View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_1 (Length: 770)
Name: NF1159_low_1
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 319 - 770
Target Start/End: Complemental strand, 43773645 - 43773202
Alignment:
| Q |
319 |
acaagggaattttctcgttgttatgctatgatggtttgtaacgcatttgacgtttggaatctaaagatgtaatttttattaatttttgatttatcttgga |
418 |
Q |
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| T |
43773645 |
acaaggggattttctcgttgttatgctatgatggtttgtaacgcatttgacgtttggaatctaaagatgtaatttttattaatttc-gatttatcttgga |
43773547 |
T |
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| Q |
419 |
ttgttgctattgctgtaacaatttcgatcattccttgaatgtagcaatttggtgattgggtttccaccaaaataaatatggcgatttgattacctacaga |
518 |
Q |
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| T |
43773546 |
ttgttgctattgctgtaacaatttctgtc-------gaatgtagcaatttggtgattgggtttccaccaaaataaatatggcgatttgattacctacaga |
43773454 |
T |
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| Q |
519 |
atgtcacgaatttgttggtattttagtggattcagatgttggctttctatggcttgtaagttgaagcttaattctggttaattggatgtgattgaagatt |
618 |
Q |
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| T |
43773453 |
atgtcacgaatttgttggtattttagtggattcagatgttggctttctatggcttgtaagttgaagcttaattctggttaattggatgtgattgaagatt |
43773354 |
T |
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| Q |
619 |
gatcaaattaaaatggaagtgtgttggttcttaatatattatttatgatattttagtggtttcatctagttttgctttgtttattttttcatgcaaaagc |
718 |
Q |
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| T |
43773353 |
gatcaaattaaaatggaagtgtgttggttcttaatatattatttatgatattttagtggtttcatctagttttgctttgtttattttttcatgcaaaagc |
43773254 |
T |
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| Q |
719 |
tgtagtagttaaatttgtttattttcaatttgttgagatgggtacaatattt |
770 |
Q |
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| T |
43773253 |
tgtagtagtgaaatttgtttattttcaatttattgagatgggaacaatattt |
43773202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 43773930 - 43773739
Alignment:
| Q |
30 |
caaaccactctccgaacaacaggttttccttccatttccattcaattctttcgatctacatcattcccaaacaattacgcccaatttctcttcatttctt |
129 |
Q |
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| T |
43773930 |
caaaccactctccgaacaacaggttttccttccatttccattcaattctttcgatctacatcattcccaaacaattacgcccattttctcttcatttctt |
43773831 |
T |
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| Q |
130 |
ctaccttttacttttccccccattttaagtttaggtcgcattcaattacaaactgtgtttaatttcgcgatttagagactgagatgccatga |
221 |
Q |
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| T |
43773830 |
ctaccttttactttttcccccattttaagtttaggtcgcattcaattacaaactgtgtttaatttcgcgatttagagactgagatgccatga |
43773739 |
T |
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