38165617-38165673)
chr3 (15-67)||(42857046-42857098)
chr3 (20-67)||(43599508-43599555)
chr3 (15-93)||(35099330-35099408)
chr3 (20-61)||(40049026-40049067)
chr3 (15-67)||(83441-83493)
chr3 (15-67)||(647547-647599)
chr3 (35-67)||(41287224-41287256)
[»] chr6 (3 HSPs)
chr6 (15-94)||(30627200-30627279)
chr6 (15-67)||(12828636-12828688)
chr6 (15-70)||(8052477-8052532)
[»] scaffold0060 (1 HSPs)
scaffold0060 (15-93)||(31663-31741)
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-94)||(158209-158287)
[»] scaffold0072 (1 HSPs)
scaffold0072 (18-67)||(12040-12089)
[»] scaffold0160 (1 HSPs)
scaffold0160 (96-126)||(25751-25781)


Alignment Details
Target: scaffold0189 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 13569 - 13710
Alignment:
Q  96 atacaatttgggacggagggagtagtattttagacaa-catggaacaaatagttacaaacagccccaaagtctacaagctttgttaaggaaggaaaccga 194  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13569 atacaatttgggacggaggaagtagtattttagacaaacatggaacaaatagttacaaacagccccaaagtccacaagctttgttaaggaaggaaaccga 13668  T
Q  195 aacaatttgtttgtttttaataaagaatgctatttttctttg 236  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  13669 aacgatttgtttgtttttaataaagaatgctatttttctttg 13710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 13023 - 13102
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  13023 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaaatgcttaagaaaaagacaaaattaaag 13102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 6592148 - 6592074
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||    
T  6592148 attaaggaatgaaatgaaataatcattagacataacacttttactaaattgtcaaagaaaaagacaaacttaaag 6592074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 4536754 - 4536680
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||||||||||| | |||||||||||||||||| ||||||| ||||| || | |||||||||||||| ||||||    
T  4536754 attaaggaatgaaatgaaataatcattagacatatcacttttactaaactgcccaagaaaaagacaaatttaaag 4536680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 40987237 - 40987294
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtc 72  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||| ||||| ||||    
T  40987237 cacatattaaggaatgaaatgaaataatcattagacataacacttttactaaattgtc 40987294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 14511642 - 14511569
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||||||||||| | |||||||||||||||||||| | |||  ||||||||  |||||||||||||| ||||||    
T  14511642 attaaggaatgaaatgaaataatcattagacataac-cctttattaaaatgttcaagaaaaagacaaatttaaag 14511569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 1360365 - 1360286
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| |||||| |||| | ||||||||||||||| ||| |||||||| ||||| ||   |||||||||||||| ||||||    
T  1360365 cacaaattaagtaatggaataaaataatcattagccatgacacttttactaaactgcacaagaaaaagacaaacttaaag 1360286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 36360335 - 36360382
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||| ||||||| | |||||||||||||||||||||||||| |||||    
T  36360335 attaaagaatgaaatgaaataatcattagacataacacttttactaaa 36360382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34225944 - 34225895
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||||| | ||||||||||||||||||| | |||| |||||    
T  34225944 agattaaggaatgaaatgaaataatcattagacataataattttactaaa 34225895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 12851926 - 12851850
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||||||||||||| |||||||||||||||  |||||||||||  ||||||| | |||||||||||||||||||||    
T  12851926 agattaaggaatgaaataaaataatcattaggtataacacttttaataaaatgcccaagaaaaagacaaaattaaag 12851850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 6377246 - 6377320
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||| || | |||||||||||||| ||||||    
T  6377246 attaaggaatgaaatgaaataatcattagacataacacttttactaaattgcccaagaaaaagacaaacttaaag 6377320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 28751363 - 28751415
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  28751363 cacagattaaggaatgaaataaaataatcattagacataacatttttactaaa 28751415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 84473 - 84530
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtc 72  Q
    |||||||||||||||  | | |||||||||||||||||||||||||| ||||||||||    
T  84473 cacagattaaggaattgaatgaaataatcattagacataacacttttactaaaatgtc 84530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 5317535 - 5317584
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  5317535 agattaaggaatgaaatgaaataatcattagacataacacttttactaaa 5317584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 24040983 - 24041031
Alignment:
Q  19 gattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||| | | |||||||||||||||||||||||||| |||||    
T  24040983 gattaaggaatggaatgaaataatcattagacataacacttttactaaa 24041031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 44583968 - 44583916
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| |||||| |||||| ||||||||||||||||||||||| |||| |||||    
T  44583968 cacaaattaagaaatgaaataaaataatcattagacataacaattttcctaaa 44583916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 50349812 - 50349864
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||| | | |||||||||||||||||||||||||| |||||    
T  50349812 cacaaattaaggaatggaatgaaataatcattagacataacacttttactaaa 50349864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 37437358 - 37437404
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacactttt 61  Q
    |||| ||||||||||||| | ||||| ||||||||||||||||||||    
T  37437358 cacatattaaggaatgaaatgaaatattcattagacataacactttt 37437404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 15647028 - 15647101
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaa 88  Q
    |||| ||||||||||| |   ||||| |||||||||||||||||||| || || || | |||||||||||||||    
T  15647028 cacaaattaaggaatgtaaagaaatattcattagacataacacttttactgaattgaccaagaaaaagacaaaa 15647101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 15698705 - 15698750
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttt 60  Q
    |||| |||||||||| || | |||||||||||||||||||||||||    
T  15698705 cacaaattaaggaataaaattaaataatcattagacataacacttt 15698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 45749473 - 45749506
Alignment:
Q  34 taaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||||||||||||| |||||    
T  45749473 taaaataatcattagacataacacttttactaaa 45749506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12002443 - 12002391
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | |||||||||| |||||||| |||||| |||||    
T  12002443 cacatattaaggaatgaaatgaaataatcatcagacataatacttttactaaa 12002391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 40060861 - 40060913
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| |||||| |||||| | ||||||| |||||||||||||||||| |||||    
T  40060861 cacatattaagaaatgaaatgaaataatgattagacataacacttttactaaa 40060913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 42787878 - 42787850
Alignment:
Q  96 atacaatttgggacggagggagtagtatt 124  Q
    |||||||||||||||||||||||||||||    
T  42787878 atacaatttgggacggagggagtagtatt 42787850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 36660623 - 36660566
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtc 72  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  36660623 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaaatgtc 36660566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 4371548 - 4371475
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaa 88  Q
    |||| ||||||||||| | | |||||||||||||||||| ||||||| ||||| || |||||||||||||||||    
T  4371548 cacaaattaaggaatggaatgaaataatcattagacatagcacttttactaaactgcctaagaaaaagacaaaa 4371475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 166604 - 166656
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||| |||||    
T  166604 cacagattaaggaatgaaatgaaataatcattagaaataacacttttactaaa 166656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4751485 - 4751537
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  4751485 cacatattaaggaatgaaatgaaataatcattagacataacacttttactaaa 4751537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 12992246 - 12992199
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  12992246 attaaggaatgaaatgaaataatcattagacataacacttttactaaa 12992199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 8960995 - 8961048
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtct 73  Q
    ||||||||||  | |||||||||||||||||||||||||||| ||||| |||||    
T  8960995 attaaggaatataataaaataatcattagacataacacttttactaaactgtct 8961048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4742221 - 4742273
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  4742221 cacatattaaggaatgaaatgaaataatcatcagacataacacttttactaaa 4742273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 34919933 - 34919881
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| ||||||||||||| |||||| || |||| |||||    
T  34919933 cacagattaaggaatgaaataaaataatcattggacatagcaattttactaaa 34919881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 43257815 - 43257859
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacactt 59  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||    
T  43257815 cacagattaaagaatgaaatgaaataatcattagacataacactt 43257859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 13066897 - 13066850
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  13066897 attaaggaatgaaatgaaataatcattagacacaacacttttactaaa 13066850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 38982109 - 38982188
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| ||||||||||||| | |||||||| | |||| ||||||||||  |||| || | |||||||||||||| ||||||    
T  38982109 cacaaattaaggaatgaaatgaaataatcttaagacgtaacacttttattaaactgcccaagaaaaagacaaacttaaag 38982188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 4456416 - 4456387
Alignment:
Q  96 atacaatttgggacggagggagtagtattt 125  Q
    ||||||||||||||||||||||||||||||    
T  4456416 atacaatttgggacggagggagtagtattt 4456387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 24436498 - 24436550
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatg 70  Q
    |||||||||||| || | |||||||||||||| ||||||||||| | ||||||    
T  24436498 agattaaggaataaaatgaaataatcattagatataacacttttaccaaaatg 24436550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 36783553 - 36783501
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||  ||||| | ||||||||||||||||||||| |||| |||||    
T  36783553 cacagattaagagatgaaatgaaataatcattagacataacatttttactaaa 36783501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 29840249 - 29840170
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| ||||||||||| | | |||||||||||||||||||||||||| ||||||||   |||||||||||||| ||||||    
T  29840249 cacaaattaaggaatggaatgaaataatcattagacataacacttttactaaaatgctcaagaaaaagacaaacttaaag 29840170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 36805408 - 36805465
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtc 72  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||    
T  36805408 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaactgtc 36805465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 30492914 - 30492835
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| ||||||||||| | | |||||||||||||||||||||||||| || || || | |||||||||||||| ||||||    
T  30492914 cacaaattaaggaatggaatgaaataatcattagacataacacttttactgaactgcccaagaaaaagacaaacttaaag 30492835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 38692570 - 38692496
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||||||||||| | |||||||||| | | ||||||||||| |||||||  | |||||||||||||||||||||    
T  38692570 attaaggaatgaaatgaaataatcatcaaagataacacttttactaaaatacccaagaaaaagacaaaattaaag 38692496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 22212535 - 22212489
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacactttt 61  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  22212535 cacatattaaggaatgaaatgaaataatcattagacataacactttt 22212489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 34360197 - 34360147
Alignment:
Q  17 cagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||| | |||||||||||||| ||||||||||| |||||    
T  34360197 cagattaaggaatgaaatgaaataatcattagatataacacttttactaaa 34360147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 45049888 - 45049842
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaa 66  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||    
T  45049888 attaaggaatgaaatgaaataatcattagacataacacttttcctaa 45049842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 30022258 - 30022209
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||||| |||||||||||||| | ||||||||||| |||||    
T  30022258 agattaaggaatgaaataaaataatcattatatataacacttttactaaa 30022209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 32140834 - 32140886
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | |||||||||||| ||||||||||||| |||||    
T  32140834 cacaaattaaggaatgaaatcaaataatcattaaacataacacttttactaaa 32140886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 45520419 - 45520467
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaa 66  Q
    |||||||| |||| | |||||||||||||||||||||||||||| ||||    
T  45520419 agattaagaaatggaataaaataatcattagacataacacttttactaa 45520467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 31987468 - 31987410
Alignment:
Q  36 aaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||||||||||||| ||||||||||| ||||| ||   |||||||||||||| ||||||    
T  31987468 aaataatcattagagataacacttttactaaactgctgaagaaaaagacaaatttaaag 31987410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 37445844 - 37445802
Alignment:
Q  25 ggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||| | |||||||||||||||||||||||||| |||||    
T  37445844 ggaatgaaatgaaataatcattagacataacacttttactaaa 37445802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 45250331 - 45250360
Alignment:
Q  96 atacaatttgggacggagggagtagtattt 125  Q
    ||||||||||||||||||||||||||||||    
T  45250331 atacaatttgggacggagggagtagtattt 45250360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 54092138 - 54092065
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaa 93  Q
    ||||||||||||| | ||||| |||||| |||||| |||||| | ||| || | |||||||||||||| |||||    
T  54092138 attaaggaatgaaatgaaatagtcattaaacataatacttttaccaaattgcccaagaaaaagacaaacttaaa 54092065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 56513475 - 56513446
Alignment:
Q  96 atacaatttgggacggagggagtagtattt 125  Q
    ||||||||||||||||||||||||||||||    
T  56513475 atacaatttgggacggagggagtagtattt 56513446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 32140944 - 32140996
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||| |||  | | |||||||||||||||||||||||||| |||||    
T  32140944 cacagattaagaaattgaatgaaataatcattagacataacacttttactaaa 32140996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 42672583 - 42672531
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||  | | |||||||||||||||||||||||||| |||||    
T  42672583 cacaaattaaggaatataatgaaataatcattagacataacacttttactaaa 42672531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 19920243 - 19920309
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaa 86  Q
    ||||||||||||| | ||||||||||||||||| |||||||| ||||| |||| |||||||||||||    
T  19920243 attaaggaatgaaatgaaataatcattagacatgacacttttactaaagtgtccaagaaaaagacaa 19920309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 40299036 - 40298957
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| ||||||||||||| | ||||||| ||| |||||||||||||| ||||| || | |||||||||||||| ||||||    
T  40299036 cacaaattaaggaatgaaatgaaataataattggacataacacttttactaaactgcccaagaaaaagacaaacttaaag 40298957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 17869435 - 17869389
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacactttt 61  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||    
T  17869435 cacagattaaggaatgaaatgaaataatcattagacataacactttt 17869389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 42121740 - 42121688
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||| |||||    
T  42121740 cacagattaaggaatgaaatcaaataatcattagacatatcacttttactaaa 42121688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 33056242 - 33056291
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||||| | |||||||||||| ||||||||||||| |||||    
T  33056242 agattaaggaatgaaatgaaataatcattaaacataacacttttactaaa 33056291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 34733500 - 34733455
Alignment:
Q  22 taaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||    
T  34733500 taagaaatgaaatgaaataatcattagacataacacttttactaaa 34733455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 34002087 - 34002139
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||| |||||| | ||||||||||| || ||||||| |||||||||    
T  34002087 cacagattaagaaatgaaatgaaataatcattggatataacacctttgctaaa 34002139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 2803220 - 2803289
Alignment:
Q  25 ggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||||||| | |||||||||||| |||||||||||||  |||| ||||||||||||||||||| ||||||    
T  2803220 ggaatgaaatgaaataatcattatacataacacttttattaaactgtctaagaaaaagacaaacttaaag 2803289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 8382447 - 8382514
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaa 87  Q
    ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || | ||||||||||||||    
T  8382447 attaaagaatgaaataaaataatcgttagacataacacttttactaaactgcccaagaaaaagacaaa 8382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 39970508 - 39970434
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    ||||| ||||||| | |||||||||||||||||| ||||||| ||||| || | |||||||||||||| ||||||    
T  39970508 attaaagaatgaaatgaaataatcattagacataccacttttactaaactgcccaagaaaaagacaaacttaaag 39970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 32326680 - 32326732
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||| |||||    
T  32326680 cacagattaaggaatgaaatgaaataatcattagacgtaacacttttactaaa 32326732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 38329010 - 38329062
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||| | | |||||||||||||||||||||||||| |||||    
T  38329010 cacagattaaggaatggaatgaaataatcattagacataacacttttactaaa 38329062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 37185638 - 37185681
Alignment:
Q  36 aaataatcattagacataacacttttgctaaaatgtctaagaaa 79  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  37185638 aaataatcattagacataacacttttactaaaatatctaagaaa 37185681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 156412 - 156338
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||||||| |||| | ||||||||||||||||||||||||||  |||| || | ||||||| |||||| ||||||    
T  156412 attaaggattgaaatgaaataatcattagacataacacttttattaaactgccgaagaaaaggacaaacttaaag 156338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 2812952 - 2812895
Alignment:
Q  36 aaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaa 93  Q
    |||||||||||||||||||||||||| ||||| || | |||||||||| ||| |||||    
T  2812952 aaataatcattagacataacacttttactaaactgcccaagaaaaagaaaaacttaaa 2812895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 32661493 - 32661449
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacactt 59  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||    
T  32661493 cacaaattaaggaatgaaataaaataatcattagacatatcactt 32661449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 127
Target Start/End: Complemental strand, 34908702 - 34908671
Alignment:
Q  96 atacaatttgggacggagggagtagtatttta 127  Q
    ||||||||||||||||||||||||||||||||    
T  34908702 atacaatttgggacggagggagtagtatttta 34908671  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 41415024 - 41414978
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaa 66  Q
    ||||||||||||| | ||||||||||||||| |||||||||| ||||    
T  41415024 attaaggaatgaaatgaaataatcattagacgtaacacttttactaa 41414978  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 45187251 - 45187308
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtc 72  Q
    |||||||||||||||  | | ||||||||||||||||| |||||||| ||||| ||||    
T  45187251 cacagattaaggaatataatgaaataatcattagacatgacacttttactaaactgtc 45187308  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 6839404 - 6839352
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||  |||| | | |||||||||||||||||||||||||| |||||    
T  6839404 cacagattaaaaaatggaatgaaataatcattagacataacacttttactaaa 6839352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 44648365 - 44648417
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  44648365 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaa 44648417  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 4392088 - 4392014
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||||| |||||| | ||||||| |||||||||||||||||| ||||| || | |||||||||||||| ||||||    
T  4392088 attaagaaatgaaatgaaataattattagacataacacttttactaaactgcccaagaaaaagacaaacttaaag 4392014  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 25061891 - 25061839
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  25061891 cacatattaaggaatgaaatgaaataatcattagacataacacttttactaaa 25061839  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 27483148 - 27483200
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  27483148 cacaaattaaggaatgaaatgaaataatcattagacataacacttttactaaa 27483200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 31290929 - 31290981
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||| |||||    
T  31290929 cacagattaaggaatgaaatgaaataattattagacataacacttttactaaa 31290981  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 16240765 - 16240686
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| |||| |||||||| | ||||||||||||||||||||| |||| |||||  | | |||||||||||||| ||||||    
T  16240765 cacaaattagggaatgaaatgaaataatcattagacataacatttttactaaacagcccaagaaaaagacaaacttaaag 16240686  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 2662446 - 2662499
Alignment:
Q  14 gcacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||| |||| || | |||||||||||||||||||||||||| |||||    
T  2662446 gcacagattaaagaatcaaatgaaataatcattagacataacacttttactaaa 2662499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 38165617 - 38165673
Alignment:
Q  16 acagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtc 72  Q
    ||||||||||||||| | | |||||||||||| ||||||||||||| ||||| ||||    
T  38165617 acagattaaggaatgtaatgaaataatcattaaacataacacttttactaaactgtc 38165673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 42857046 - 42857098
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||||| || | ||||||||||||||||||||| |||| |||||    
T  42857046 cacagattaaggaatcaaatgaaataatcattagacataacatttttactaaa 42857098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 43599508 - 43599555
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||| | ||||||||||||||||||| |||||| |||||    
T  43599508 attaaggaatgaaatgaaataatcattagacataatacttttactaaa 43599555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 35099330 - 35099408
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaa 93  Q
    |||| |||||| || ||| | |||||||||||||||||||||||||| ||| | ||   |||||||||||||| |||||    
T  35099330 cacaaattaagaaacgaaatgaaataatcattagacataacacttttactatactgctcaagaaaaagacaaacttaaa 35099408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 40049067 - 40049026
Alignment:
Q  20 attaaggaatgaagtaaaataatcattagacataacactttt 61  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  40049067 attaaggaatggaatgaaataatcattagacataacactttt 40049026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 83493 - 83441
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||||||||||| | || ||||||||||||| ||||||||| |||||    
T  83493 cacaaattaaggaatgaaatgaattaatcattagacacaacacttttactaaa 83441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 647547 - 647599
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||| |||||| | |||||||||||||| |||||| |||| |||||    
T  647547 cacagattaagaaatgaaatgaaataatcattagatataacagttttactaaa 647599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 41287256 - 41287224
Alignment:
Q  35 aaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||||||||||||||||| |||||    
T  41287256 aaaataatcattagacataacacttttactaaa 41287224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 30627279 - 30627200
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| ||||| ||||||| | |||||||||||||| ||||||||||| ||||| |||| |||||||| ||||| ||||||    
T  30627279 cacaaattaatgaatgaaatgaaataatcattagatataacacttttactaaagtgtccaagaaaaaaacaaatttaaag 30627200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 12828636 - 12828688
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    |||| ||||| ||||||| | |||||||||||||||||||||||||| |||||    
T  12828636 cacaaattaatgaatgaaatgaaataatcattagacataacacttttactaaa 12828688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 8052532 - 8052477
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatg 70  Q
    |||| |||||| |||||| | ||||||||||||||||||||||||||  |||||||    
T  8052532 cacaaattaagaaatgaaatgaaataatcattagacataacacttttattaaaatg 8052477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 31741 - 31663
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaa 93  Q
    |||| ||||| ||||||| | |||||||||||||| ||||||||||| ||||| |||| |||||||||| ||| |||||    
T  31741 cacaaattaacgaatgaaatgaaataatcattagagataacacttttactaaactgtccaagaaaaagataaacttaaa 31663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 158287 - 158209
Alignment:
Q  15 cacagattaaggaatgaagtaaaataatcattagacataacacttttgctaaaatgtctaagaaaaagacaaaattaaag 94  Q
    |||| ||||| ||||||| ||||||||| |||| | ||||||||||| |||||| ||| |||||||||||||| ||||||    
T  158287 cacaaattaaagaatgaaataaaataattattaaagataacacttttcctaaaaggtc-aagaaaaagacaaacttaaag 158209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12040 - 12089
Alignment:
Q  18 agattaaggaatgaagtaaaataatcattagacataacacttttgctaaa 67  Q
    ||||||||||||| | | |||||||||||||||||||||||||| |||||    
T  12040 agattaaggaatggaatgaaataatcattagacataacacttttactaaa 12089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 25781 - 25751
Alignment:
Q  96 atacaatttgggacggagggagtagtatttt 126  Q
    |||||||||||||||||||||||||||||||    
T  25781 atacaatttgggacggagggagtagtatttt 25751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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