View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_low_7 (Length: 626)
Name: NF11599_low_7
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_7 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 31561083 - 31561687
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31561083 |
aaaaaatagctgtgcgtcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
31561182 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31561183 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtgattatcaaaatttg |
31561282 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31561283 |
gcagatgagatactgaattatgctaaaggtctaccgctagcaattacagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcat |
31561382 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
|| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||| |
|
|
| T |
31561383 |
tgtccagattgagagaaagtccagataataatgtcatggatgtgctgcagataagttttgatggtctaaatcttacggaaaaagaaatgtttcttcatat |
31561482 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaa |
500 |
Q |
| |
|
||||||||||||||||| | || |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
31561483 |
tgcttgttttttcaactttctgcacgagaaaagagttaaaaacattctaaatagttgtggatttcatgctgatattggattaagagttctccttgataaa |
31561582 |
T |
|
| Q |
501 |
tcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaa |
600 |
Q |
| |
|
|||||||||||||||||| ||||| | |||| ||||||||| ||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
31561583 |
tcacttataagcattgataattca---ataattaaaatgcattatttgttggaagaactaggcagaaaaattgtgcaagaaagttcaagcaaagagcaaa |
31561679 |
T |
|
| Q |
601 |
gaaagtgg |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
31561680 |
gaaagtgg |
31561687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 33411759 - 33411154
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33411759 |
aaaaaatagctgtgcatcgtgaatggttaggtgcgggtagtagaatcgttatcatttctagagatgagcatatattgaaagagtacggagtggatgtagt |
33411660 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
|||||||||||||||| ||||| | || ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33411659 |
ttacaaagttccacttatgaatagtacagattcttacgagttattttgtcgaaaagctttcaaagttgagaaaattattatgagtgattatcaaaatttg |
33411560 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | || |||||||||||||||||| |
|
|
| T |
33411559 |
gcaaatgagatactagattatgctaaaggtctaccactagcaattaaagtattgggctcatttttgtttggtcatagtgtggctgaatggaagagtgcat |
33411460 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || || | | ||||||||||||||||||||||| |
|
|
| T |
33411459 |
tggctagattgagagaaagtccgcataatgatgtcatggatgtgctgcacttaagttttgatgggttagatgaaaaggaaaaagaaatatttcttgatat |
33411360 |
T |
|
| Q |
401 |
tgcttgttttttcaactct-tggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataa |
499 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
33411359 |
tgcttgttttttcaactctcagccccgagaaatatgttaaaaacgttctaaattgttgtggatttcatgctgatattggattaggagttctcattgataa |
33411260 |
T |
|
| Q |
500 |
atcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaa |
599 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33411259 |
atcacttataagcattgaggatgcaaa---tattaaaatgcattctttgttggaagagctaggcagaaaaattgtgcaagaaaattcaagcaaagagcaa |
33411163 |
T |
|
| Q |
600 |
agaaagtgg |
608 |
Q |
| |
|
||||||||| |
|
|
| T |
33411162 |
agaaagtgg |
33411154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 608
Target Start/End: Complemental strand, 33306281 - 33305688
Alignment:
| Q |
12 |
gtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttc |
111 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
33306281 |
gtgcatcgcgaatggttaggtgcaggtagtagaatcgttgtcatttctagagatgagcatatattgaaggagtatggagtggatgtattttacaaagttc |
33306182 |
T |
|
| Q |
112 |
cacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgagat |
211 |
Q |
| |
|
|||| |||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
33306181 |
cactcttgaatatggccgaatctcacaagttattttgtcgaaaagctttcaaacttgagaacattatattgggtaattatcaaaatttggcagatgagat |
33306082 |
T |
|
| Q |
212 |
actgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattg |
311 |
Q |
| |
|
| ||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33306081 |
attgagttatgctaatggtctacccctagcaattacaatattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcattggctagattg |
33305982 |
T |
|
| Q |
312 |
agagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgttttt |
411 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||| |||||||||||||| ||| | | || ||| |||||||||||||||||||||||||||| | |
|
|
| T |
33305981 |
agagaaagtccaaataaagatgtcatgaatgtgctgcatttaagttttgatgggctagaggagacggaacaagaaatatttcttgatattgcttgtttct |
33305882 |
T |
|
| Q |
412 |
tcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataag |
511 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33305881 |
tcaactcttggcccatggaagaggttaaaaacattctaaattgttgtggattccatgctgatattggattaagagttctcaatgataaatcacttataaa |
33305782 |
T |
|
| Q |
512 |
cattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaagtgg |
608 |
Q |
| |
|
|| | || ||||| | |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33305781 |
cactaattattcaca---tattgaaatacattctttgttggaagagctaggcagaaaaattgtgcaagaaaattcaagcaaagagcaaagaaagtgg |
33305688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 33389878 - 33389271
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33389878 |
aaaaaatagctgtgcatcgtgagtggttaggtgcaggtagtagaataattatcatttctagagatgagcatatattgaaagagtatggagtggacgtagt |
33389779 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
33389778 |
ttacaaagttccacttttgaatcggaccgattctcacaagttattttgtcaaaaagctttcaaacatgagaaaattattatgagtagttaccaaaatttg |
33389679 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
| ||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33389678 |
gattttgagatactgagttatgctaatggtcttccactagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgcat |
33389579 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33389578 |
tggctagattgagagaaaggccagataacgatgtcatggatgtgctacagttaagttttgatggtctaaatcatatggaaaaagaaatatttcttgatat |
33389479 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaa |
500 |
Q |
| |
|
|||||||||||||||| | |||||| || |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33389478 |
tgcttgttttttcaaccgcgaatcagagaaatatgtaaaaaacgttctaaatcattgtggatttcatgctgatattggattaagagttctcattgataaa |
33389379 |
T |
|
| Q |
501 |
tcacttataagcattga---tcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagc |
597 |
Q |
| |
|
||||||||||||||| | | ||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33389378 |
tcacttataagcattaatagtgattcagtg---attgaaatgcattctttattggttgagctaggcagaaaaattgtgcgagaaaattcaagcaaagagc |
33389282 |
T |
|
| Q |
598 |
aaagaaagtgg |
608 |
Q |
| |
|
||||||||||| |
|
|
| T |
33389281 |
aaagaaagtgg |
33389271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 9168580 - 9167977
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagt---ggatgt |
97 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9168580 |
aaaaaatagatgtgcatcgtgaatggttaggtgtgggtagtagaattattatcgtatcttgagatgagcatatattgaaagagtatggagtactggatgt |
9168481 |
T |
|
| Q |
98 |
agtttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaat |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||| | || |||||| |||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
9168480 |
agtttacaaagttccactcttgaatcagactgaatctcactagttattttatcgaaaagctttcaaacttgagaaaactattagcagtaattatcaaaat |
9168381 |
T |
|
| Q |
198 |
ttggcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtg |
297 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
9168380 |
ttggcatatgagatacttaattatgcgaaaggtctaccattagcaattaaagtattgggctcatttttgtttggtcgtaatgtgactgaatgcaagagtg |
9168281 |
T |
|
| Q |
298 |
cattggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttga |
397 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||||||||| ||||| ||||||||||||| ||| | | || ||||| |||||||||||| | |
|
|
| T |
9168280 |
cattggctagattgagacaaatcccagataaagatgtcatggatgtgttgcaactaagttttgatgggctagaggaaacggaaaaggaaatatttcttca |
9168181 |
T |
|
| Q |
398 |
tattgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgat |
497 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
9168180 |
tattgcttgttttttcaactcttggtccgagaactatgttaacaacattctaaattgttgtggattttatgttgatattggattaagagttctcattgat |
9168081 |
T |
|
| Q |
498 |
aaatcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagc |
597 |
Q |
| |
|
|||||||||||||||||| || ||||| || ||| ||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9168080 |
aaatcacttataagcattaattattcagag---attaaaatgcattatttgttagaagagctgggcagaaaaattgtgcaagaaaattcaagcaaagagc |
9167984 |
T |
|
| Q |
598 |
aaagaaa |
604 |
Q |
| |
|
||||||| |
|
|
| T |
9167983 |
aaagaaa |
9167977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 33402420 - 33401820
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
33402420 |
aaaaaataggtgtgcatcgtgaatgtttaggtgcgggtagtagaattattatcatttctagagatgaacatatattgaaagagtatgaagtggacgtagt |
33402321 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
||||||||||| |||||||||| | |||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33402320 |
ttacaaagttcaacttttgaattggaccgaatctcataagttattttgtcgaaaagctttcaaagctgagaaaattattatgagtaattatcaaaatttg |
33402221 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
||| || ||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
33402220 |
gcaaataagatattgaattatgctagtggtctaccacttgcaattaaagtattgggctcatttttgttcggtcgtaatgtgactgaatggaagagtgcat |
33402121 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || | | || |||||| |||||||||||||||| |
|
|
| T |
33402120 |
tggctaaattgagagaaagtccaaataaagatgtcatggatgtgctgcaattaagttttgatgggttagagaagacggaaaaacaaatatttcttgatat |
33402021 |
T |
|
| Q |
401 |
tgcttgttttttcaactct-tggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataa |
499 |
Q |
| |
|
||||||| ||||||| | | ||| | ||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
33402020 |
tgcttgtcttttcaattgtctggacatggaatat-gttaaaaacattctaaattgttgtggatttaatgctgatattggaataagagttctcattgataa |
33401922 |
T |
|
| Q |
500 |
atcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaa |
599 |
Q |
| |
|
|||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| | |
|
|
| T |
33401921 |
atcacttataagcattaatggtcaaaa---tattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcaaaaaacttcaagcaaagagcca |
33401825 |
T |
|
| Q |
600 |
agaaa |
604 |
Q |
| |
|
||||| |
|
|
| T |
33401824 |
agaaa |
33401820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 33642876 - 33643483
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33642876 |
aaaaaataggtgtgcgtcgtgaatggttaggtgcaggtagtatagttattatcatttctagagatgagcatatattgaaagtgtatggagtggatgtagt |
33642975 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||| | || ||| || ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
33642976 |
ttacaaagttccacttttgaatcagacagaatcttgcaagttgttttgtcgaaaagctttcaaacttgagaaaactattatgagtaattatcgaaagttg |
33643075 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
||| ||| |||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
33643076 |
gcatctgatgtactacgttatgctaatggtctaccactagcaattacaatattgagctcatttttgtttggtcgtaatgtaactgaatggaatggtgcat |
33643175 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| ||||| | | ||||||||||||||||||||||| |
|
|
| T |
33643176 |
tggctagattgagagaaggtccagataatgatgttatggatgtgctgagtttaagctttgatgtgctaaaggagagtgaaaaagaaatatttcttgatat |
33643275 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaa |
500 |
Q |
| |
|
|||||||||||||||| || | ||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
33643276 |
tgcttgttttttcaacggttatcacgagaaatatgctaaaaacattttaaattgttgtggatttcatgctgatattgggttaagagttctcattgataaa |
33643375 |
T |
|
| Q |
501 |
tcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaa |
600 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33643376 |
tcacttataagcattgattattcaatgaggattgaaatgcattctctgttagaagagctaggaaaaaaaattgtgcaagaaaattcaagcaaagagcaaa |
33643475 |
T |
|
| Q |
601 |
gaaagtgg |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
33643476 |
gaaagtgg |
33643483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 33273598 - 33272994
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
33273598 |
aaaaaataggtgtgcatcgtgaatggttaggtgcaggtagtagaattataatcatttctagagatgagcatatattgaaatactatggagtggatgcagt |
33273499 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
|||||||||||||||||||||| | | || ||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||| || |
|
|
| T |
33273498 |
ttacaaagttccacttttgaattggacagattctcacaagttattttgtcaaaaagctttcaaatttgagaaagttattatgagtaattatgaaaactta |
33273399 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
|| ||||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33273398 |
gcgtatgagattctagattatgctaatggtctaccactagcaattatagtattgggctcatttttgtttggtcgtaatgtgactgaatggaagagtgccc |
33273299 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||| |||| |
|
|
| T |
33273298 |
tggctagattgagagaaagtccaaataatgatatcatggatgtgctgcaattaagttttgatgggctagagcatactgaaaaagaaatatttcttcatat |
33273199 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaa |
500 |
Q |
| |
|
|||||||||||||| || | | || || |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
33273198 |
tgcttgttttttcagctacagttcgaaggaatatgttaaaaacattctaaattgttgtggttttcatgctgacattggattaagtgttctcaatgataaa |
33273099 |
T |
|
| Q |
501 |
tcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaa |
600 |
Q |
| |
|
|||||||||||| ||| | | ||| | |||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
33273098 |
tcacttataagccttggtgagtca---acaattataatgcattctttgttggaagagctgggcagaaaaattgtgcaagaaaattcaagcaaagagcgaa |
33273002 |
T |
|
| Q |
601 |
gaaagtgg |
608 |
Q |
| |
|
|||||||| |
|
|
| T |
33273001 |
gaaagtgg |
33272994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 604
Target Start/End: Complemental strand, 33059367 - 33058769
Alignment:
| Q |
3 |
aaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagttt |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
33059367 |
aaaatagcggtgcatcgtgaatggttaggtccaggtagtagaattattatcatttctagagatgagcatgtattgaaagcgtatggagtggatgtagttt |
33059268 |
T |
|
| Q |
103 |
acaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggc |
202 |
Q |
| |
|
|||||||| |||| ||| || | || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059267 |
acaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagaaaattattatgagtaattatcaaaatttggt |
33059168 |
T |
|
| Q |
203 |
agatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattg |
302 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33059167 |
agatcagatactacattatgctaaaggtctaccactagcaattaaagtattgggctcgtttttgtttggtcgtaatgtgactgaatggaagagtgcattg |
33059068 |
T |
|
| Q |
303 |
gctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattg |
402 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| | || |||||||| ||||||||| |||||| |
|
|
| T |
33059067 |
actagattgagacaaagtccagttaaagatgtcatggatgtgctgcaattaagttttgatgggctcaatgaaacggaaaaagacatatttcttcatattg |
33058968 |
T |
|
| Q |
403 |
cttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatc |
502 |
Q |
| |
|
|||||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33058967 |
cttgttttttcaacaacgattcggaggaagatgttaaaaacattctaaactgttgtggatttcatgctgatattggattaagagttctcattgataaatc |
33058868 |
T |
|
| Q |
503 |
acttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaaga |
602 |
Q |
| |
|
|||| |||||||| | ||||| | ||| | ||||||||||||||| |||||||||||||||||||||||| | | | |||||||||||| | |||| |
|
|
| T |
33058867 |
acttgtaagcattagttattca---attattaacatgcattctttgttggaagagctaggcagaaaaattgtgcaaaatagttcaagcaaagaaccaaga |
33058771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 5 - 604
Target Start/End: Complemental strand, 33264451 - 33263855
Alignment:
| Q |
5 |
aatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttac |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
33264451 |
aataggtgtgcatcgtgaatggttaggtgcaggtagtagaatcgttatcatttcaagagatgaacatatattgaaagaatataaagtggatgtagtttac |
33264352 |
T |
|
| Q |
105 |
aaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcag |
204 |
Q |
| |
|
||||| |||||| ||||| |||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33264351 |
aaagtcccacttctgaattgggccgaagctcacaagttattttgtagaaaagctttcaaagctgagaaaattattatgagtaattataaaaatttggcaa |
33264252 |
T |
|
| Q |
205 |
atgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggc |
304 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
33264251 |
atgagatattgagatatgctaatggtctaccactagcaattaaagtattgggttcatatttgtttggtcgtaatgtgactgaatggaagagtacattggc |
33264152 |
T |
|
| Q |
305 |
tagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgct |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||| ||||||||| |
|
|
| T |
33264151 |
tagtttgagagaaagtccagataatgatgtcatggatgtgttgcaattaagttttgatgggctaaaggaaatggaaaaagaaatatttctcgatattgct |
33264052 |
T |
|
| Q |
405 |
tgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcac |
504 |
Q |
| |
|
||||||| | || | || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
33264051 |
tgtttttcaacctttcggaatgagaaatatgttaaaaacattttaaattgttgtggatttcatgctgatattggattaagtgttctcattgctaaatcac |
33263952 |
T |
|
| Q |
505 |
ttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaa |
604 |
Q |
| |
|
||||||||||| | ||||| |||||| |||||||||||||||| ||||||||||| |||||||||||| | | | |||| ||||||||| |||||| |
|
|
| T |
33263951 |
ttataagcattagtaattca---agaattataatgcattctttgttgcaagagctaggccgaaaaattgtgcaaaatagttcatgcaaagagccaagaaa |
33263855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 33287348 - 33286748
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33287348 |
aaaaaataggtgtgcatcgtgaatgtttaggcgtaggtagtagaattattatcatttctagagatgagcatatattggaagagtatggagtggatgtagt |
33287249 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
|||||||||||||| ||| || | || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||| |
|
|
| T |
33287248 |
ctacaaagttccactcttggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagaagagaaaattattatgagaaattatgaaagtttg |
33287149 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
| | ||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
33287148 |
gtatatgagatactggattatgctaatggtctaccgttagcaattaaagtattgggctcatttttgtttggtcgtaatgtgacggaatggaagagtgcat |
33287049 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
33287048 |
tgactagattaagagaaagtccagataatgatgtcatggatgtgctgcagttaagttttgatggtctaaaggagactgaaaaagaaatatttcttgatat |
33286949 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccgagaaaata-gttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataa |
499 |
Q |
| |
|
|||||||||||||||| | || |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
33286948 |
tgcttgttttttcaac-cgcaaatcggaaaaatatgctaaaaacattctaaattgttgtagatttcatgctgatattggattaagagttcttattgataa |
33286850 |
T |
|
| Q |
500 |
atcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaa |
599 |
Q |
| |
|
||||||||| | |||| || | ||| |||||||||||||||||||| |||||||||||||||||||||||| | | | |||||||||||||| | |
|
|
| T |
33286849 |
atcacttatgaacattaatggtcaaaa---tcttgaaatgcattctttgttggaagagctaggcagaaaaattgtgcaaaatagttcaagcaaagagcca |
33286753 |
T |
|
| Q |
600 |
agaaa |
604 |
Q |
| |
|
||||| |
|
|
| T |
33286752 |
agaaa |
33286748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 166 - 565
Target Start/End: Original strand, 28869210 - 28869609
Alignment:
| Q |
166 |
ttgagaaaattattatgagtaattatcaaaatttggcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcattttt |
265 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||| ||||| ||||| ||| |
|
|
| T |
28869210 |
ttgaaaaagttatcatgagtaattatcaaaatttggcaaatgtgatactggattatgctaaaggtctaccgctagcaattacaatattgtactcatattt |
28869309 |
T |
|
| Q |
266 |
gtttggtcgtaatttgactgaatggaagagtgcattggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggt |
365 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28869310 |
gtttggtcgtaatgtgactgaatggaagagtgcattggctagattgagagaaagtccagataatgatgtcatggatgtgctgcagttaagttttgatggt |
28869409 |
T |
|
| Q |
366 |
ctaaatcatacagaaaaagaaatatttcttgatattgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttc |
465 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
28869410 |
ctaaatcatactgaaaaagaattatttcttgatattgtttgctttttcaactcttggaccgagaaaagagttaaaaacattctaaattgttgtgggtttc |
28869509 |
T |
|
| Q |
466 |
atgctgatattggattaagaattctcattgataaatcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcag |
565 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28869510 |
atgctgatattggattaaaagttctcattgataaatcccttataagcattgatcattcaacgaggattgaaatgcattctttgttgaaagagctaggcag |
28869609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 13609637 - 13609719
Alignment:
| Q |
234 |
ccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagaga |
316 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |||||| || | ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
13609637 |
ccactagcaattgaagtgttgggctcatttttgtatggtcgagatgtctctgaatggagaagtgcattggccagattaagaga |
13609719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 13609434 - 13609502
Alignment:
| Q |
28 |
taggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatg |
96 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||| ||||| |||| |||| ||||||| |||| |
|
|
| T |
13609434 |
taggttcagggagtagaattatcgtaatttctagagatggccatatcttgagagagcatggagtagatg |
13609502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 17439102 - 17439674
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17439102 |
aaaaaatagatgtgcatcttgaatggttaggtgcaggtagtagaatcattatcatttctagagatgagcatatattgaaaaagtatggagtggatgtagt |
17439201 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
|||||||||||||||||||||| | || ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17439202 |
ttacaaagttccacttttgaattggagagattcttacaagttattttgtcgaaaagctttcaaagttgagaacattattatgagtaattatcaaaatttg |
17439301 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
||| |||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
17439302 |
gcaaatgagatactgagatatgctaatggtctaccactagcaattaaagtaatgggctcatttttgtttggttgtaatgtgactgaatggaagagtgcat |
17439401 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
17439402 |
tggctagattgagagagagtccagataaagatgtcatagacgtgctgcaattaagttttgatgggctaaagcatactgaaaaggaaatatttcttgatat |
17439501 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaa |
500 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
17439502 |
tgcttgttttttcaactctgaatgtgagaaatatgttaaaaacattcttaattgttgtggatttcatgctgatattggattaagagttctcattaataaa |
17439601 |
T |
|
| Q |
501 |
tcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgc |
576 |
Q |
| |
|
||||||||||||||| || | ||| ||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
17439602 |
tcacttataagcattaatggtcaaaa---cattgaaatgcattctttgttggaagagctgggcagaaaaattgtgc |
17439674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 5 - 608
Target Start/End: Complemental strand, 8562 - 7962
Alignment:
| Q |
5 |
aatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttac |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
8562 |
aataggtgtgcatcgtgaatggttaggtgcaggtagtagaatcgttatcatttcaagagatgaacatatattgaaagaatataaagtggatgtagtttac |
8463 |
T |
|
| Q |
105 |
aaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcag |
204 |
Q |
| |
|
||||||||||| ||| || | |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8462 |
aaagttccactgttggattggaccgagtctcacaagttattttgtcaaaaagctttcaaacttgagaaaattatcatgaaaaattatcaaaatttggcat |
8363 |
T |
|
| Q |
205 |
atgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggc |
304 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8362 |
atgagatactgaattacgctaatggtctaccactagcaattacagtattgggctcatttttgtctggtcgtaatgtgactgaatggaagagtgcattggc |
8263 |
T |
|
| Q |
305 |
tagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgct |
404 |
Q |
| |
|
|||| ||||| |||||||| |||| ||||||||||||||||| |||||||||| |||||| ||| | | || ||||||||||||||||||||||||||| |
|
|
| T |
8262 |
tagactgagacaaagtccaaataaagatgtcatggatgtgcttcaattaagttatgatgggctagaggaaacggaaaaagaaatatttcttgatattgct |
8163 |
T |
|
| Q |
405 |
tgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcac |
504 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||| |
|
|
| T |
8162 |
tgttttttcaactctcggaatgagaaaattattaaaaacattctaaattgttgtggatttcacgctgatattggatttatagttctcattgataaatcac |
8063 |
T |
|
| Q |
505 |
ttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaa |
604 |
Q |
| |
|
| |||| |||| || |||| | |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8062 |
taataaccattcatggttca---attgttgaaatgcattctttgttggaagagttaggcagaaaaattgtgcaagaaaattcaagcaaagagcaaagaaa |
7966 |
T |
|
| Q |
605 |
gtgg |
608 |
Q |
| |
|
|||| |
|
|
| T |
7965 |
gtgg |
7962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 16 - 608
Target Start/End: Complemental strand, 31150130 - 31149541
Alignment:
| Q |
16 |
atcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccact |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31150130 |
atcgtgaatggttaggtgcggggagtagaatcattataatttctagagacgagcatatcttgaaagagtatggagtggatgttgtttacaaagttccact |
31150031 |
T |
|
| Q |
116 |
tttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgagatactg |
215 |
Q |
| |
|
|||||| | | || |||| |||||| ||||||||||||||||| |||| | ||||||||||| |||| | || |||||| ||||||||| |
|
|
| T |
31150030 |
cctgaatcggactgactctcttcaattatttagtcgaaaagctttcaaacttgatca---tattatgagtagttatgataagttggcatctgagatacta |
31149934 |
T |
|
| Q |
216 |
aattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagag |
315 |
Q |
| |
|
| |||||||| || ||||| |||||||||| |||||| ||||| ||||||| || ||| ||| | ||||||||| ||||||||||| |||||||||| |
|
|
| T |
31149933 |
aggtatgctaatggcctacctctagcaattaaagtattaggctcgtttttgtatgatcgaaatatttttgaatggaaaagtgcattggcaagattgagag |
31149834 |
T |
|
| Q |
316 |
aaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgttttttcaa |
415 |
Q |
| |
|
|||||||| | || ||| ||||||||||| ||| ||||||||||||||| | | | | ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
31149833 |
aaagtccaaacaaagatatcatggatgtgttgcgattaagttttgatgggttggaggaaatggaaaaggaaatatttctccatattgcttgttttttcaa |
31149734 |
T |
|
| Q |
416 |
ctcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataagca-t |
514 |
Q |
| |
|
| |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| | |
|
|
| T |
31149733 |
agggggtgaggagaaatatgttaaaaatgttctaaactgttgtggatttcatgctgatattggattaagggttctaattgataaatccgttataagcatt |
31149634 |
T |
|
| Q |
515 |
tgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaagtgg |
608 |
Q |
| |
|
| | || ||| | |||||||| || ||||||| ||||||| |||||||||||||| | |||||| |||| ||||||| |||||||||| |
|
|
| T |
31149633 |
tcaaca-gaaaataatattgaaatacaccgtttgttgcaagagcttggcagaaaaattgttcaagaaaaatcaatcaaagagtcaagaaagtgg |
31149541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 31029463 - 31028967
Alignment:
| Q |
16 |
atcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccact |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
31029463 |
atcgtgaatatttaggtgcagggagtagaatcattataatttctagagatgagcatatcttgaatgagtatggagttgatgaagtttacaaagttccact |
31029364 |
T |
|
| Q |
116 |
tttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgagatactg |
215 |
Q |
| |
|
|||||| || || | |||| |||||||||| ||||||||||||| ||||| | | |||||||| |||| | || ||||| ||| | ||| |
|
|
| T |
31029363 |
cttgaatgagaccaactctcttcaattattttgtcaaaaagctttcaaacttgagca---tgttatgagtggttatgataaaatggcacttgacacacta |
31029267 |
T |
|
| Q |
216 |
aattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagag |
315 |
Q |
| |
|
|||||| || || ||||||||||| |||| ||||||||||||||||||||||||||| || | ||||||||| ||| ||||||||||||||||| |
|
|
| T |
31029266 |
tcttatgccaatggcctaccactagctattaaagtattgggctcatttttgtttggtcgagatatctctgaatggagaagtaaattggctagattgagag |
31029167 |
T |
|
| Q |
316 |
aaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgttttttcaa |
415 |
Q |
| |
|
|| ||||| || ||| | ||||||||| ||| |||||||||||| || ||| | ||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31029166 |
aatgtccaatcaaagatattatggatgtgttgcgattaagttttgaagggctagagaatatggaaaaagatatatttcttgatattgcttgttttttcaa |
31029067 |
T |
|
| Q |
416 |
ctcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataagcatt |
515 |
Q |
| |
|
| | || || |||| ||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31029066 |
agggtacaacaaggaatgtgttacaaatattctaaattgtcgtgggtttcatgctgatatcggattaagaattctcattgataaatcccttataagcatt |
31028967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 604
Target Start/End: Original strand, 31477264 - 31477848
Alignment:
| Q |
17 |
tcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccactt |
116 |
Q |
| |
|
|||||||||| |||||| || |||| ||| ||||| |||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||| || |
|
|
| T |
31477264 |
tcgtgaatggctaggtgagggaagtaaaatcattataatttctagagatgagcatatattgaagaattatggagtagatgaagtttacaaagttcctctc |
31477363 |
T |
|
| Q |
117 |
ttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgagatactga |
216 |
Q |
| |
|
||| || | | | |||| ||||| |||||||||||||||||| |||| | |||| ||| || |||| || |||| ||| ||||| |
|
|
| T |
31477364 |
ttggattggactaactctcttcaattattgtgtcgaaaagctttcaaacttgatca---tattttgaatagttatgaagggttggttaatggcatactac |
31477460 |
T |
|
| Q |
217 |
attatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagaga |
316 |
Q |
| |
|
||||||| || || |||||||| ||||||| ||||||||| ||||||||||||||||| || | ||||||||| ||||||||||||||| | | ||| |
|
|
| T |
31477461 |
attatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcgggatatatctgaatggagaagtgcattggctagactcaaaga |
31477560 |
T |
|
| Q |
317 |
aagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgttttttcaac |
416 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||| ||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31477561 |
aagtccagagaaggatgttatggatgtgttgcgattaagttttgatgggctaaaggagcaggaaaaagaaatatttcttcatattgcttgttttttcaa- |
31477659 |
T |
|
| Q |
417 |
tcttggcccgagaaaata-gttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataagcatt |
515 |
Q |
| |
|
|| | | | ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31477660 |
tcaagtttgggggaaatatcttaaaaatgttttaaattgttgtggatttcatgccgatattggattaagagttctcattgataaatcacttataagcatt |
31477759 |
T |
|
| Q |
516 |
gatcattcaaagaga---attgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaa |
604 |
Q |
| |
|
| || || | || ||| | |||||| ||||||| |||||||||| ||| ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
31477760 |
g---atgcagatggatttattcacatgcatggtttgttggaagagctagggagagaaattgttcaagaaaattcaagcaaagagcaaagaaa |
31477848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 31019582 - 31019089
Alignment:
| Q |
16 |
atcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccact |
115 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
31019582 |
atcgtgaatgtttaggtgtagggagtagaatcattataatttctagagatgagcatatcttgaatgagtatggagttgatgaagtttacaaagttccact |
31019483 |
T |
|
| Q |
116 |
tttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgagatactg |
215 |
Q |
| |
|
|||||| || || | |||| |||||||||| ||||||||||||| |||| | |||||||||| |||| | || ||||| ||| | || |
|
|
| T |
31019482 |
cttgaatgagaccaactctcttcaattattttgtcaaaaagctttcaaacttgatca---tattatgagtggttatgataaactggcacttgacacgcta |
31019386 |
T |
|
| Q |
216 |
aattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagag |
315 |
Q |
| |
|
|||||| || || |||||||||||||||| ||||||||||||||||||||||||||| || | | ||||||| ||||||||||||||||||| || |
|
|
| T |
31019385 |
tcttatgccaatggcctaccactagcaattaaagtattgggctcatttttgtttggtcgagatatctccgaatggagaagtgcattggctagattgaaag |
31019286 |
T |
|
| Q |
316 |
aaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgttttttcaa |
415 |
Q |
| |
|
|||||||| | || ||| | ||||||||| ||| ||||||||||||||| | | || |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31019285 |
aaagtccaaacaaagatattatggatgtgttgcgattaagttttgatggattggagaatttggaaaaagaaatatttcttgatattgcttgttttttcga |
31019186 |
T |
|
| Q |
416 |
ctcttggcccgagaa--aat-agttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataagc |
512 |
Q |
| |
|
|| ||| || ||| ||| ||| |||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
31019185 |
---aaggtacgataaggaatgtcttacaaatattctaaattgttgtggatttcatccagatatcggattaagaattcttattgataaatcccttataagc |
31019089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 11 - 515
Target Start/End: Complemental strand, 31159036 - 31158535
Alignment:
| Q |
11 |
tgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagtt |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31159036 |
tgtgaatcgtgaatgcttaggtgcagggagtagaatcgttataatttctagagatgaacatatcttgaaagagtatggagttgatgtagtttacaaagtt |
31158937 |
T |
|
| Q |
111 |
ccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgaga |
210 |
Q |
| |
|
||||| |||||| | | | |||| || ||||||| ||||||||||||| |||| | ||||||||||| || | | || ||| || ||| | |
|
|
| T |
31158936 |
ccactcttgaatgggactaactctcttcaattgttttgtcaaaaagctttcaaacttgatca---tattatgagtagttttgataagttgacatttgaca |
31158840 |
T |
|
| Q |
211 |
tactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagatt |
310 |
Q |
| |
|
|||| | ||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||| | | ||||||||| ||||||||||||||||| |
|
|
| T |
31158839 |
tactcagttatgctaatggtctaccgctagcaattaaagtattgggatcatttttgtttggtcgagacatctatgaatggaaaagtgcattggctagatt |
31158740 |
T |
|
| Q |
311 |
gagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgtttt |
410 |
Q |
| |
|
||| |||||||| | || ||| ||||||||||| ||| |||||||||||| || || | | |||||||||||||||||||| |||||||||||| |
|
|
| T |
31158739 |
gagcaaaagtccaaacaaagatatcatggatgtgatgcgattaagttttgaagggttagaaaaattggaaaaagaaatatttcttgacattgcttgtttt |
31158640 |
T |
|
| Q |
411 |
ttcaactcttggcccgagaaaata-gttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttata |
509 |
Q |
| |
|
||| | || || || | || || |||| |||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |
|
|
| T |
31158639 |
ttc-attcagagcaagaagatttatgtccaaaaagttctaaattgctgtggattccatgctgatattggattaagagttctaattgataaatcacttcta |
31158541 |
T |
|
| Q |
510 |
agcatt |
515 |
Q |
| |
|
|||||| |
|
|
| T |
31158540 |
agcatt |
31158535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 31497201 - 31497798
Alignment:
| Q |
1 |
aaaaaatagttgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagt |
100 |
Q |
| |
|
||||||||||||| | |||||| ||||||| || || |||| ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| || |
|
|
| T |
31497201 |
aaaaaatagttgttcgtcgtgattggttagatgtgggtagtaaaatcattatcatttctagagacgagcatatactgaaagagtatggagtggatgaggt |
31497300 |
T |
|
| Q |
101 |
ttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttg |
200 |
Q |
| |
|
|||||||||||| |||||| || | | | |||| ||||| |||||||||||||||||| |||| | |||| ||||| |||| || || |
|
|
| T |
31497301 |
ttacaaagttcctcttttggattggactaactctcgacgattattatgtcgaaaagctttcaaaattgatca---tattttgagtggttatgaagggtta |
31497397 |
T |
|
| Q |
201 |
gcagatgagatactgaattatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcat |
300 |
Q |
| |
|
| ||| ||||| |||||| || || |||||||| ||||||| ||||||||| ||||||||||||| ||| || | | ||||||| | ||||||| |
|
|
| T |
31497398 |
gttaatggcgtactgcattatgtcaatggcctaccactggcaattaaagtattgggttcatttttgtttgatcgggatataattgaatgggaaagtgcat |
31497497 |
T |
|
| Q |
301 |
tggctagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatat |
400 |
Q |
| |
|
||| ||||||||||||||||||| | || ||||||||||||||| ||| | |||||||||||| ||||| | | ||| |||||| | |||||| |||| |
|
|
| T |
31497498 |
tggttagattgagagaaagtccaaacaaagatgtcatggatgtgttgcgttaaagttttgatgggctaaacaagatagataaagaattgtttcttcatat |
31497597 |
T |
|
| Q |
401 |
tgcttgttttttcaactcttggcccga--gaaaata-gttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgat |
497 |
Q |
| |
|
||||||||||||||| ||||| | || || |||||||| ||||||| |||||||||||||||| | |||| ||||||||| ||||||||||| |
|
|
| T |
31497598 |
tgcttgttttttcaa---ttggcataatgcaacgtatgttaaaaatgttctaaa-tgttgtggatttcatgttcatatcggattaagagttctcattgat |
31497693 |
T |
|
| Q |
498 |
aaatcacttataagcattgatcattcaaagagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagc |
597 |
Q |
| |
|
||||||||| | |||||||| ||||| ||| |||||||| | ||||| |||| ||||||||||| ||||| | ||||||||||||||| ||| |
|
|
| T |
31497694 |
aaatcacttgtgagcattga-----ggaagag-attcaaatgcatgatatgttgcaagaactaggcagaaatattgttcaagaaaattcaagcaaggaga |
31497787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 26 - 608
Target Start/End: Complemental strand, 31528181 - 31527602
Alignment:
| Q |
26 |
gttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccacttttgaatcag |
125 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| |||||| ||||| ||||| |||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
31528181 |
gttaggtgttgggagtagaatcattataatttcgagagatactcatatcttgaataggtatggagtggatgtagttttcaaagttccactcttgaatcaa |
31528082 |
T |
|
| Q |
126 |
gccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaattattatgagtaattatcaaaatttggcagatgagatactgaattatgcta |
225 |
Q |
| |
|
| | |||| |||||||| | | ||||||||||| ||| || |||| ||||||||||| | | |||| | |||||||||| |||||||||| |
|
|
| T |
31528081 |
actaattctcttcaattattttgccaacaagctttcaaacgtgataa---tattttgagtaattatgacgagttggtatatgagatactaaattatgcta |
31527985 |
T |
|
| Q |
226 |
aaggtctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagagaaagtccaga |
325 |
Q |
| |
|
| || |||||||||| |||| || |||||||||||||||||||||||| || | |||||||| ||||||||| ||||||||||||| | |||| | |
|
|
| T |
31527984 |
atggcttaccactagcgattaaagcattgggctcatttttgtttggtcgagatatttatgaatggagaagtgcattgactagattgagagacaatccaaa |
31527885 |
T |
|
| Q |
326 |
taatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaaagaaatatttcttgatattgcttgttttttcaactcttggccc |
425 |
Q |
| |
|
|| ||| || | ||||| ||| ||| ||||||||||| ||| | | | ||||||||||||||||| |||||||| ||||||||||| ||| | |
|
|
| T |
31527884 |
caaagatatcttcgatgtattgcgattgagttttgatgggctagagaacatggaaaaagaaatatttctcgatattgcatgttttttcaa----tggacg |
31527789 |
T |
|
| Q |
426 |
ga--gaa--aatagttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataagcattgatcat |
521 |
Q |
| |
|
| ||| | | |||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
31527788 |
taaggaagcacttgttaaaaatgtactgaattgttgtggatttcatgctgatattggattaagagttctcattgacaaatcacttataagcat--atcag |
31527691 |
T |
|
| Q |
522 |
tcaaa--gagaattgaaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaagtgg |
608 |
Q |
| |
|
||| | |||||||||||| |||||| ||||||| |||| ||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
31527690 |
aaaaaagtaagattgaaatgcatggtttgttagaagagctgggcaaaaaaattgttcaagaaaattcaagcaaagattcaagaaagtgg |
31527602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 284 - 518
Target Start/End: Original strand, 31502650 - 31502885
Alignment:
| Q |
284 |
tgaatggaagagtgcattggc-tagattgagagaaagtccagataatgatgtcatggatgtgctgcaattaagttttgatggtctaaatcatacagaaaa |
382 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| || || || || ||||||||||||||||| ||||||||||||||| ||| | | | ||||| |
|
|
| T |
31502650 |
tgaatggaaaagtgcattggcctagattgagagacagcccggacaaagatgtcatggatgtgctcagattaagttttgatgggctagaggagtctgaaaa |
31502749 |
T |
|
| Q |
383 |
agaaatatttcttgatattgcttgttttttcaactcttggcccgagaaaatagttaaaaacattctaaattgttgtggatttcatgctgatattggatta |
482 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | | |||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31502750 |
ggaaatatttcttcatattgcttgttttttcaatccgagcatggagaaatatgttaaaaatgttctaaattgttgtggatttcatgctgatataggatta |
31502849 |
T |
|
| Q |
483 |
agaattctcattgataaatcacttataagcattgat |
518 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31502850 |
agagttctcattgataaatcacttataagcattgat |
31502885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 31489959 - 31490070
Alignment:
| Q |
11 |
tgtgcatcgtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagtt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
31489959 |
tgtgaatcgtgaatggttaggtgcagggagtagaatcattataatttctggagatgaacatatcttgaaagagtatggagttgatgtagtttacagagtt |
31490058 |
T |
|
| Q |
111 |
ccacttttgaat |
122 |
Q |
| |
|
||||| |||||| |
|
|
| T |
31490059 |
ccactcttgaat |
31490070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 231 - 361
Target Start/End: Complemental strand, 31033586 - 31033457
Alignment:
| Q |
231 |
ctaccactagcaattacagtattgggctcatttttgtttggtcgtaatttgactgaatggaagagtgcattggctagattgagagaaagtccagataatg |
330 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| || |||||| ||| | ||||||||| ||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
31033586 |
ctaccaccggcaattaaagtattgggctcatttt-gtgtggtcgaaatatctctgaatggacaagtgcattggctagattgagagaaaatccaaataaag |
31033488 |
T |
|
| Q |
331 |
atgtcatggatgtgctgcaattaagttttga |
361 |
Q |
| |
|
|| | ||||||||||||| |||||||||||| |
|
|
| T |
31033487 |
atattatggatgtgctgcgattaagttttga |
31033457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 435 - 588
Target Start/End: Original strand, 31483536 - 31483689
Alignment:
| Q |
435 |
gttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcacttataagcattgatcattcaaagagaattg |
534 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||| || ||| | |||| |
|
|
| T |
31483536 |
gttaaaaatgttttaaattgttgtggatttcatcctgatattggattaagagttcttgttgataaatcacttataagaatttcagatgaaaataagattg |
31483635 |
T |
|
| Q |
535 |
aaatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaa |
588 |
Q |
| |
|
|||||||| | |||| ||||||| ||||||| |||||| | ||||||||||| |
|
|
| T |
31483636 |
aaatgcatggtgtgtttgaagagctgggcagaagaattgttcaagaaaattcaa |
31483689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 31502392 - 31502491
Alignment:
| Q |
19 |
gtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccactttt |
118 |
Q |
| |
|
||||||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
31502392 |
gtgaatggttaggtgg-ggtagtaaaatcattataatttctagagatgagcatatattgaaattttttggagtggatgaagtttacaaagttcctctttt |
31502490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 536 - 608
Target Start/End: Original strand, 31502921 - 31502993
Alignment:
| Q |
536 |
aatgcattctttgttgaaagagctaggcagaaaaattgtgcgagaaaattcaagcaaagagcaaagaaagtgg |
608 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
31502921 |
aatgcatggtttgttggaagagctaggaagaaaaattgttcaagaaaattcaagcaaagagccaagaaagtgg |
31502993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 31161434 - 31161332
Alignment:
| Q |
20 |
tgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccacttttg |
119 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| | || ||||||||||||||| ||||||| || || |||||||| || |||||||||||| | ||| |
|
|
| T |
31161434 |
tgaatggttatgtgcggggagtagaatcattataacttttagagatgagcatatcttgaaagtgtttgttgtggatgttgtctacaaagttccattgttg |
31161335 |
T |
|
| Q |
120 |
aat |
122 |
Q |
| |
|
||| |
|
|
| T |
31161334 |
aat |
31161332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 31245376 - 31245479
Alignment:
| Q |
21 |
gaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccacttttga |
120 |
Q |
| |
|
|||||| |||| ||||||||||||| || || ||||||||||||| ||||| |||| |||| ||||||| |||| ||| |||||||||| ||| ||| |
|
|
| T |
31245376 |
gaatggctaggcacagggagtagaatcatcataatttctagagatgttcatatcttgagagagcatggagtagatgaagtgtacaaagttcgactcttgg |
31245475 |
T |
|
| Q |
121 |
atca |
124 |
Q |
| |
|
|||| |
|
|
| T |
31245476 |
atca |
31245479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 31483128 - 31483223
Alignment:
| Q |
27 |
ttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagtatggagtggatgtagtttacaaagttccacttttgaat |
122 |
Q |
| |
|
|||| ||||||||| ||||| ||||| ||| |||||||| ||||| ||| |||||||||||||||| | | |||||||||||||| | |||||| |
|
|
| T |
31483128 |
ttagctgcagggagcagaatcattatagtttgtagagatgctcatatcttggaagagtatggagtggacgcactttacaaagttccattcttgaat |
31483223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 31033760 - 31033694
Alignment:
| Q |
19 |
gtgaatggttaggtgcagggagtagaattattatcatttctagagatgagcatatattgaaagagta |
85 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| | ||||||||||| ||||| ||||||||||| |
|
|
| T |
31033760 |
gtgaatgtttaggtgctgggagtagaattgttataacttctagagatgttcatatcttgaaagagta |
31033694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 31161238 - 31161187
Alignment:
| Q |
219 |
tatgctaaaggtctaccactagcaattacagtattgggctcatttttgtttg |
270 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
31161238 |
tatgctaatggcttaccactagcaattaaagtattgggctcttttttgtttg |
31161187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 505
Target Start/End: Original strand, 31490380 - 31490450
Alignment:
| Q |
435 |
gttaaaaacattctaaattgttgtggatttcatgctgatattggattaagaattctcattgataaatcact |
505 |
Q |
| |
|
|||||||| |||| || | ||||||||||||||||||||| ||||||||| |||| ||||||| ||||| |
|
|
| T |
31490380 |
gttaaaaatgttctgaactattgtggatttcatgctgatataggattaagagttcttgttgataactcact |
31490450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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