View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_low_8 (Length: 606)
Name: NF11599_low_8
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_8 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Original strand, 41746130 - 41746720
Alignment:
| Q |
16 |
ggatgatggctcatactagcggtcctcaatttctacttggaaggtcagtttcatgtactgcttctggtgctttttgtgttttgagtactttgacgttact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41746130 |
ggatgatggctcatactagcggtcctcaatttctacttggaaggtcagtttcatgtactgcttctggtgctttttgtgttttgagtactttgacgttact |
41746229 |
T |
|
| Q |
116 |
tgaagcgatgcttcgatcttacttgatgtcttggtcggttaaattttgtgctggtgaaagtgattacaaatggtctataatcttgattcttatagttcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41746230 |
tgaagcgatgcttcgatcttacttgatgtcttggtcggttaaattttgtgctggtgaaagtgattacaaatggtctataatcttgattcttatagttcaa |
41746329 |
T |
|
| Q |
216 |
gttgctgctgttggcgttggtactattgctcctgcttttaggtggtttgctgctgttaaatataggtatccaaatgtgagggaaaggagtcgcaagagaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41746330 |
gttgctgctgttggcgttggtactattgctcctgcttttaggtggtttgctgctgttaaatataggtgtccaaatgtgagggaaaggagtcgcaagagaa |
41746429 |
T |
|
| Q |
316 |
tttttcaagtagaaggttactggactgatagtttagtggtgtttcgagagagtccgattagttttcagattggtaaccggtggtttaggaagttggctca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41746430 |
tttttcaagtagaaggttactggactgatagtttagtggtgtttcgagagagtccgattagttttcggattggtaaccggtggtttaggaagttggctca |
41746529 |
T |
|
| Q |
416 |
tgatgtcaaactgattctgttgtgtttctgtattaaactacagatggggatggttagagtgtgtaaagctgcacaatttgtttcgatttaccctatgttg |
515 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41746530 |
tgatgtcaaactgattatgttgtgtttctgtattaaactacagatggggatggttagagtgtgtaaagctgcacaatttgtttcaatttaccctatgttg |
41746629 |
T |
|
| Q |
516 |
tggatcttgggattttgtgagtttttcaagaattggaaatcaaaattcggtggtatagattcgggtttaggaacaggcagaaagcaggacc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41746630 |
tggatcttgggattttgtgagtttttcaagaattggaaatcaaaattcggtggtatagattcgggtttaggaacaggcagaaagcaggacc |
41746720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 555
Target Start/End: Complemental strand, 41739624 - 41739085
Alignment:
| Q |
16 |
ggatgatggctcatactagcggtcctcaatttctacttggaaggtcagtttcatgtactgcttctggtgctttttgtgttttgagtactttgacgttact |
115 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
41739624 |
ggatgatggctcatacaagcagtcctcaatttatacttggaaggtcagtttcatgtactgcttctggtgctttttgtattttgagtactttgacgttaat |
41739525 |
T |
|
| Q |
116 |
tgaagcgatgcttcgatcttacttgatgtcttggtcggttaaattttgtgctggtgaaagtgattacaaatggtctataatcttgattcttatagttcaa |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
41739524 |
agaagcgatgcttcgatcttatttgatgtcttggacggttaaattttgcactggtgaatgtgattacaaatggtctacaatctttattcttatagttcaa |
41739425 |
T |
|
| Q |
216 |
gttgctgctgttggcgttggtactattgctcctgcttttaggtggtttgctgctgttaaatataggtatccaaatgtgagggaaaggagtcgcaagagaa |
315 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||||||||| || ||||||| |||||||| |||||||| ||||||||||||| ||||||| | ||||||| |
|
|
| T |
41739424 |
gtagctgctgttggtgttgggactattgctcctgctttgagatggtttgttgctgttagatataggtgtccaaatgtgaggaaaaggagctgtaagagaa |
41739325 |
T |
|
| Q |
316 |
tttttcaagtagaaggttactggactgatagtttagtggtgtttcgagagagtccgattagttttcagattggtaaccggtggtttaggaagttggctca |
415 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| |||||||| ||||||| ||||| || ||||||| ||| |||| ||||||||| ||||||||||||| |
|
|
| T |
41739324 |
tttttcaagtggaagggtattggactgataggctagtggtgattcgagaaagtcctataagttttcggatccgtaatcggtggtttcggaagttggctca |
41739225 |
T |
|
| Q |
416 |
tgatgtcaaactgattctgttgtgtttctgtattaaactacagatggggatggttagagtgtgtaaagctgcacaatttgtttcgatttaccctatgttg |
515 |
Q |
| |
|
||||| ||||| ||| ||||||||||| ||||||||||||||||| |||||||||| | |||||||||||| ||||| | |||| ||||||||||||| |
|
|
| T |
41739224 |
tgatgccaaacagatgctgttgtgtttgtgtattaaactacagatagggatggttatattgtgtaaagctgtacaatatatttcaatttaccctatgtgt |
41739125 |
T |
|
| Q |
516 |
tggatcttgggattttgtgagtttttcaagaattggaaat |
555 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
41739124 |
tggatcttgggattttgtgagttttgcaggacttggaaat |
41739085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University