View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_53 (Length: 252)
Name: NF11599_low_53
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 35907026 - 35906937
Alignment:
| Q |
152 |
taataacaatcaaaacttcaccttaattttt-gttcttgcctggtttggaacatgttccaccaatccaggtaggtaatttctacattcat |
240 |
Q |
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| T |
35907026 |
taataacaatcaaaacttcaccttaattttttgttcttgcctggtttggaacatgttccaccaatccaggtaggtaatttctacattcat |
35906937 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35907177 - 35907149
Alignment:
| Q |
1 |
ttctcaaccatgtaaacttaacgttcatg |
29 |
Q |
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| T |
35907177 |
ttctcaaccatgtaaacttaacgttcatg |
35907149 |
T |
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