View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_high_27 (Length: 276)

Name: NF1159_high_27
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_high_27
NF1159_high_27
[»] scaffold2079 (1 HSPs)
scaffold2079 (4-267)||(96-355)
[»] chr7 (2 HSPs)
chr7 (4-216)||(6241962-6242168)
chr7 (234-267)||(6241912-6241945)
[»] chr2 (7 HSPs)
chr2 (146-213)||(15641840-15641907)
chr2 (60-99)||(10850715-10850754)
chr2 (60-99)||(10878229-10878268)
chr2 (149-199)||(15622006-15622057)
chr2 (149-199)||(15643846-15643897)
chr2 (149-199)||(15652896-15652947)
chr2 (146-216)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (60-98)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (146-210)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 355 - 96
Alignment:
Q  4 atgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgtc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  355 atgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgcc 256  T
Q  104 tgcgttccaaaatattcttttatattcacnnnnnnnnatcgatgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaa 203  Q
    ||||||||||||||||||||||||||||         ||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  255 tgcgttccaaaatattcttttatattca-ttttttttatccatgttattttgcaagagactatttctttctccaaacttcaaagaggttttcctacaaaa 157  T
Q  204 ttgatttgctacaccgaatggnnnnnnnnnctcttttatcttctactcaacttcttcttcatct 267  Q
    |||||||||||||||| ||           ||||||||||||||||| ||||||||||||||||    
T  156 ttgatttgctacaccggat---ttttttttctcttttatcttctacttaacttcttcttcatct 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 6242168 - 6241962
Alignment:
Q  4 atgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgattaagtatagtaggctatcttaatattgcaaaaaagtagtgtc 103  Q
    |||||| |||| ||||| |||||||| ||||||||||||||||||       |||| ||||||||||||| ||| ||||||||||||||||||||||| |    
T  6242168 atgttgatcacgtatggacggattcgcggtacgcaatatgagaaa-------cccggttaagtatagtagactaacttaatattgcaaaaaagtagtgcc 6242076  T
Q  104 tgcgttccaaaatattcttttatattcacnnnnnnnn-atcgatgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaa 202  Q
      |||| ||||||||||||||| ||||||         |||| | ||||||||||||||||||||||||||||| | |||||||||||||||| || |||    
T  6242075 cacgtttcaaaatattcttttacattcactttttttttatcgttattattttgcaagagactatctctttctccaaacttcaaagaggttttcttaaaaa 6241976  T
Q  203 attgatttgctaca 216  Q
    ||||||||||||||    
T  6241975 attgatttgctaca 6241962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 6241945 - 6241912
Alignment:
Q  234 ctcttttatcttctactcaacttcttcttcatct 267  Q
    ||||||||||||||||| ||||||||||||||||    
T  6241945 ctcttttatcttctacttaacttcttcttcatct 6241912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 15641907 - 15641840
Alignment:
Q  146 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgct 213  Q
    |||||||||||||||| |  |||||| |||| ||||||||||| ||||||||||| |||| |||||||    
T  15641907 tgttattttgcaagaggcgttctcttcctccaagcttcaaagatgttttcctacagaatttatttgct 15641840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 10850715 - 10850754
Alignment:
Q  60 attaagtatagtaggctatcttaatattgcaaaaaagtag 99  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10850715 attaagtatagtaagctatcttaatattgcaaaaaggtag 10850754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 10878229 - 10878268
Alignment:
Q  60 attaagtatagtaggctatcttaatattgcaaaaaagtag 99  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10878229 attaagtatagtaagctatcttaatattgcaaaaaggtag 10878268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 15622057 - 15622006
Alignment:
Q  149 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 199  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15622057 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15622006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 15643897 - 15643846
Alignment:
Q  149 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 199  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15643897 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15643846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 15652947 - 15652896
Alignment:
Q  149 tattttgcaagagac-tatctctttctcctagcttcaaagaggttttcctac 199  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||||    
T  15652947 tattttgcaagagacgtttctcttcctccaagcttcaaagaggttttcctac 15652896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 43724873 - 43724943
Alignment:
Q  146 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgatttgctaca 216  Q
    ||||||||||||||||||  ||||||||||| | ||| ||| |||||||||  ||||| | ||||||||||    
T  43724873 tgttattttgcaagagacgttctctttctccaaactttaaataggttttcccgcaaaaattatttgctaca 43724943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 16724148 - 16724110
Alignment:
Q  60 attaagtatagtaggctatcttaatattgcaaaaaagta 98  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  16724148 attaagtatagtaaactatcttaatattgcaaaaaagta 16724110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 10682669 - 10682732
Alignment:
Q  146 tgttattttgcaagagactatctctttctcctagcttcaaagaggttttcctacaaaattgattt 210  Q
    ||||||||||||||| |   ||||||||||| |||||||||||| |||| |||||||||| ||||    
T  10682669 tgttattttgcaagacatgttctctttctccaagcttcaaagagatttt-ctacaaaatttattt 10682732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University