View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_high_42 (Length: 209)

Name: NF1159_high_42
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_high_42
NF1159_high_42
[»] chr8 (3 HSPs)
chr8 (1-147)||(1560647-1560793)
chr8 (1-75)||(2090606-2090680)
chr8 (72-147)||(2091117-2091192)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 1560647 - 1560793
Alignment:
Q  1 tacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaatttgtttctcaaaagcgtcgaagatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1560647 tacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaatttgtttctcaaaagcgtcgaagatttc 1560746  T
Q  101 ttatctttaataagaatttgagtaaaggctaatgatggttcaaggta 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1560747 ttatctttaataagaatttgagtaaaggctaatgatggttcaaggta 1560793  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2090606 - 2090680
Alignment:
Q  1 tacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaattt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2090606 tacatgtatcatttacaatttaatacataaatatgttgacactcaagataaaaatgaaccttcctagtcaaattt 2090680  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 2091117 - 2091192
Alignment:
Q  72 atttgtttctcaaaagcgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggta 147  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  2091117 atttgtttctcaaaagcgacaaagatttcttatctttaataagaatttgagaaaatgctaatgatggttcaaggta 2091192  T

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