View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_high_43 (Length: 207)
Name: NF1159_high_43
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_high_43 |
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| [»] scaffold1678 (1 HSPs) |
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Alignment Details
Target: scaffold1678 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 540 - 375
Alignment:
| Q |
22 |
acaactttcaaattgaaggtgctcacgaggaagaggtttgcaaggtgaaagtaaatggaaagggtccatgtacatataacatagacaaggaatacgaaat |
121 |
Q |
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| T |
540 |
acaactttcaaattgaaggtgctcacgaggaagaggtttgcaaggtgaaagtaaatggaaagggtccatgtacatataacatagacaaggaatacgaaat |
441 |
T |
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| Q |
122 |
gactgtccccaccaagaacctgggtgtaactacctcttctttgcaacgatttgttaatcccattca |
187 |
Q |
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| T |
440 |
gactgtccccaccaagaacctgggtgtaactacctcttctttgcaacgttttgttaatcccattca |
375 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 32303474 - 32303509
Alignment:
| Q |
37 |
aaggtgctcacgaggaagaggtttgcaaggtgaaag |
72 |
Q |
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| T |
32303474 |
aaggtgatcacgaggaagaggtttgcaaggtgaaag |
32303509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 32295832 - 32295865
Alignment:
| Q |
37 |
aaggtgctcacgaggaagaggtttgcaaggtgaa |
70 |
Q |
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| T |
32295832 |
aaggtgatcacgaggaagaggtttgcaaggtgaa |
32295865 |
T |
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