View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_low_9 (Length: 588)
Name: NF11599_low_9
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8038868 - 8039171
Alignment:
| Q |
1 |
gcatcatcttatatctcctccttcctttctctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaa-gttgtatttttgaaccaag |
99 |
Q |
| |
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|||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
8038868 |
gcatcatcctatatctactcctttctttttctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaaagttgtaattttgaaccaag |
8038967 |
T |
|
| Q |
100 |
atttcaannnnnnnnnaattttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaattcttggtgag |
199 |
Q |
| |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8038968 |
atttcgaattttttt-aattttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaattcttggtgag |
8039066 |
T |
|
| Q |
200 |
ttaggattcaaagttctaatttctaatcaaaaaccaactttgcatttagattccactgtcattctcatcaataataactcctacatattcacatttgaac |
299 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8039067 |
ttaggattcaaagttctactttctaatcaaaaaccaactttgcatttagattccactgtcattctcatcaataataactcctacatattcacatttgaac |
8039166 |
T |
|
| Q |
300 |
catcg |
304 |
Q |
| |
|
||||| |
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|
| T |
8039167 |
catcg |
8039171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 8026786 - 8027077
Alignment:
| Q |
5 |
catcttatatctcctccttcctttctctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaagttgtatttttgaaccaagatttc |
104 |
Q |
| |
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|||| ||||| ||||| ||||||| ||| ||||| | | |||||||||||| |||||||||||||| |||||||| || ||| |||| ||||||||||| |
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| T |
8026786 |
catcctatatttcctctttcctttttcttataactgagcaagtgaaatcatcgatgattttgatgctcttgtcaaggt-gtacttttaaaccaagattt- |
8026883 |
T |
|
| Q |
105 |
aannnnnnnnnaattttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaattcttggtgagttagg |
204 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8026884 |
agaattttcttaattttcacttaagggatcgatatagtgaagtgttaaaatgatttagaagtatacacagcttgagcaaaggaattcttggtgagttagg |
8026983 |
T |
|
| Q |
205 |
attcaaagttctaatttctaatcaaaaaccaactttgcatttagattccactgtcattctcatcaataataactcctacatattcacatttgaaccatc |
303 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||| ||| || | ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8026984 |
attcaaagttctaatttttaatcaaaaaccaattttgcatatag--tctaatgtcattctcatc---aataactcctacatattcacatttgaaccatc |
8027077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 389 - 587
Target Start/End: Original strand, 8039256 - 8039465
Alignment:
| Q |
389 |
ggttgtatttttattacttgcatgtctattttt-------taaaaaacctaaactagttcatcgaaattgttgcttctctatctgttggttgagaaaaga |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8039256 |
ggttgtatttttattacttgcatgtctatttttattttttttaagaacctaaactagttcatcgaaattgttgcttctctatttgttggttgagaaaaga |
8039355 |
T |
|
| Q |
482 |
tgcttgattgagaataaccgagagttctaaaacata---ttctcttgaaaacttt-gtgctccaatctctcaaatttcttgatgcaaattttaacctagt |
577 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8039356 |
tgcttgattgagaataactgagagttctaaaacatattcttctcttgaaaactttggtgctccaatctctcaaatttcttgatgcaaattttaacctagt |
8039455 |
T |
|
| Q |
578 |
agtttttctg |
587 |
Q |
| |
|
|||||||||| |
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|
| T |
8039456 |
agtttttctg |
8039465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 8016872 - 8017161
Alignment:
| Q |
5 |
catcttatatctcctccttcctttctctcataaccgtgtaagtgaaatcattgatgattttgatgcacttgtcaaagttgtatttttgaaccaagatttc |
104 |
Q |
| |
|
|||| ||||||| | ||||||||| ||| ||||||| |||||||||||||| ||| |||||||||| ||||||||| ||||| |||||||||||||||| |
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|
| T |
8016872 |
catcctatatctacgccttcctttttcttataaccgagtaagtgaaatcatcgataattttgatgctcttgtcaaaattgtacttttgaaccaagatttt |
8016971 |
T |
|
| Q |
105 |
aannnnnnnnnaattttcacttaagggatcgatatagtgaagtgttaaaatgatatagaagtatacaaagcttgagcaaaggaa-ttcttggtgagttag |
203 |
Q |
| |
|
| ||||||| |||||||| || || |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
8016972 |
gaattttctt-aattttc-cttaaggggtcaatgaagtgaagtgttaaaatgatatagaagtataaaaagcttgagcaaaagaacttcttggtgagttag |
8017069 |
T |
|
| Q |
204 |
gattcaaagttctaatttctaatcaaaaaccaactttgcatttagattccactgtcattctcatcaataataactcctacatattcacatttgaac |
299 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| | |||| | ||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
8017070 |
gattcaaagttctaatttctactc-aaaaccaactttgtgcatgaattctaatgtcattctcatc---aataactcctacaaattcacatttgaac |
8017161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 390 - 553
Target Start/End: Original strand, 8027162 - 8027331
Alignment:
| Q |
390 |
gttgtatttttattacttgcatgtctat-------tttttaaaaaacctaaactagttcatcgaaattgttgcttctctatctgttggttgagaaaagat |
482 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| || |||||||| || | |||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
8027162 |
gttgtatttttattacttgcatatctatattttttttttttaagaacctaaattaatccatcgaaattgttgctcgtctatttgttggttgagaaaagat |
8027261 |
T |
|
| Q |
483 |
gcttgattgagaataaccgagagttctaaaacatattctcttgaaaacttt-gtgctccaatctctcaaatt |
553 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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|
| T |
8027262 |
gcttgattgagaataactaagagttctaaaacatat--tcttgaaaactttggtgcttcaatctctcaaatt |
8027331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 171 - 304
Target Start/End: Original strand, 49591908 - 49592039
Alignment:
| Q |
171 |
aaagcttgagcaaaggaattctt-ggtgagttaggattcaaagttctaatttctaatcaaaaaccaactttgcatttagattccactgtcattctcatca |
269 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||||| |||| |||||| | || |||||||||||||||| | || || | ||||||||||||| |
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|
| T |
49591908 |
aaagcttgagcaaaagaattgtttggtgagttaggattcaatgttccaatttccactccaaaaccaactttgcatatggagtctaatgtcattctcatc- |
49592006 |
T |
|
| Q |
270 |
ataataactcctacatattcacatttgaaccatcg |
304 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||| |
|
|
| T |
49592007 |
--aataactcctgcaaattcacatttgaaacatcg |
49592039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 567
Target Start/End: Original strand, 49592236 - 49592344
Alignment:
| Q |
459 |
tctatctgttggttgagaaaagatgcttgattgagaataaccgagagttctaaaacatattctcttgaaaactttg-tgctccaatctctcaaatttctt |
557 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | ||||| ||||||| |||| |||||||| |||||||||||| |||| |||| |||||||||||| |
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|
| T |
49592236 |
tctatttgttggttgagaaaagatgattgacttagaatggtagagagttttaaagcatattct-ttgaaaactttggtgctaaaatccctcaaatttctt |
49592334 |
T |
|
| Q |
558 |
gatgcaaatt |
567 |
Q |
| |
|
|||||||||| |
|
|
| T |
49592335 |
gatgcaaatt |
49592344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 273
Target Start/End: Complemental strand, 7236051 - 7235902
Alignment:
| Q |
126 |
taagggatcgatatagtgaagtgttaaaatgatat-agaagtatacaaagcttgagcaaaggaattctt-ggtgagttaggattcaaagttctaatttct |
223 |
Q |
| |
|
||||||||| || || ||||||||| ||| |||| || ||||| |||||||||||||| ||||| || ||||||||||||||||| |||| |||||| |
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|
| T |
7236051 |
taagggatcaatgaagcgaagtgttacaattatattagcagtatcaaaagcttgagcaaaagaattgtttggtgagttaggattcaatgttccaatttcc |
7235952 |
T |
|
| Q |
224 |
aatcaaaaaccaactttgcatttagattccactgtcattctcatcaataa |
273 |
Q |
| |
|
| || |||||||||||||||| | || || | |||||||||||||||||| |
|
|
| T |
7235951 |
actccaaaaccaactttgcatatggagtctaatgtcattctcatcaataa |
7235902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 567
Target Start/End: Complemental strand, 7235809 - 7235701
Alignment:
| Q |
459 |
tctatctgttggttgagaaaagatgcttgattgagaataaccgagagttctaaaacatattctcttgaaaactttg-tgctccaatctctcaaatttctt |
557 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | | ||| ||||||| |||| |||||||| |||||||||||| |||| |||| |||||||||||| |
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|
| T |
7235809 |
tctatttgttggttgagaaaagatgattgacttaaaatggttgagagttttaaagcatattct-ttgaaaactttggtgctaaaatccctcaaatttctt |
7235711 |
T |
|
| Q |
558 |
gatgcaaatt |
567 |
Q |
| |
|
|||||||||| |
|
|
| T |
7235710 |
gatgcaaatt |
7235701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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