View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1159_low_18 (Length: 345)
Name: NF1159_low_18
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 28 - 300
Target Start/End: Original strand, 32514246 - 32514518
Alignment:
| Q |
28 |
cactgccaacactgcagtgtttgttggagcacatgttagtgttctgattcttaacttgaggagacagaatagcatggaagcaactgtttttgttttgcct |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32514246 |
cactgccaacactgcagtgtttgttggagcacatgttagtgttctgattcttaacttgaggagacagaatagcatggaagcaactgtttttgttttgcct |
32514345 |
T |
|
| Q |
128 |
gttcctggtggaccccatatgagtttaataggatcattgtgatgacannnnnnnatatgaaaacaacttagaatagaatcttcttgagatttgtttagat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32514346 |
gttcctggtggaccccatatgagtttaataggatcattgtgatgacatttttttatatgaaaacaacttagaatagaatcttcttgagatttgtttagat |
32514445 |
T |
|
| Q |
228 |
tctgagctttgatcatgttttttactcgagaataggattgagggagatattctcctgaccagcaagtatgaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32514446 |
tctgagctttgatcatgttttttactcgagaataggattgagggagatattctcctgaccagcaagtatgaca |
32514518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 28 - 300
Target Start/End: Complemental strand, 32543243 - 32542971
Alignment:
| Q |
28 |
cactgccaacactgcagtgtttgttggagcacatgttagtgttctgattcttaacttgaggagacagaatagcatggaagcaactgtttttgttttgcct |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
32543243 |
cactgccaacactgcagtgtttgttggagcacatgttagtgttctgattcttaacttgaggagacaaaatagcatggatgcaactgtttttgttttgcca |
32543144 |
T |
|
| Q |
128 |
gttcctggtggaccccatatgagtttaataggatcattgtgatgacannnnnnnatatgaaaacaacttagaatagaatcttcttgagatttgtttagat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||| | |||||||| |
|
|
| T |
32543143 |
gttcctggtggaccccatatgagtttaataggatcattgtgatgacacttcttcatatgaagacaacttagaatagcatctttctgagactcgtttagat |
32543044 |
T |
|
| Q |
228 |
tctgagctttgatcatgttttttactcgagaataggattgagggagatattctcctgaccagcaagtatgaca |
300 |
Q |
| |
|
| ||||||||||| || |||| ||||| |||| |||| || ||||| | |||||||| ||||||| ||||| |
|
|
| T |
32543043 |
tttgagctttgattatagttttgactcgggaattggatcgaccgagatttactcctgacaagcaagtctgaca |
32542971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 32532437 - 32532550
Alignment:
| Q |
40 |
tgcagtgtttgttggagcacatgttagtgttctgattcttaacttgaggagacagaatagcatggaagcaactgtttttgttttgcctgttcctggtgga |
139 |
Q |
| |
|
|||||| || ||||||||||| || | ||||||| || ||||||||| ||| | |||| || | | |||||||| || ||||| ||||| |||||||| |
|
|
| T |
32532437 |
tgcagtattagttggagcacaagtcaatgttctggtttgtaacttgagtagagaaaataacaagcatgcaactgtcttagttttccctgtccctggtggt |
32532536 |
T |
|
| Q |
140 |
ccccatatgagttt |
153 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
32532537 |
ccccatataagttt |
32532550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 28857215 - 28857345
Alignment:
| Q |
28 |
cactgccaacactgcagtgtttgttggagcacatgttagtgttctgattcttaacttgaggagacagaatagcatggaagcaactgtttttgttttgcct |
127 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||| ||||||| | | |||||||| || | |||| || |||||| ||||| ||||||||||| |
|
|
| T |
28857215 |
cacttccaacactgcagtattagttggagcacatgttaatgttctggctttaaacttgagcagggaaaataacaaggaagccactgtctttgttttgccg |
28857314 |
T |
|
| Q |
128 |
gttcctggtggaccccatatgagtttaatag |
158 |
Q |
| |
|
|| |||||||| ||||| || |||||||||| |
|
|
| T |
28857315 |
gtccctggtgggccccaaataagtttaatag |
28857345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University