View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_12 (Length: 389)
Name: NF1159_low_12
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 31762990 - 31762617
Alignment:
| Q |
16 |
atctctcacataacaaaccaacaaaatatattgagaaacaaaaggtgagtgaaacaaacgttaatatttaatagcgtatgcatcaagctacatcacaaac |
115 |
Q |
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| T |
31762990 |
atctctcacataacaaaccaacaaaatatattgagaaacaaaaggtgagtgaaacaaacgttaatatttaatagcgtatgcatcaagctacatcacaaac |
31762891 |
T |
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| Q |
116 |
cttaaacaaattattttaaggtataacataacattgttgattgtcatgtactcaccgataactcagcaagcatggaaggcagtgttgagttggtttggtt |
215 |
Q |
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| T |
31762890 |
cttaaacaaattattttaaggtataacataacattgttgattgtcatgtactcaccaataactcagcaagcatggaaggcagtgttgagttggtttggtt |
31762791 |
T |
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| Q |
216 |
tcttctatcaaatattttctcagattattggatcattcgcggataattatcctttactttctctgtcttccaattcttccttcgaatctctatcatcttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |
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| T |
31762790 |
tcttctatcaaatattttctcagattattggatcattcgcggataattatcctttactttctttgtcttccaattcttccttcaaacctctatcatcttt |
31762691 |
T |
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| Q |
316 |
ggatcatgaatccgctgttcagatcattgaggacgcggatcaccaaccgtcacaaaagctcacggtatatatca |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
31762690 |
ggatcatgaatccgctgttcagatcattgaggacgcggatcaccaacagccacaaaagctcacggtatatatca |
31762617 |
T |
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