View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_2 (Length: 582)
Name: NF1159_low_2
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 30 - 572
Target Start/End: Original strand, 43653473 - 43654009
Alignment:
| Q |
30 |
atacacacagtcaaattaatcttacattagtaccttagatcttggcaaataacttatagctgatagctgataactgataaacgagtttatagctgatagc |
129 |
Q |
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| T |
43653473 |
atacacacagtcaaattaatcttacattagtaccttagatcttggcaaataacttatagcggata-------actgataaacgagtttatagctgatagc |
43653565 |
T |
|
| Q |
130 |
acgttacctaagcttaaaaatagaagattttcttaacataggataaaattggtnnnnnnnttagcttcttacaagggaagaaagattnnnnnnnn-gtac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| |||| |
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| T |
43653566 |
acgttacctaagcttaaaaatagaagattttcttaacaaaggataaaattggtaaaaaaattagcttctcacaagggaagaaagattaaaaaaaaagtac |
43653665 |
T |
|
| Q |
229 |
cttattggccttgcttttttcaaggtattcttcaataacgccagcattagcagaagaatttgaggctgaaacagcagtggtgaaaagtgtagctgccaat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43653666 |
cttattggccttgcttttttcaaggtattcttcaataacgccagcattagcagaagaattggaggctgaaacagcagtggtgaaaagtgtagctgccaat |
43653765 |
T |
|
| Q |
329 |
aaagcaagagcatttcttcttccatcacttgctcttgattctttggcttcaggaattctcacctgctgagccttgatcaatggtagcttgatacctgaaa |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653766 |
aaagcaagagcatttcttcttccatcacttgctcttgattctttggcttcaggaattctcacctgctgagccttgatcaatggtagcttgatacctgaaa |
43653865 |
T |
|
| Q |
429 |
cccctggtgatgcagcagagggcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattgcagc |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653866 |
cccctggtgatgcagcagagggcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattgcagc |
43653965 |
T |
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| Q |
529 |
catgtgtaatggattgctagtttagttctgctgatcgatctgtg |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653966 |
catgtgtaatggattgctagtttagttctgctgatcgatctgtg |
43654009 |
T |
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