View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_11 (Length: 421)
Name: NF1159_low_11
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 28 - 415
Target Start/End: Original strand, 42086725 - 42087112
Alignment:
| Q |
28 |
catgttttgaaccattctttgttcctttttcaaggaaacaccaaacattccaacatagaagaacatggtgcaattttcaagtccaaaaatccaaccattg |
127 |
Q |
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| T |
42086725 |
catgttttgaaccattctttgttcctttttcaaggaaacaccaaacattgcaacatagaagaacatggtgcaattttcaagtccaaaaatccaaccattg |
42086824 |
T |
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| Q |
128 |
agaactattgcatgattggtctaacataccacatggatcaacattgtaccatttttcaagtgttgttgtcaagggaatttctgcatgatcatcatttctt |
227 |
Q |
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| T |
42086825 |
agaactattgcatgattggtctaacataccacatggatcaacattgtaccatttttcaagtgttgttgtcaagggaatttctgcatgatcatcatttctt |
42086924 |
T |
|
| Q |
228 |
aaaagttgatttcctctgtcctcaactttctctgtccatgttgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcat |
327 |
Q |
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| T |
42086925 |
aaaagttgatttcctctgtcctcaactttctctgtccatgttgtgcttctttcattttgatcatctgaataaattaccactttatcctccaaaccctcat |
42087024 |
T |
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| Q |
328 |
ttgaaaaccttggctttgtttcttcaaacctgctattgttgtatccatttcctgaaccaccatcttctgtgctattttcctttgcttc |
415 |
Q |
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| T |
42087025 |
ttgaaaacctttgctttgtttcttcaaacctgctattgttgtatccatttcttgaaccaccatcttctgtgctattttcctttgcttc |
42087112 |
T |
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