View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_62 (Length: 240)
Name: NF11599_low_62
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24077601 - 24077824
Alignment:
| Q |
1 |
ccttcagaatagcgatttctgtatctctggccttaacctgaattcacatttaatatattattggcatgcaactatatgaatactaaaaatgtaatgagat |
100 |
Q |
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| T |
24077601 |
ccttcagactagcaatttctgtatctctggccttaacctgaattcacatttaatatattattggcatgcaactatatgaatactaaaaatgtaatgagat |
24077700 |
T |
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| Q |
101 |
agaattggaataggaaaaaagagaacctttggttcacggtgtttttctctgcgaacaacttcatacgaaatctcttttgctttctgcatctctagttgca |
200 |
Q |
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| T |
24077701 |
agaattggaataggaaaaaagagaacctttggttcacggtgtttttctctgcgaacaacttcatacgaaatctcttttgctttctgcatctctagttgca |
24077800 |
T |
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| Q |
201 |
gcatgacgatactaactagtctat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
24077801 |
gcatgacgatactaactagtctat |
24077824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 16439968 - 16439756
Alignment:
| Q |
4 |
tcagaatagcgatttctgtatctctggccttaacctgaattcacatttaatatattattggcatgcaactatatgaatactaaaaatgtaatgagataga |
103 |
Q |
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| T |
16439968 |
tcagactagcaatttctgtatctctggccttaacctgaattcacatttaatatattactga-atgcaactatatgaaaacaaaaaatgtaacgaggtaga |
16439870 |
T |
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| Q |
104 |
attggaataggaaaaaagagaacctttggttcacggtgtttttctctgcgaacaacttcatacgaaatctcttttgctttctgcatctctagttgcagca |
203 |
Q |
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| T |
16439869 |
ttttgaatagggaaataga--acctttggttcacggtgtttttctctgcaaacaacttcataggaaatctgttttgctttctccatctctatttgtagca |
16439772 |
T |
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| Q |
204 |
tgacgatactaactagtct |
222 |
Q |
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| T |
16439771 |
t---gatactaactagtct |
16439756 |
T |
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Back To:
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