View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_high_3 (Length: 572)

Name: NF1159_high_3
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_high_3
NF1159_high_3
[»] chr4 (5 HSPs)
chr4 (305-483)||(19799000-19799176)
chr4 (292-491)||(8124815-8125013)
chr4 (366-483)||(19807113-19807230)
chr4 (305-491)||(17127241-17127426)
chr4 (305-476)||(17132133-17132303)
[»] chr1 (2 HSPs)
chr1 (84-216)||(47718582-47718716)
chr1 (29-216)||(47746326-47746511)
[»] chr2 (3 HSPs)
chr2 (303-491)||(34977444-34977630)
chr2 (366-491)||(19913665-19913790)
chr2 (389-491)||(19915273-19915375)
[»] chr6 (1 HSPs)
chr6 (402-444)||(15483602-15483644)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 305 - 483
Target Start/End: Original strand, 19799000 - 19799176
Alignment:
Q  305 aaagtgtgaaa-tgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatctaagaaggattgtactatcctta 403  Q
    ||||||||||| | ||||||||||| || ||| |||||||||||| ||||  ||||||| | ||||| |||||||||| |  ||||||||| |||||| |    
T  19799000 aaagtgtgaaaattattcattaact-gaaaaaggattacaagatagtata--tatactagatgctaattgtactatcttaagaggattgtattatcctca 19799096  T
Q  404 agctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaactatcatt 483  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  19799097 agctaaagtacaatgtaaaactagttacttgtactacaagatttctcactattatccttattataatttgaactatcatt 19799176  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 292 - 491
Target Start/End: Original strand, 8124815 - 8125013
Alignment:
Q  292 taagaatgggataaaagtgtgaaatgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatctaagaaggatt 391  Q
    |||||||| |||||||||||||||||||||||||||  || ||| ||||||||| || ||||  ||||||| | ||||| ||||||| || |  ||||||    
T  8124815 taagaatgtgataaaagtgtgaaatgattcattaacc-gaaaaaggattacaaggtagtata--tatactagatgctaattgtactaccttaagaggatt 8124911  T
Q  392 gtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatcc--ttattatcatttgaactatcattatgcaa 489  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||| || ||||||   ||||||||||||||||||||||||| ||    
T  8124912 gtactatcctcaagctaaagtacaatgtaaatctagttacttgtactacaagttttcttgctgttatccatatattatcatttgaactatcattatgtaa 8125011  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 366 - 483
Target Start/End: Original strand, 19807113 - 19807230
Alignment:
Q  366 gctaaatgtactatctaagaaggattgtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttatt 465  Q
    ||||| |||||||||| |  |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||||    
T  19807113 gctaattgtactatcttaagaggattgtactatcctcaagctaaagtacaatgtaaaactagttacttgtgctacaaaatttctcactattatccttatt 19807212  T
Q  466 atcatttgaactatcatt 483  Q
    ||||||||||||||||||    
T  19807213 atcatttgaactatcatt 19807230  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 491
Target Start/End: Complemental strand, 17127426 - 17127241
Alignment:
Q  305 aaagtgtgaa-atgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatct--aagaaggattgtactatcct 401  Q
    |||||||||| ||||||||||||||  | || || ||||| |||| |||||| |  ||| | | ||||||||||||||  |||| | |||||||||||||    
T  17127426 aaagtgtgaatatgattcattaactgaaaaagtggttacaggatagtatataaa--ctatatgataaatgtactatctctaaga-gaattgtactatcct 17127330  T
Q  402 taagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaactatcattatgcaata 491  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||||| | ||| |||| ||||||  |||||||| | ||| |||||||    
T  17127329 taagctagagtaaaatgtaaa-ctaattacttgtactacaagttttctcattatcatccctattatgctttgaactgttattctgcaata 17127241  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 476
Target Start/End: Complemental strand, 17132303 - 17132133
Alignment:
Q  305 aaagtgtgaa-atgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatct--aagaaggattgtactatcct 401  Q
    |||||||||| ||||||||||||||  | || || ||||| |||| |||||| |  ||| | | ||||||||||||||  |||| | |||||||||||||    
T  17132303 aaagtgtgaatatgattcattaactgaaaaagtggttacaggatagtatataaa--ctatatgataaatgtactatctctaaga-gaattgtactatcct 17132207  T
Q  402 taagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaac 476  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||||| | ||| |||| ||||||  |||||||    
T  17132206 taagctagagtaaaatgtaaa-ctaattacttgtactacaagttttctcattatcatccctattatgctttgaac 17132133  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 47718582 - 47718716
Alignment:
Q  84 aaaggtcatgtgagtaatgtttcaaaagtgagactttcggatcaatggatttagtagtagcttttgttatgggctccaaatgcattgcatga----aaac 179  Q
    ||||||| | ||||||||||||||||||||||||||| || ||||  |||||||||||||||||| |||||||||||| |||||||||||||    ||||    
T  47718582 aaaggtcgtttgagtaatgtttcaaaagtgagacttttgggtcaa--gatttagtagtagcttttattatgggctccatatgcattgcatgaaaacaaac 47718679  T
Q  180 aagtacaagatggaaaatgcttggaagttcttcaatt 216  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  47718680 aagtacaagatggaaaatgctcggaagtttttcaatt 47718716  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 47746326 - 47746511
Alignment:
Q  29 aaatttgtggtttgaaacaaagcttttagacttttattatcattccagtcgtggaaaaggtcatgtgagtaatgtttcaaaagtgagactttcggatcaa 128  Q
    |||| |||||||||| ||||||||| ||| |||||||   ||||| | | |||  ||||||| | |||||||||||||||| |||||||||| || ||||    
T  47746326 aaatatgtggtttgagacaaagcttctagtcttttat---cattcgatttgtgtgaaaggtcgtttgagtaatgtttcaaa-gtgagacttttgggtcaa 47746421  T
Q  129 tggatttagtagtagcttttgttatgggctccaaatgc--attgcatgaaaacaagtacaagatggaaaatgcttggaagttcttcaatt 216  Q
    |||||||||||||| ||||||| ||  | | |||||||  |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  47746422 tggatttagtagtaacttttgtcatatgttacaaatgcgcattgcatggaaacaagtacaagatggaaaatgctcggaagttcttcaatt 47746511  T

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Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 303 - 491
Target Start/End: Original strand, 34977444 - 34977630
Alignment:
Q  303 taaaagtgtgaaatgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatctaagaaggattgtactatcctt 402  Q
    ||||| ||||||||||||||||||  ||| ||  |||||||||||| ||| ||||  ||| | ||||| ||| |||||| | ||||||| |||||| ||     
T  34977444 taaaaatgtgaaatgattcattaagatgaaaagggattacaagatagtatttata--ctataggctaattgtgctatctgaaaaggatt-tactattctc 34977540  T
Q  403 aagctaaagtacaatgtaaaa-ctaattacttgtactacaagatttcttactattatccttattatcatttgaactatcattatgcaata 491  Q
    ||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||| |||||||||| ||||    
T  34977541 aagctaaagtacaatgtaaaaactagttacttgtagtacaagttttcttactatcatctttattatcatttgaattatcattatgtaata 34977630  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 366 - 491
Target Start/End: Original strand, 19913665 - 19913790
Alignment:
Q  366 gctaaatgtactatctaagaaggattgtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttatt 465  Q
    ||||| |||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||| | | || ||||      
T  19913665 gctaattgtactatcttagaaggattgtactatcctcaacctaaagtacaatgtaatactaattacttgtactataagatttcttattttcatgcttagg 19913764  T
Q  466 atcatttgaactatcattatgcaata 491  Q
    ||||| ||||||||||||||| ||||    
T  19913765 atcatgtgaactatcattatgtaata 19913790  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 19915273 - 19915375
Alignment:
Q  389 attgtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaactatcattatgca 488  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||||| || |||||||||| | | || ||||  ||||||||||||||||||||| |    
T  19915273 attgtactatcctcaagctaaactacaatgtaatactaattacttgtacgacgagatttcttattttcatgcttaggatcatttgaactatcattatgta 19915372  T
Q  489 ata 491  Q
    |||    
T  19915373 ata 19915375  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 15483602 - 15483644
Alignment:
Q  402 taagctaaagtacaatgtaaaactaattacttgtactacaaga 444  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  15483602 taagctaaagtacaatacaaaactaattgcttgtactacaaga 15483644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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