View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_59 (Length: 241)
Name: NF11599_low_59
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26023368 - 26023598
Alignment:
| Q |
1 |
cctttgatcgttaataattgtgattgacttgacgacctgtaatcaaagtaggaatcaaatagtaaatgaaggaagtggaaaactttctttcnnnnnnn-- |
98 |
Q |
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| T |
26023368 |
cctttgatcattaataattgtgattgacttgacgacctgtaatcaaagtaggaatcaaacagtaaatgaaggaagtggaaaactttctttctttgttttt |
26023467 |
T |
|
| Q |
99 |
------cttctgaactccctcttttataaccctcatggaaagatgtataaacagttcaagatttaatagaaggttaaaaagcaaggtccaacacgtcata |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26023468 |
ttttttcttctgaactccctcttttataaccctcatggaaagatgtattaacagttcaagatttaatagaaggttaaaaagcaaggtccaacacgtaata |
26023567 |
T |
|
| Q |
193 |
tcacactttaaatatcaaaccgcactcaaga |
223 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26023568 |
tcacactttaaatatcaaaccgcactcaaga |
26023598 |
T |
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