View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_high_14 (Length: 358)
Name: NF1159_high_14
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 52 - 259
Target Start/End: Complemental strand, 34225461 - 34225255
Alignment:
| Q |
52 |
atcatcacacaaataagagagagaaaaacaaactcactttacaactgagtaagcagggttgtcttgcaaaggattaggatatgtctgcagtaataccaag |
151 |
Q |
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| T |
34225461 |
atcatcacacaaataagagagagaaaaacaaactcactttacaactgagtaagcagggttgtcttgcaaaggattaggatatgtctgcagtaacaccaag |
34225362 |
T |
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| Q |
152 |
tacaattaaaccatatattaatcatctttattccttaaccaacnnnnnnnngcaaactttaatcttttccaccatgcaattcaagatatatatttcacta |
251 |
Q |
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| T |
34225361 |
tacaattaaaccatatattaataatctttattccttaaccaac-aaaaaaagcaaactttaatcttttccaccatgcaattcaagatataaatttcacta |
34225263 |
T |
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| Q |
252 |
aaattaat |
259 |
Q |
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|||||||| |
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| T |
34225262 |
aaattaat |
34225255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 34225199 - 34225165
Alignment:
| Q |
324 |
gtggcataaccaaattgttcatatctgatctgtta |
358 |
Q |
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| T |
34225199 |
gtggcataaccaaattattcatatctgatctgtta |
34225165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 42980660 - 42980718
Alignment:
| Q |
81 |
aaactcactttacaactgagtaagcagggttgtcttgcaaaggattaggatatgtctgc |
139 |
Q |
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| T |
42980660 |
aaacttacttgacaactgaataagcaggattgtcttgcaatggattagaatatgtctgc |
42980718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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