View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_65 (Length: 239)
Name: NF11599_low_65
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_65 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 20133678 - 20133455
Alignment:
| Q |
1 |
gcttatcgtttatcaattacaattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatctagctgcacgcattcaataggca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20133678 |
gcttatcatttatcaattacaattcaagatcgaattttattggagttatattatatatgttggtcaggctatatatctagctgcacgcattcgataggca |
20133579 |
T |
|
| Q |
101 |
gtttaattgtgctttctttgtggatagttcagccacttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccattat |
200 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20133578 |
gtttaattgtgcttgctttgtggatagttctgccacttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccataat |
20133479 |
T |
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| Q |
201 |
attattatttaaaaccttataattg |
225 |
Q |
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|||||||||| |||||||||||||| |
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| T |
20133478 |
attattattt-aaaccttataattg |
20133455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1688 - 1471
Alignment:
| Q |
1 |
gcttatcgtttatcaattacaattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatctagctgcacgcattcaataggca |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
1688 |
gcttaacgtttatcaattacaattcaagatcgaattttatt------atactatatatgttggtcaggctatatatctagctgcacacattcaatagaca |
1595 |
T |
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| Q |
101 |
gtttaattgtgctttctttgtggatagttcagccacttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccattat |
200 |
Q |
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| T |
1594 |
gtttaattgtgcttgctttgtggatagttcagccacttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccattat |
1495 |
T |
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| Q |
201 |
attattatttaaaaccttataattg |
225 |
Q |
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|||||||||| |||||||||||||| |
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| T |
1494 |
attattattt-aaaccttataattg |
1471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44358393 - 44358616
Alignment:
| Q |
1 |
gcttatcgtttatcaattacaattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatctagctgcacgcattcaataggca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44358393 |
gcttatcatttatcaattacaattcaagatcgaattttattggagttatattatatatgttggtcaggctatatatctagctgcacgcattcgataggca |
44358492 |
T |
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| Q |
101 |
gtttaattgtgctttctttgtggatagttcagccacttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccattat |
200 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44358493 |
gtttaattgtgcttgctttgtggatagttctgccacttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccataat |
44358592 |
T |
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| Q |
201 |
attattatttaaaaccttataattg |
225 |
Q |
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|||||||||| |||||||||||||| |
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| T |
44358593 |
attattattt-aaaccttataattg |
44358616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 135140 - 134984
Alignment:
| Q |
1 |
gcttatcgtttatcaattacaattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatctagctgcacgcattcaataggca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| || |
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| T |
135140 |
gcttatcgtttatcaattacaattcaagatcgaattttatt------atactatatatgttggtcaagctatatatctagctgcacgcattcgatagaca |
135047 |
T |
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| Q |
101 |
gtttaattgtgctttctttgtggatagttcagccacttcaaccaagctttgatttctatttgt |
163 |
Q |
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| T |
135046 |
gtttaattgtgcttgctttgtggatagttcagccacttcaaccaagctttgatttctatttgt |
134984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 33483531 - 33483442
Alignment:
| Q |
135 |
acttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatccattatattattatttaaaaccttataattg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
33483531 |
acttcaaccaagctttgatttctatttgtgacggcatcaggatttgattaatttagaatcaattatattattattt-aaaccttataattg |
33483442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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