View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_58 (Length: 247)
Name: NF11599_low_58
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6119631 - 6119872
Alignment:
| Q |
1 |
ctaacagcaagtttggtattttcctaactaatcatggttgaattagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacaccta |
100 |
Q |
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| T |
6119631 |
ctaacagcaagtttggtattttcctaactaatcatggttgaattagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacaccta |
6119730 |
T |
|
| Q |
101 |
gttcatc---aagtaacaaaaatccgtcaactttcgctccattagtcaaggcatctgcaatttgagactcagttggacaatgcatcactttaagccttcc |
197 |
Q |
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| T |
6119731 |
gttcatctctaagtaacaaaaatccgtcaactttcgctccattagtcaaggcatctgcaatttgagactcagttggacaatgcatcactttaagccttcc |
6119830 |
T |
|
| Q |
198 |
attgttcaccttctctcttaggaaataaaatattacccctatg |
240 |
Q |
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| T |
6119831 |
attgttcaccttctctcttaggaaataaaata-tacccctatg |
6119872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 6172813 - 6172659
Alignment:
| Q |
31 |
atcatggttgaattagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatc---aagtaacaaaaatccgtcaa |
127 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||| || |||| |
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| T |
6172813 |
atcatggttgaattactcacaccattctctcttaattcaaccttgtattcatcaaattgaatttctcctagttcatctctaagtaacaaaaacccatcaa |
6172714 |
T |
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| Q |
128 |
ctttcgctccattagtcaaggcatctgcaatttgagactcagttggacaatgcat |
182 |
Q |
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| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6172713 |
cattcactccattagtcaaggcatctgcaattggagactcagttggacaatgcat |
6172659 |
T |
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