View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_20 (Length: 341)
Name: NF1159_low_20
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 673652 - 673323
Alignment:
| Q |
1 |
aatgaatcttttagattggttagtttcaagatcatacatgtaataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactc |
100 |
Q |
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| T |
673652 |
aatgaatcttttagattggtcagtttcaagatcatacatgtaataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactc |
673553 |
T |
|
| Q |
101 |
ttcttcacagcctcataatatctttctgatctgtccctaaagagaagatgatcctttccagcagcagtaataagcatcttggaacaaccaagtgtagcca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
673552 |
ttcttcacagcctcaaaatatctttctgatctgtccctaaagagaagttgatcctttccagcagcagtaataagcatcctggaacaaccaagtgtagcca |
673453 |
T |
|
| Q |
201 |
aactaggtgccccagaagccaatggattgatcatagcgttatctaacccaccaggagcagaagggtatgcaaacttccaaatcctagactgtaaagtctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
673452 |
aactaggtgccccagaagccaatggattgatcatagggttatctaacccaccaggagcagaagggtatgcaaacttccaaatcctagactgtaaagtctc |
673353 |
T |
|
| Q |
301 |
ctcaaaccctataacaggttcttcccctat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
673352 |
ctcaaaccctataacaggttcttcccctat |
673323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 15233733 - 15233799
Alignment:
| Q |
43 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcaca |
109 |
Q |
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| T |
15233733 |
ataaacatgaccctcatctttctcttcaaagaattccaatttccctttccacccactattcttcaca |
15233799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 47301937 - 47301860
Alignment:
| Q |
43 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataata |
120 |
Q |
| |
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|||||||||||| ||||||| |||||||| ||||||| || ||||||||| ||||||||||||||| ||||||||| |
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| T |
47301937 |
ataaacatgatcttcatcttcttcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataata |
47301860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 17473799 - 17473733
Alignment:
| Q |
43 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcaca |
109 |
Q |
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||||||||| | |||||||||||||||||||||||||| || ||| ||||| ||||| ||||||||| |
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| T |
17473799 |
ataaacatggttctcatctttctcttcaaagaattccaatttcccattccacccactattcttcaca |
17473733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 17842074 - 17841997
Alignment:
| Q |
43 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataata |
120 |
Q |
| |
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||||||||| || |||| || |||||||| ||||||| || ||||||||| ||||||||||||||| ||||||||| |
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| T |
17842074 |
ataaacatggtcttcattttcttcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataata |
17841997 |
T |
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