View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_high_22 (Length: 299)

Name: NF1159_high_22
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_high_22
NF1159_high_22
[»] chr7 (7 HSPs)
chr7 (1-298)||(21111537-21111834)
chr7 (1-298)||(18658659-18658956)
chr7 (9-298)||(21130505-21130794)
chr7 (1-131)||(21123369-21123499)
chr7 (79-226)||(21108109-21108256)
chr7 (79-226)||(21098490-21098637)
chr7 (85-180)||(29213149-29213244)
[»] chr4 (1 HSPs)
chr4 (1-298)||(39131942-39132239)
[»] chr3 (12 HSPs)
chr3 (70-209)||(26751133-26751272)
chr3 (76-209)||(26713967-26714100)
chr3 (70-209)||(26698809-26698948)
chr3 (70-209)||(26737197-26737336)
chr3 (27-209)||(26744171-26744347)
chr3 (70-209)||(26733972-26734111)
chr3 (85-233)||(47212387-47212535)
chr3 (85-212)||(26690342-26690469)
chr3 (85-212)||(26731653-26731780)
chr3 (82-212)||(26694503-26694633)
chr3 (76-176)||(47193415-47193515)
chr3 (76-155)||(9792536-9792615)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 21111537 - 21111834
Alignment:
Q  1 taagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111537 taagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 21111636  T
Q  101 ccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111637 ccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttc 21111736  T
Q  201 ggcaagaaattctccttctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111737 ggcaagaaattctccttctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctc 21111834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 18658659 - 18658956
Alignment:
Q  1 taagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 100  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18658659 taagctagaactttagctgttcctaaagcaatatcataccttttactccagtcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 18658758  T
Q  101 ccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  18658759 ccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttc 18658858  T
Q  201 ggcaagaaattctccttctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctc 298  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  18658859 agcaagaaattctccttctccttgtttagcttcatttaatctctttattgctgcatgtctttgatctggcaatgtacctctatatacaatccctcctc 18658956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 21130505 - 21130794
Alignment:
Q  9 aactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtac 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  21130505 aactctagctgttcctaaagcaatatcataccttttagtccaatcaagtgtgttggttttggatgaaagattttccgctaaagaaccattttccatgtac 21130604  T
Q  109 tcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaa 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||  | ||||||| |||||||| |||||||    
T  21130605 tcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaa 21130704  T
Q  209 attctccttctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctc 298  Q
    | |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||  |||||||    
T  21130705 actctccttctccttgtttagcttcattcaatctctttattgctgcatctctttgatccggcaatgtacctctatatacaactcctcctc 21130794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21123369 - 21123499
Alignment:
Q  1 taagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21123369 taagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 21123468  T
Q  101 ccatgtactcatataccaaaattctatgctt 131  Q
    |||||||||||||||||||||||||||||||    
T  21123469 ccatgtactcatataccaaaattctatgctt 21123499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 21108256 - 21108109
Alignment:
Q  79 ttttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaa 178  Q
    ||||| |||||||| ||||||||||||||||| || ||||| | |||||  || || ||||| ||||||||||||||||| ||||| |||||||| ||||    
T  21108256 ttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaa 21108157  T
Q  179 gccgtccaatgatacttacttcggcaagaaattctccttctccttgtt 226  Q
    ||| ||||||||| | |||||| || |||||||| |||||||||||||    
T  21108156 gccttccaatgattcctacttcagctagaaattcaccttctccttgtt 21108109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 21098637 - 21098490
Alignment:
Q  79 ttttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaa 178  Q
    ||||| |||||||| ||||||||||||||||| || ||||| | |||||  || || ||||| ||||||||||||||||| ||||| |||||||| ||||    
T  21098637 ttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaa 21098538  T
Q  179 gccgtccaatgatacttacttcggcaagaaattctccttctccttgtt 226  Q
    ||| ||||||||| | |||||| || |||||||| ||||| |||||||    
T  21098537 gccttccaatgattcctacttcagctagaaattcaccttcaccttgtt 21098490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 29213149 - 29213244
Alignment:
Q  85 gctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagc 180  Q
    |||||||| ||||| | |||| ||||||| || || ||||||||  | || || |||||||| ||||||| ||| ||||| |||||||||||||||    
T  29213149 gctaaagaaccattatacatgaactcatagacaaacattctatgtattccctctgcacaataaccccacaattcaatcaaattcatgtggttaagc 29213244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 39132239 - 39131942
Alignment:
Q  1 taagcaagaactctagctgttcctaaagcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccatttt 100  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |||| |    
T  39132239 taagctaggactctagctgttcctaaagcaatatcataccttttactccaatcaagcatgttagttttagatgaaagattttcagctaaagagtcattct 39132140  T
Q  101 ccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttc 200  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| || |||| ||| ||||| ||||||||    
T  39132139 tcatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttc 39132040  T
Q  201 ggcaagaaattctccttctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctc 298  Q
     |||||||| |||||||| ||||| ||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||||   ||||||| ||||||||    
T  39132039 agcaagaaactctccttccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctc 39131942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 26751133 - 26751272
Alignment:
Q  70 gatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttca 169  Q
    ||||| ||||| ||||||||||  || ||||||||||||||||| ||||| | ||||||||| || ||||||||||| ||||||||  | ||||| ||||    
T  26751133 gatgagagattatcagctaaagtacccttttccatgtactcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattca 26751232  T
Q  170 tgtggttaagccgtccaatgatacttacttcggcaagaaa 209  Q
    |||||||||||| ||||||||| || ||||||||||||||    
T  26751233 tgtggttaagccttccaatgatgctaacttcggcaagaaa 26751272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 26713967 - 26714100
Alignment:
Q  76 agattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggt 175  Q
    ||||| ||||||||||  |||||||||||||||||||| ||||| | | |||| || || ||||||||||| ||||||||| | ||||| ||||||||||    
T  26713967 agattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggt 26714066  T
Q  176 taagccgtccaatgatacttacttcggcaagaaa 209  Q
    |||||| ||||||||| || ||||| ||||||||    
T  26714067 taagccttccaatgatgctaacttctgcaagaaa 26714100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 26698809 - 26698948
Alignment:
Q  70 gatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttca 169  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||| ||||| | ||| || || || || |||||||| ||||||||| ||||||| ||||    
T  26698809 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattca 26698908  T
Q  170 tgtggttaagccgtccaatgatacttacttcggcaagaaa 209  Q
    |||| ||||||| ||||||||| || ||||| ||||||||    
T  26698909 tgtgattaagccttccaatgatgctaacttcagcaagaaa 26698948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 26737197 - 26737336
Alignment:
Q  70 gatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttca 169  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||| ||||| | | |||| || || ||||||||||| ||||||||| | || || ||||    
T  26737197 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattca 26737296  T
Q  170 tgtggttaagccgtccaatgatacttacttcggcaagaaa 209  Q
    |||||||||||| ||||||||| || ||||| ||||||||    
T  26737297 tgtggttaagccttccaatgatgctaacttctgcaagaaa 26737336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 26744171 - 26744347
Alignment:
Q  27 agcaatatcataccttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattcta 126  Q
    |||||| | ||||||||||||||||||||||   ||| ||   ||||||||||| || |||||||  || ||||||||| |||| || ||||| | ||||    
T  26744171 agcaatgttataccttttactccaatcaagt---ttattt---gatgaaagattatcggctaaagtaccgttttccatgcactcgtaaaccaacaatcta 26744264  T
Q  127 tgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaa 209  Q
    || || || ||||||||||| ||||||||  | || ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  26744265 tgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 26744347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 26733972 - 26734111
Alignment:
Q  70 gatgaaagattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttca 169  Q
    ||||| ||||| ||||||||||  |||||||||||||||||||| ||||| | ||| || || || || |||||||| ||||||||| ||||||| ||||    
T  26733972 gatgagagattatcagctaaagtaccattttccatgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattca 26734071  T
Q  170 tgtggttaagccgtccaatgatacttacttcggcaagaaa 209  Q
    |||| ||||||| ||||||||| || |||||  |||||||    
T  26734072 tgtgattaagccttccaatgatgctaacttcaacaagaaa 26734111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 47212387 - 47212535
Alignment:
Q  85 gctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtc 184  Q
    |||||||| ||||| |||||| ||||||| || |  |||||||| || || || |||||||| ||||||||||| ||||| |||||||||||||||  ||    
T  47212387 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttc 47212486  T
Q  185 caatgatacttacttcggcaagaaattctccttctccttgtttagcttc 233  Q
    ||||| | |||||||| || ||||| ||| |||| ||||| || |||||    
T  47212487 caatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 47212535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 26690469 - 26690342
Alignment:
Q  85 gctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtc 184  Q
    |||||||| || ||||||||||||||| | || || | ||| || || || || |||||||| ||||||||  | ||||| |||||||||||||||| ||    
T  26690469 gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc 26690370  T
Q  185 caatgatacttacttcggcaagaaattc 212  Q
    ||||||  || ||||| |||||||||||    
T  26690369 caatgacgctaacttcagcaagaaattc 26690342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 26731780 - 26731653
Alignment:
Q  85 gctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtc 184  Q
    |||||||| || ||||||||||||||| | || || | ||| || || || || |||||||| ||||||||  | ||||| |||||||||||||||| ||    
T  26731780 gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc 26731681  T
Q  185 caatgatacttacttcggcaagaaattc 212  Q
    ||||||  || ||||| |||||||||||    
T  26731680 caatgacgctaacttcagcaagaaattc 26731653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 26694633 - 26694503
Alignment:
Q  82 tcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagcc 181  Q
    |||| |||||| || ||||||||||||||| | || || | ||| || || || || |||||||| ||||||||  | ||||| ||||||||||||||||    
T  26694633 tcagttaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagcc 26694534  T
Q  182 gtccaatgatacttacttcggcaagaaattc 212  Q
     ||||||||  || | ||| |||||||||||    
T  26694533 ttccaatgacgctaagttcagcaagaaattc 26694503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 47193515 - 47193415
Alignment:
Q  76 agattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggt 175  Q
    ||||| || |||||||| |||| ||| || |||||||| |||||||  ||||| || |||||| |||||||||||||||| || || || ||||| ||||    
T  47193515 agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt 47193416  T
Q  176 t 176  Q
    |    
T  47193415 t 47193415  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 9792615 - 9792536
Alignment:
Q  76 agattttcagctaaagatccattttccatgtactcatataccaaaattctatgcttaccttcagcacaatatccccacat 155  Q
    ||||| ||| |||| || |||| |||||| |||||||| ||||||| |||||  || |||||| ||||||||||||||||    
T  9792615 agattctcaactaatgaaccatgttccatatactcataaaccaaaagtctatttttcccttcaacacaatatccccacat 9792536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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