View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_high_19 (Length: 328)

Name: NF1159_high_19
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_high_19
NF1159_high_19
[»] chr3 (3 HSPs)
chr3 (1-300)||(49972729-49973023)
chr3 (216-299)||(49856484-49856567)
chr3 (59-105)||(49979167-49979213)
[»] scaffold0543 (1 HSPs)
scaffold0543 (216-300)||(2001-2085)
[»] scaffold0492 (1 HSPs)
scaffold0492 (216-300)||(3547-3631)
[»] chr7 (2 HSPs)
chr7 (216-300)||(19369820-19369904)
chr7 (2-38)||(7913834-7913870)
[»] chr2 (1 HSPs)
chr2 (2-45)||(41508139-41508182)
[»] chr1 (1 HSPs)
chr1 (2-39)||(10799268-10799305)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 49972729 - 49973023
Alignment:
Q  1 tgagtaaagattaatataacaactaattactaacatttttcattcnnnnnnnnttgacaaaaaagtaattgcagttcaaaagaggagggagaggaacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  49972729 tgagtaaagattaatataacaactaattactaacatttttcattcaaaaaaa-ttgacaaaaaagtaattgcagttcaaaagaggagggagaggaacaaa 49972827  T
Q  101 caattaatttcattgctacctaaacacatccactttgtttatcactaatcaagtcaagatagtagttcaacacttgtaatgtaaatatatatatcataat 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  49972828 caattaatttcattgctacccaaacacatccactttgtttatcactaatcaagtcaagatagtagttcaacacttgtaatgtaa----atatatcataat 49972923  T
Q  201 gcatgcatgtagcagtcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49972924 gcatgcatgtagcagtcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatct 49973023  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 49856484 - 49856567
Alignment:
Q  216 tcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatc 299  Q
    ||||||||||| ||||  |||||||||||||||| || || || |||||||||||  |  |||||||| ||||||| |||||||    
T  49856484 tcaaataaatagaagtggacatgtggttgaattcattgggaacgaagataattccaatgacatttggatctttgtatttgtatc 49856567  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 49979167 - 49979213
Alignment:
Q  59 aaaaaagtaattgcagttcaaaagaggagggagaggaacaaacaatt 105  Q
    |||||| |||||| |||||||||||||||||||| |||| |||||||    
T  49979167 aaaaaactaattgtagttcaaaagaggagggagatgaacgaacaatt 49979213  T

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Target: scaffold0543 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 2001 - 2085
Alignment:
Q  216 tcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatct 300  Q
    ||||||||||||||||| ||||||| |||||||| || |||||||| |||||||| |   |||||||||||||||| ||||||||    
T  2001 tcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttggagctttgtatttgtatct 2085  T

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Target: scaffold0492 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 3547 - 3631
Alignment:
Q  216 tcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatct 300  Q
    ||||||||||||||||| ||||||| |||||||| || |||||||| |||||||| |   |||||||||||||||| ||||||||    
T  3547 tcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttggagctttgtatttgtatct 3631  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 19369820 - 19369904
Alignment:
Q  216 tcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatct 300  Q
    ||||||||||||||||| ||||| ||| |||||| || |||| | ||||||||||||  || ||||||| |||||| ||||||||    
T  19369820 tcaaataaataaaagttgacatgcggtggaattcctttggcagagagataattccttgatcgtttggagttttgtatttgtatct 19369904  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 7913870 - 7913834
Alignment:
Q  2 gagtaaagattaatataacaactaattactaacattt 38  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  7913870 gagtaaatattaatataacaactaactactaacattt 7913834  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 41508182 - 41508139
Alignment:
Q  2 gagtaaagattaatataacaactaattactaacatttttcattc 45  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||    
T  41508182 gagtaaatattaatataacaactaattgctaacatttgtcattc 41508139  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 10799268 - 10799305
Alignment:
Q  2 gagtaaagattaatataacaactaattactaacatttt 39  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  10799268 gagtaaatattaatctaacaactaattactaacatttt 10799305  T

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