View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_high_12 (Length: 361)
Name: NF1159_high_12
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 7798536 - 7798723
Alignment:
| Q |
4 |
atttgtttccgaagagtttcgacttgttcattggtcatcacattcacttgcatcattccaacattcgcgttctgattaaaaccgttcctctgccactcca |
103 |
Q |
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| T |
7798536 |
atttgtttccgaagagtttcaacttgttcattggtcatcacattcacttgcatcattccaacattcgcgttctgattaaaaccgttcctctgccactcca |
7798635 |
T |
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| Q |
104 |
tctctttctttttctgtaaaataaaaagcgattaatgattttcatttctatnnnnnnngtgatctgtgagaagaagaaaccaatggtg |
191 |
Q |
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| T |
7798636 |
tctctttctttttctgtaaaataaaaagcgattaatgattttcatttctataaaaaaagtgatctgtgagaagaagaaaccaatggtg |
7798723 |
T |
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Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 190 - 340
Target Start/End: Original strand, 7798764 - 7798894
Alignment:
| Q |
190 |
tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaataagagttgtagttttgctctattaacaatga |
289 |
Q |
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| T |
7798764 |
tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaa--------------------tattaacaatga |
7798843 |
T |
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| Q |
290 |
tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatg |
340 |
Q |
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| T |
7798844 |
tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatg |
7798894 |
T |
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