View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_13 (Length: 364)
Name: NF1159_low_13
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 31762973 - 31762617
Alignment:
| Q |
8 |
ccaacaatatatattgagaaacaaaaggtgagtgaaacaaacgttaatatttaatagcgtatgcatcaagctacatcacaaaccttaaacaaattatttt |
107 |
Q |
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| T |
31762973 |
ccaacaaaatatattgagaaacaaaaggtgagtgaaacaaacgttaatatttaatagcgtatgcatcaagctacatcacaaaccttaaacaaattatttt |
31762874 |
T |
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| Q |
108 |
aaggtataacataacattgttgattgtcatgtactcaccgataactcagcaagcatggaaggcagtgttgagttggtttggtttcttctatcaaatattt |
207 |
Q |
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| T |
31762873 |
aaggtataacataacattgttgattgtcatgtactcaccaataactcagcaagcatggaaggcagtgttgagttggtttggtttcttctatcaaatattt |
31762774 |
T |
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| Q |
208 |
tctcagattattggatcattcgcggataattatcctttactttctctgtcttccaattcttccttcgaatctctatcatctttggatcatgaatccgctg |
307 |
Q |
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| T |
31762773 |
tctcagattattggatcattcgcggataattatcctttactttctttgtcttccaattcttccttcaaacctctatcatctttggatcatgaatccgctg |
31762674 |
T |
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| Q |
308 |
ttcagatcattgaggacgcggatcaccaaccgtcacaaaagctcacggtatatatca |
364 |
Q |
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| T |
31762673 |
ttcagatcattgaggacgcggatcaccaacagccacaaaagctcacggtatatatca |
31762617 |
T |
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