View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_69 (Length: 238)
Name: NF11599_low_69
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2035769 - 2035991
Alignment:
| Q |
1 |
atctgagctaacaagacaatagcttgatccttatacattgcttttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccag |
100 |
Q |
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| T |
2035769 |
atctgagctaacaagacaatagcttcatccttatacattgcttttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccag |
2035868 |
T |
|
| Q |
101 |
ttataatccatttcaaaccacctttaccactaatcttaataattgctgttaagagaacaaatgcaagaattttctgaatgaaatcagaaaacattagttt |
200 |
Q |
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| T |
2035869 |
ttataatccatttcaaaccacctttaccactaatcttaataattgctgttaagagaacaaatgcaagaagtttctgaatgaaatcagaaaacattagttt |
2035968 |
T |
|
| Q |
201 |
taggctcattttgtagatattgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2035969 |
taggctcattttgtagatattgt |
2035991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 3217556 - 3217651
Alignment:
| Q |
51 |
tggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacct---ttaccactaatcttaataat |
143 |
Q |
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| T |
3217556 |
tggaattccaaggatcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataat |
3217651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 10838825 - 10838876
Alignment:
| Q |
44 |
ttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaa |
95 |
Q |
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| T |
10838825 |
ttaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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