View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_low_72 (Length: 227)
Name: NF11599_low_72
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 12153508 - 12153696
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12153508 |
atgaagaaaattatagaaagcacataaaggtagcgtgattagaacagggaaaaacctgcagaaaggaatagatgtagcgtgattcaatagaaaggaataa |
12153607 |
T |
|
| Q |
116 |
atgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaa |
206 |
Q |
| |
|
| ||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| |||||| | | ||||||||||||||||| |
|
|
| T |
12153608 |
aggtataaatgtattgtgattctgtgatgagaa--gtgggaaaagattaaaagtggctctacaaaccatagctcccatagaaaaggttgaa |
12153696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12153316 - 12153496
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||| |
|
|
| T |
12153316 |
atgaataaaattagataaaacacataaaggtagcgtgattagaacatggaaaaacctgcagaa-------------gcgtgattctatagaaatgaataa |
12153402 |
T |
|
| Q |
116 |
atgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaaagtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
12153403 |
atgtataaatgtattgtgatttcgtgatgagaaatgtgggaaaagatt-aaagtgtctctaaaaaccacaccgcccatagaaaaggttgaaagtg |
12153496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12153914 - 12154105
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||||||||||| | |||||||||||||| || ||||||||||||| | ||| |||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12153914 |
atgaataaaattagagaaagcacataaaggctgcatgattagaacatgcataaaaatgcaaaaaggaatagatgtagcgtgattcaaaagaaattaataa |
12154013 |
T |
|
| Q |
116 |
atgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaaagtg |
210 |
Q |
| |
|
| |||||||| |||||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12154014 |
a-gtataaatatattgtgattccttgatgagaaa--tgggaaaagattaaaagtggctctaaaaaccacaatccccatagaaaaggttgaaagtg |
12154105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 12159824 - 12159936
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12159824 |
atgaataaaattagagaaaccacataaaggtagcgtggttagaacatgcaaaaacctgcataaaggaatagatgtagcgtgattaaatagaaaggaataa |
12159923 |
T |
|
| Q |
116 |
atgtataaatgta |
128 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
12159924 |
aggtataaatgta |
12159936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 12153712 - 12153898
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||| ||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
12153712 |
atgaataaaattagataaagcacataaaggtag--tgattagaatagggaaaaacccgcagaaaggactagatgtaatgtgattcaatagaaaggaataa |
12153809 |
T |
|
| Q |
116 |
atgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaa |
206 |
Q |
| |
|
| ||||||||||| ||||| | |||| |||||||| |||||||||||||| | ||| | ||||||| || ||||||||||||||||| |
|
|
| T |
12153810 |
aggtataaatgtaccatgattccttgatgagaaatgt--gaaaagattaaaagcgcctcgacaaaccaccacccccatagaaaaggttgaa |
12153898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12160028 - 12160224
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggta----gcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaagga |
111 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||| |||| | |||||||| |||| ||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
12160028 |
atgaataaaattagataaagcacattaaggtacgtagcgtgataagaatagggaaaaacttgcagaaaggaatatatgtcgcgtggttcaatagaaagga |
12160127 |
T |
|
| Q |
112 |
ataaatgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaaagtg |
210 |
Q |
| |
|
||||| | ||||| ||| |||||| | |||| |||| |||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
12160128 |
ataaaattttaaatatatcgtgattccatgatgagaa--gtgggaaaagattaaaagtggctctaaaaaccaccaccctcatataaaaggttgaaagtg |
12160224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 12160435 - 12160545
Alignment:
| Q |
18 |
gaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataaat |
117 |
Q |
| |
|
||||||||||| | ||| |||||||||| ||||||||||||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
12160435 |
gaataaaattagagaaaacacataaaggaagcgtgattagaacatggaaaaatctacaacaaggaatatatgtagcgtgattcaatagataggaataaag |
12160534 |
T |
|
| Q |
118 |
gtataaatgta |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
12160535 |
gtataaatgta |
12160545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12160236 - 12160421
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||||||||||| | |||||||||||||||| | |||||||||||| ||| ||||||||| | |||| ||||||||||||||| |||||| |
|
|
| T |
12160236 |
atgaataaaattagagaaagcacataaaggtaacttgattagaacatat-------tgctgaaaggaatatacgtagtgtgattcaatagaaaagaataa |
12160328 |
T |
|
| Q |
116 |
atgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaaagtg |
210 |
Q |
| |
|
|||||||||| |||||||||| | |||| || | ||||||||||||||| |||| ||||| ||||||| || |||||| |||||||||||||| |
|
|
| T |
12160329 |
atgtataaatatattgtgattccttgatgagga--gtgggaaaagattaatagtggctctacaaaccaccacccccataggaaaggttgaaagtg |
12160421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12159421 - 12159613
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataa |
115 |
Q |
| |
|
||||||||||||| | ||||||||| || | ||||||||| || |||||||||| || | ||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
12159421 |
atgaataaaattagagaaagcacatgaaatttgcgtgattataaaatggaaaaacgtgtagaaaaaaatatatgtagcgtgattcaatagaaacgaataa |
12159520 |
T |
|
| Q |
116 |
atgtataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaaagtg |
210 |
Q |
| |
|
| ||||||| ||| ||||| | |||| |||| || ||||||| ||||||||| | ||| |||||||| | | ||||||||||||||||||| |
|
|
| T |
12159521 |
aggtataaaagtaccatgattccttgat--gaaaagtaggaaaagtttaaaagtggcactacaaaccacatccccaatagaaaaggttgaaagtg |
12159613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 12154117 - 12154229
Alignment:
| Q |
16 |
atgaataaaattatataaagcacataaaggtagcgtgattag----aacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaagga |
111 |
Q |
| |
|
||||||||||||| | |||||||||||||||| | | |||| |||| |||||||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
12154117 |
atgaataaaattagagaaagcacataaaggtaactttattaattaaaacagggaaaaacctacagaaaggaatagatgtagcgtgattcaatagaaaaga |
12154216 |
T |
|
| Q |
112 |
ataaatgtataaa |
124 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
12154217 |
gtaaaggtataaa |
12154229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 12159628 - 12159812
Alignment:
| Q |
19 |
aataaaattatataaagcacataaaggtagcgtgattagaacatggaaaaacctgcataaaggaatagatgtagcgtgattcaatagaaaggaataaatg |
118 |
Q |
| |
|
|||||||||| | |||| ||| ||| |||| ||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
12159628 |
aataaaattagaaaaagaacacaaaagtagggtgattaaaaca-ggaaaaacctg----aaggaatagatgtagcgtaattcaatagaaaggaatacagg |
12159722 |
T |
|
| Q |
119 |
tataaatgtattgtgatttcgtgattagaaatgtgggaaaagattaaaagtgtctctaaaaaccacaacgtccatagaaaaggttgaaagtg |
210 |
Q |
| |
|
|||||||||| || ||| |||| || | ||||||||||||||||| || ||||| ||| ||| || | |||||||| |||||||||| |
|
|
| T |
12159723 |
tataaatgtaccgtcattcgttgat--gataagtgggaaaagattaaaaatggctctacaaatcaccacccctatagaaaatgttgaaagtg |
12159812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University