View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_low_64 (Length: 239)

Name: NF11599_low_64
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_low_64
NF11599_low_64
[»] chr8 (2 HSPs)
chr8 (1-223)||(11485261-11485483)
chr8 (41-198)||(44957352-44957509)
[»] chr3 (29 HSPs)
chr3 (1-221)||(10500799-10501019)
chr3 (40-159)||(11781645-11781764)
chr3 (34-165)||(10433701-10433832)
chr3 (40-159)||(10517772-10517891)
chr3 (34-189)||(10032260-10032415)
chr3 (43-165)||(10077550-10077672)
chr3 (43-189)||(10663783-10663929)
chr3 (40-193)||(8861539-8861692)
chr3 (40-193)||(11130689-11130842)
chr3 (40-193)||(11159680-11159833)
chr3 (43-165)||(9850020-9850142)
chr3 (43-189)||(10089047-10089193)
chr3 (43-189)||(10195930-10196076)
chr3 (43-189)||(11769491-11769637)
chr3 (40-210)||(13161216-13161386)
chr3 (40-210)||(13289901-13290071)
chr3 (40-185)||(11148517-11148662)
chr3 (43-210)||(10127164-10127331)
chr3 (45-188)||(10363466-10363609)
chr3 (43-210)||(13171267-13171434)
chr3 (43-210)||(13344325-13344492)
chr3 (43-165)||(9839142-9839264)
chr3 (34-178)||(10260966-10261110)
chr3 (43-210)||(10184478-10184645)
chr3 (43-221)||(13333129-13333307)
chr3 (40-193)||(10889559-10889712)
chr3 (43-134)||(10527670-10527761)
chr3 (43-165)||(10375511-10375633)
chr3 (55-210)||(10580837-10580992)
[»] chr4 (1 HSPs)
chr4 (31-193)||(17852577-17852739)
[»] chr2 (1 HSPs)
chr2 (43-189)||(26907154-26907300)
[»] scaffold0002 (3 HSPs)
scaffold0002 (43-210)||(135554-135721)
scaffold0002 (43-210)||(145605-145772)
scaffold0002 (43-159)||(153910-154026)
[»] chr1 (1 HSPs)
chr1 (40-159)||(826198-826317)
[»] chr6 (1 HSPs)
chr6 (1-110)||(31679357-31679466)
[»] chr7 (1 HSPs)
chr7 (42-165)||(29836921-29837044)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11485483 - 11485261
Alignment:
Q  1 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11485483 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 11485384  T
Q  101 gaataggaaatgcgcatgcaacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11485383 gaataggaaatgcgcatgcgacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccg 11485284  T
Q  201 atcccaatcaagataattgtcgt 223  Q
    |||||||||||||||||||||||    
T  11485283 atcccaatcaagataattgtcgt 11485261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 44957352 - 44957509
Alignment:
Q  41 caaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttc 140  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||| || | |||    
T  44957352 caaatgcatgctttgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaatcggaaatgtgtgtgcaacctctgcaacgttttgttc 44957451  T
Q  141 gcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaac 198  Q
     |||||||||||||| ||||||||| ||||| |||  ||  ||||||| |||||||||    
T  44957452 acgtgttgttatgatgaccttgctttcagttcctcggttggtcaagggtgttattaac 44957509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10501019 - 10500799
Alignment:
Q  1 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 100  Q
    ||||| |||||||||||||| |||| | | |||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  10501019 tctagctttgggtatttaccacgaacatagtcttcatcaccaaatgcatgcttcgagagtaaagtccaacaatcatcatcagatagaggttctaatttat 10500920  T
Q  101 gaataggaaatgcgcatgcaacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccg 200  Q
    |||||||||||| |||||| |||||||||||||| | ||||||||||||||| ||||| |||| | | |||||||  ||| |||||||||||||||||      
T  10500919 gaataggaaatgtgcatgcgacctctgcaactttttgttcgcgtgttgttattatcactttgcctcctgtttctctgttagtcaagggagttattaactc 10500820  T
Q  201 atcccaatcaagataattgtc 221  Q
    |||||| |||| |||| ||||    
T  10500819 atcccagtcaacataactgtc 10500799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 11781645 - 11781764
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |  ||| |||||||||||||| | ||    
T  11781645 ccaaatgcatgtttcgagagtaaagaccaacaatcttcatgagatagaggttctaatgcatgaataggaaatgtgtgtgccacctctgcaactttttgtt 11781744  T
Q  140 cgcgtgttgttatgatcacc 159  Q
     ||| |||||||| ||||||    
T  11781745 ggcgagttgttataatcacc 11781764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 10433701 - 10433832
Alignment:
Q  34 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactt 133  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||| |  ||| ||||| |||||||    
T  10433701 tcactgcccaatgcatgcttcgagagtaaagaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactt 10433800  T
Q  134 tctcttcgcgtgttgttatgatcaccttgctt 165  Q
    | | || ||| |||||||| |||||| |||||    
T  10433801 tttgttggcgcgttgttataatcaccatgctt 10433832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 10517891 - 10517772
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| |  ||| |||||||||||||| | ||    
T  10517891 ccaaatgcatgttttgagagtaaagaccaacaatcttcatgagatagaggttctaattcctgaataggaaatgtgtgtgccacctctgcaactttttgtt 10517792  T
Q  140 cgcgtgttgttatgatcacc 159  Q
     ||| |||||||| ||||||    
T  10517791 ggcgcgttgttataatcacc 10517772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 10032415 - 10032260
Alignment:
Q  34 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactt 133  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||  |||||| ||| || || ||| |||||||||| |||||| ||||| |||||||    
T  10032415 tcactgcccaatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt 10032316  T
Q  134 tctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    |   || |||||||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10032315 ttcgttggcgtgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 10077672 - 10077550
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || |||||| |||||||||||||||  |||| |||||||||| |||| |||||||||| || ||| |||||||||||||| | || ||    
T  10077672 aatgcatgctttgaaagtaaataccaacaatcttcatttgataaaggttctaatatatgtataggaaatgtgcgtgccacctctgcaactttttgttggc 10077573  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    |||||||||| |||||| |||||    
T  10077572 gtgttgttataatcaccatgctt 10077550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 10663929 - 10663783
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| ||||||||||||||||  |||||| ||||||||||||| |||||||||| |  ||| ||||| |||||||| | |||||    
T  10663929 aatgcatgctttgaaagtaaggaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactttttgttcgc 10663830  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10663829 gcgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10663783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 8861692 - 8861539
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  8861692 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 8861593  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| | ||| ||| ||||| || | | |||||||||||| |||||||    
T  8861592 ggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggagtta 8861539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 11130689 - 11130842
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  11130689 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 11130788  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| | ||| ||| ||||| || | | |||||||||||| |||||||    
T  11130789 ggcgtgttgtgacgatgaccctgcttccattgtttccattaatcaaaggagtta 11130842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 11159680 - 11159833
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  11159680 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 11159779  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| | ||| ||| ||||| || | | |||||||||||| |||||||    
T  11159780 ggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaaaggagtta 11159833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 9850142 - 9850020
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| | ||||||||||| || ||||||| |  ||| ||||| |||||||| | || ||    
T  9850142 aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgccacctcagcaactttttgttggc 9850043  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    |||||||||| |||||| |||||    
T  9850042 gtgttgttataatcaccatgctt 9850020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 10089193 - 10089047
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||| ||||||||||||||  || ||| ||||||||||||| |||||||||| |  ||| ||||| || ||||| |||| ||    
T  10089193 aatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggc 10089094  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10089093 gcgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10089047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 10196076 - 10195930
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||| ||||||||||||||  || ||| ||||||||||||| |||||||||| |  ||| ||||| || ||||| |||| ||    
T  10196076 aatgcatgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggc 10195977  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  10195976 gcgttgttataatcaccatgcttccaggttttccatcaatgaaggga 10195930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 11769637 - 11769491
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| ||| ||||| ||| |||||||||| |  ||| ||||| ||||||||   || ||    
T  11769637 aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagttttaattcatgtataggaaatgtgtgtgccacctcagcaacttttcgttggc 11769538  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    |||||||||| |||||| ||||| ||| || ||||||| | ||||||    
T  11769537 gtgttgttataatcaccatgcttccaggttttccattactgaaggga 11769491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 13161386 - 13161216
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | ||    
T  13161386 ccaaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgtt 13161287  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
     ||||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13161286 ggcgtgttgtgatgatcaccctacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 13161216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 13290071 - 13289901
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | ||    
T  13290071 ccaaatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgtt 13289972  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
     ||||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13289971 ggcgtgttgtgatgatcaccctacttcctgttttgccgttaatcaatggagttactaactcatcccaatca 13289901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 11148517 - 11148662
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  |||||||||||||||||||||||    |||||||||||||||||| | ||    
T  11148517 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttatgaataggaaatgtatgtgcaacctctgcaactttttgtt 11148616  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaa 185  Q
     ||||||||| | ||| ||| ||||| || | | ||||||||||||    
T  11148617 ggcgtgttgtgacgatgaccctgcttccactgtttccattaatcaa 11148662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 10127331 - 10127164
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||||||||||||||||||||| |||||   || || || ||| |||||||||| || ||| ||||| |||||||| | || ||    
T  10127331 aatgcatgctttgatagtaaagaccaacaatcttcatctgatagtacttttagttcatgtataggaaatgtgcgtgccacctcagcaactttttgttggc 10127232  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    | |||||||| |||||| ||||| ||| || ||||||||| |||||| ||| || |  ||||||||||    
T  10127231 gcgttgttataatcaccatgcttccaggttttccattaatgaagggacttactagctcatcccaatca 10127164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 10363466 - 10363609
Alignment:
Q  45 tgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgcgt 144  Q
    ||||||||| |||||||||| ||||||||||||||  |||||| | ||||||||||| |||||||||| |  ||| ||||| || ||||| |||| |||     
T  10363466 tgcatgctttgagagtaaagtccaacaatcttcatttgatagaagatctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggcgc 10363565  T
Q  145 gttgttatgatcaccttgcttacagtttctccattaatcaaggg 188  Q
    |||||||| |||||| ||||| ||| || ||||| ||| |||||    
T  10363566 gttgttataatcaccatgcttccaggttttccatcaatgaaggg 10363609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 13171434 - 13171267
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  13171434 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 13171335  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13171334 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 13171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 13344492 - 13344325
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  13344492 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 13344393  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  13344392 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 13344325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 9839264 - 9839142
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| | ||||||||||| || ||||||| |  ||| ||||| |||||||| | || ||    
T  9839264 aatgcatgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgccacctcagcaactttttgttggc 9839165  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    | |||||||| |||||| |||||    
T  9839164 gcgttgttataatcaccatgctt 9839142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 10261110 - 10260966
Alignment:
Q  34 tcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactt 133  Q
    |||| ||| ||||||||||| ||||||||||||||||| |||||||  |||||| ||| || || ||| |||||||||| |||||| ||||| |||||||    
T  10261110 tcactgcccaatgcatgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactt 10261011  T
Q  134 tctcttcgcgtgttgttatgatcaccttgcttacagtttctccat 178  Q
    | | ||  || |||||||| |||||| ||||| ||| || |||||    
T  10261010 tttgttgccgcgttgttataatcaccatgcttccaggttttccat 10260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 10184645 - 10184478
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| |||||||| ||||||||||||||||  |||||| ||| || || ||| |||||||||| |  ||| ||||| || ||||| |||| ||    
T  10184645 aatgcatgctttgagagtaacgaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgtgtgccacctcagctactttttcttggc 10184546  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| |||||| ||| || |  ||||||||||    
T  10184545 gcgttgttataatcaccatgcttccaggttttccatcaatgaagggacttactagctcatcccaatca 10184478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 13333307 - 13333129
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  13333307 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 13333208  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatcaagataattgtc 221  Q
    ||||||| ||||||||| | ||| |  |||  || |||||||  ||||||| ||||  ||||||||||  |||||||||    
T  13333207 gtgttgtgatgatcaccctacttccttttttgccgttaatcagtggagttactaactcatcccaatcattataattgtc 13333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 10889712 - 10889559
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||||||| ||||||||||||||   |||||||| ||||| |  ||||||||| ||||||||| | | |  |||||||||||||||||| |  |    
T  10889712 ccaaatgcatgctttgagagtaaagaccatgtatcttcattagataaaacttctaatttgtgaataggatacgtgtgtgcaacctctgcaactttttgct 10889613  T
Q  140 cgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
     ||||||||| ||||  ||| ||||| || | | |||||||||||| |||||||    
T  10889612 ggcgtgttgtgatgacgaccctgcttccactgtttccattaatcaaaggagtta 10889559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 10527761 - 10527670
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaacttt 134  Q
    ||||||||||| |||||||||||||||||||||||||  |||| | ||| || |||||| |||||||||| || ||| ||||| ||||||||    
T  10527761 aatgcatgctttgagagtaaagaccaacaatcttcatttgataaaagttttagtttatgtataggaaatgtgcgtgccacctcagcaacttt 10527670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 10375511 - 10375633
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| ||||||||||||||||| |||||||  |||||| ||| || || ||| |||||||||| |||||| ||||  ||||||||   || ||    
T  10375511 aatgcatgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgctaccttagcaacttttcgttggc 10375610  T
Q  143 gtgttgttatgatcaccttgctt 165  Q
    | |||||||| |||||| |||||    
T  10375611 gcgttgttataatcaccatgctt 10375633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 10580992 - 10580837
Alignment:
Q  55 gagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgcgtgttgttatga 154  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||| | || |||   |  ||| | || || |||||| | || ||| |||||||| |    
T  10580992 gagagtaaagaccaacaatcttcatttgatagaggttctaaattatgtacagcaaacatgtgtgccatctttgtaactttttgttggcgcgttgttataa 10580893  T
Q  155 tcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||| ||||| ||| || ||||||||| |||||| ||| || |  ||||||||||    
T  10580892 tcaccatgcttccaggttttccattaatgaagggacttactagctcatcccaatca 10580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 17852577 - 17852739
Alignment:
Q  31 tcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaa 130  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||| || ||||||||| ||||    
T  17852577 tcttcacctccaaatgcatgctttgagagcaaagaccaacaatcttcatcggatataggttctaatttatgaattggaaatgtgcgtgcaacctccgcaa 17852676  T
Q  131 ctttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagggagtta 193  Q
    |||| | |  ||||||||||||||| ||||||||| ||| || ||| |||| |||||||||||    
T  17852677 ctttttttaggcgtgttgttatgatgaccttgcttccagcttttcccttaaacaagggagtta 17852739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 26907300 - 26907154
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||    ||| |||||||||||||| | || ||    
T  26907300 aatgcatgctttgagagtaaagaccaacaatcttcagttgatagaggttctaatttatgtataggaaatgtatgtgccacctctgcaactttttgttggc 26907201  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaaggga 189  Q
    | |||||||| |||||| ||||| ||| || ||||| ||| ||||||    
T  26907200 gcgttgttataatcaccatgcttccaggttttccatgaatgaaggga 26907154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 135554 - 135721
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  135554 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 135653  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  135654 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 135721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 145605 - 145772
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  145605 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 145704  T
Q  143 gtgttgttatgatcaccttgcttacagtttctccattaatcaagggagttattaaccgatcccaatca 210  Q
    ||||||| ||||||||| | ||| | ||||  || |||||||| ||||||| ||||  ||||||||||    
T  145705 gtgttgtgatgatcaccatacttcccgttttgccgttaatcaatggagttactaactcatcccaatca 145772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 153910 - 154026
Alignment:
Q  43 aatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcgc 142  Q
    ||||||||||| || ||||| |||||||| || ||||| |||||||| |||| ||| ||||||||||| | |  ||||||||| |||||||| | || ||    
T  153910 aatgcatgctttgaaagtaacgaccaacagtcatcatctgatagaggatctactttgtgaataggaaacgtgtgtgcaacctccgcaactttttgttggc 154009  T
Q  143 gtgttgttatgatcacc 159  Q
    ||||||| |||||||||    
T  154010 gtgttgtgatgatcacc 154026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 826317 - 826198
Alignment:
Q  40 ccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctctt 139  Q
    |||||||||| ||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||||||| | |    |||||||||||||||| | || |    
T  826317 ccaaatgcatacttggagagtaaagaccaacaatgttcgtccgatagaggttccaatttatgaataggatacgtatgtgcaacctctgcaactctttcgt 826218  T
Q  140 cgcgtgttgttatgatcacc 159  Q
     ||||||||| |||||||||    
T  826217 agcgtgttgtgatgatcacc 826198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31679357 - 31679466
Alignment:
Q  1 tctaggtttgggtatttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttat 100  Q
    |||||| ||||||||||||  | |  || ||||||||  |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  31679357 tctaggcttgggtatttacggccacaaagttcttcacttccaaatgcatgctttgagagtaaagaccagcaatcatcatctgatagaggttctaatttat 31679456  T
Q  101 gaataggaaa 110  Q
      ||||||||    
T  31679457 agataggaaa 31679466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 29837044 - 29836921
Alignment:
Q  42 aaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcgcatgcaacctctgcaactttctcttcg 141  Q
    |||||||  ||| |||||||||  |||| | ||||| || |||||| || |||||||||||||  ||||||| | | || ||||||||||| ||| |||     
T  29837044 aaatgcacactttgagagtaaatgccaagagtcttcgtccgatagatgtgctaatttatgaatgtgaaatgcacgtacagcctctgcaactctctgttca 29836945  T
Q  142 cgtgttgttatgatcaccttgctt 165  Q
    |||||||| ||||| |||||||||    
T  29836944 cgtgttgtaatgattaccttgctt 29836921  T

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