View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_10 (Length: 457)
Name: NF1159_low_10
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 148 - 437
Target Start/End: Original strand, 3840186 - 3840479
Alignment:
| Q |
148 |
tatcaacaatgagaaataaatgggtcaaacttagataactccgcccagctacattttgatnnnnnnn-----gatacacaattatgttctcatttcacat |
242 |
Q |
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| T |
3840186 |
tatcaacaatgagaaataaatgggtcaaacttagataactccgcccagctgcattt-gataaaaaaaaaaaagatacacaattatgttctcatttcacat |
3840284 |
T |
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| Q |
243 |
acttgattttatatatctttcattctattcatttgtcaattgaaaaaatcaaccagggttgcatgttgttaattgttatttcaaaacacctcgtcccatt |
342 |
Q |
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| T |
3840285 |
acttgattttatatatctttcattctattcatttgtcaattgaaaaaatcaaccagggttgcatgttgttaattgttatctcaaaacacctcgtcccatt |
3840384 |
T |
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| Q |
343 |
ttcgtccctattgcttataagtagaaaatttcaattttgcatcttatagcatctgaattccatcaaaagaactctatattgaaggttgatgatgt |
437 |
Q |
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| T |
3840385 |
ttcgtccctattgcttataagttgaaattttcaattttgcatcttatagcatctgaattccatcaaaagaactctatattgaaggttgatgatgt |
3840479 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 32233604 - 32233649
Alignment:
| Q |
390 |
agcatctgaattccatcaaaagaactct-atattgaaggttgatga |
434 |
Q |
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| T |
32233604 |
agcaactgaattccatcaaaagaactctaatattgaaggttgatga |
32233649 |
T |
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